Spo00009 (gene)

Overview
NameSpo00009
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_23857 : 649 .. 1326 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACACTTGGCTGCTCCTGCTCCTGGAAACAGGTGATACTCCCCGTCGTTCTGCTAGATTAAGTAGCAAATCAAGAGAAACAGACACACCAGAAAGTGGTTCGCGGCAGAAGAAATCACGCTCAAACAAGGAAGAGACTGATGGAGTTGAGTCTGCAGCTGCTGATAGGGAAGATGATGATGATAAGACTGGGACTGGGGATGAGAAAGATGTGGAGATGAAAGATAACAACACTGAAGAGGAGAAAGCTGAGGAACAGAAAGAAGTTGATGGTAAACTGGAAGAGCTGGAAAACTCTCAAGTACCAGAAGAGAATAAGAAACACGAAGAAAACAAAGTGGAGACTAGTCAAGGGAAAGAGCAACCTGAGAAAAATAAACCAGAAGCAGTTGAAAAACCTTGTGATGTTGAATTGCAAGGAGACACCAATAATGCAATTCCAGTTGAAAACACAAAGGAGCCAACTGTAGCTATCGTTCAGCCTGAGGAAGATGTCTCCTTATTAAACACAGAGAAAGAAGAAATTGAGGGATCTAAACAGCCACAGAATAAAGTCAGTTTGGTCCAAGTTGGTAACACTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAACCGAGTGCGACTCAACCAATTAGCTGTTGA

mRNA sequence

ATGAATGACACTTGGCTGCTCCTGCTCCTGGAAACAGGTGATACTCCCCGTCGTTCTGCTAGATTAAGTAGCAAATCAAGAGAAACAGACACACCAGAAAGTGGTTCGCGGCAGAAGAAATCACGCTCAAACAAGGAAGAGACTGATGGAGTTGAGTCTGCAGCTGCTGATAGGGAAGATGATGATGATAAGACTGGGACTGGGGATGAGAAAGATGTGGAGATGAAAGATAACAACACTGAAGAGGAGAAAGCTGAGGAACAGAAAGAAGTTGATGGTAAACTGGAAGAGCTGGAAAACTCTCAAGTACCAGAAGAGAATAAGAAACACGAAGAAAACAAAGTGGAGACTAGTCAAGGGAAAGAGCAACCTGAGAAAAATAAACCAGAAGCAGTTGAAAAACCTTGTGATGTTGAATTGCAAGGAGACACCAATAATGCAATTCCAGTTGAAAACACAAAGGAGCCAACTGTAGCTATCGTTCAGCCTGAGGAAGATGTCTCCTTATTAAACACAGAGAAAGAAGAAATTGAGGGATCTAAACAGCCACAGAATAAAGTCAGTTTGGTCCAAGTTGGTAACACTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAACCGAGTGCGACTCAACCAATTAGCTGTTGA

Coding sequence (CDS)

ATGAATGACACTTGGCTGCTCCTGCTCCTGGAAACAGGTGATACTCCCCGTCGTTCTGCTAGATTAAGTAGCAAATCAAGAGAAACAGACACACCAGAAAGTGGTTCGCGGCAGAAGAAATCACGCTCAAACAAGGAAGAGACTGATGGAGTTGAGTCTGCAGCTGCTGATAGGGAAGATGATGATGATAAGACTGGGACTGGGGATGAGAAAGATGTGGAGATGAAAGATAACAACACTGAAGAGGAGAAAGCTGAGGAACAGAAAGAAGTTGATGGTAAACTGGAAGAGCTGGAAAACTCTCAAGTACCAGAAGAGAATAAGAAACACGAAGAAAACAAAGTGGAGACTAGTCAAGGGAAAGAGCAACCTGAGAAAAATAAACCAGAAGCAGTTGAAAAACCTTGTGATGTTGAATTGCAAGGAGACACCAATAATGCAATTCCAGTTGAAAACACAAAGGAGCCAACTGTAGCTATCGTTCAGCCTGAGGAAGATGTCTCCTTATTAAACACAGAGAAAGAAGAAATTGAGGGATCTAAACAGCCACAGAATAAAGTCAGTTTGGTCCAAGTTGGTAACACTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAGAATCAACCCCTAAATCCTGATCAGGAACCGAGTGCGACTCAACCAATTAGCTGTTGA

Protein sequence

MNDTWLLLLLETGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEKDVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEAVEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQVGNTDQENQPLNPDQENQPLNPDQEPSATQPISC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00009.1Spo00009.1mRNA


Homology
[Close]
BLAST of Spo00009.1 vs. NCBI nr
Match: gi|902155108|gb|KNA05878.1| (hypothetical protein SOVF_186310 [Spinacia oleracea])

HSP 1 Score: 379.8 bits (974), Expect = 3.300e-102
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

		  

Query: 12  TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK 71
           TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK
Sbjct: 91  TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK 150

Query: 72  DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA 131
           DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA
Sbjct: 151 DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA 210

Query: 132 VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ 191
           VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ
Sbjct: 211 VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ 270

Query: 192 VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC 226
           VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC
Sbjct: 271 VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC 304
[Close]
BLAST of Spo00009.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186310 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.300e-102
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

		  

Query: 12  TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK 71
           TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK
Sbjct: 91  TGDTPRRSARLSSKSRETDTPESGSRQKKSRSNKEETDGVESAAADREDDDDKTGTGDEK 150

Query: 72  DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA 131
           DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA
Sbjct: 151 DVEMKDNNTEEEKAEEQKEVDGKLEELENSQVPEENKKHEENKVETSQGKEQPEKNKPEA 210

Query: 132 VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ 191
           VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ
Sbjct: 211 VEKPCDVELQGDTNNAIPVENTKEPTVAIVQPEEDVSLLNTEKEEIEGSKQPQNKVSLVQ 270

Query: 192 VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC 226
           VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC
Sbjct: 271 VGNTDQENQPLNPDQENQPLNPDQEPSATQPISC 304
The following BLAST results are available for this feature:
BLAST of Spo00009.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902155108|gb|KNA05878.1|3.3e-102100.hypothetical protein SOVF_1863... [more]
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BLAST of Spo00009.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QGQ1_SPIOL2.3e-102100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00009.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00009.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 81..101
scor

RNA-Seq Expression