Spo00073 (gene) | SpinachBase

Overview


Name	Spo00073
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone H2B
Location	Super_scaffold_70 : 714714 .. 715160 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCAAGGGAGAGAAGAAACCCGCCGAGAAGAAGCCCGCGGAGGAGAAGAAGGCCGCCGCCGCCGAGAAAGCTCCAGCAGAGAAGAAGCCAAAGGCCGGCAAGAAGCTTCCAAAAGAAGCTGGAGCCGCCGCTGGTGACAAGAAGAAGAAGAGACACAAGAAGAGCGTCGAAACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAAGTTCACCCTGACATCGGAATCTCCAGCAAGGCGATGAGCATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCAGCCAGGCTCGCTCGTTACAACAAGAAGCCTACCATCACTTCCCGGGAGATTCAGACTGCTGTTAGGCTTGTTCTTCCTGGTGAACTCGCTAAACACGCCGTGTCAGAAGGAACCAAGGCGGTCACCAAGTTTACTAGCTCTTAA

mRNA sequence

ATGCCGCCCAAGGGAGAGAAGAAACCCGCCGAGAAGAAGCCCGCGGAGGAGAAGAAGGCCGCCGCCGCCGAGAAAGCTCCAGCAGAGAAGAAGCCAAAGGCCGGCAAGAAGCTTCCAAAAGAAGCTGGAGCCGCCGCTGGTGACAAGAAGAAGAAGAGACACAAGAAGAGCGTCGAAACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAAGTTCACCCTGACATCGGAATCTCCAGCAAGGCGATGAGCATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCAGCCAGGCTCGCTCGTTACAACAAGAAGCCTACCATCACTTCCCGGGAGATTCAGACTGCTGTTAGGCTTGTTCTTCCTGGTGAACTCGCTAAACACGCCGTGTCAGAAGGAACCAAGGCGGTCACCAAGTTTACTAGCTCTTAA

Coding sequence (CDS)

ATGCCGCCCAAGGGAGAGAAGAAACCCGCCGAGAAGAAGCCCGCGGAGGAGAAGAAGGCCGCCGCCGCCGAGAAAGCTCCAGCAGAGAAGAAGCCAAAGGCCGGCAAGAAGCTTCCAAAAGAAGCTGGAGCCGCCGCTGGTGACAAGAAGAAGAAGAGACACAAGAAGAGCGTCGAAACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAAGTTCACCCTGACATCGGAATCTCCAGCAAGGCGATGAGCATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCAGCCAGGCTCGCTCGTTACAACAAGAAGCCTACCATCACTTCCCGGGAGATTCAGACTGCTGTTAGGCTTGTTCTTCCTGGTGAACTCGCTAAACACGCCGTGTCAGAAGGAACCAAGGCGGTCACCAAGTTTACTAGCTCTTAA

Protein sequence

MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00073.1	Spo00073.1	mRNA

Homology

[Close]

BLAST of Spo00073.1 vs. NCBI nr
Match: gi|902233045|gb|KNA22906.1| (hypothetical protein SOVF_029910 [Spinacia oleracea])

HSP 1 Score: 264.6 bits (675), Expect = 1.000e-67
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. NCBI nr
Match: gi|902185838|gb|KNA10559.1| (hypothetical protein SOVF_143230 [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 4.300e-66
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. NCBI nr
Match: gi|902184879|gb|KNA10386.1| (hypothetical protein SOVF_144860 [Spinacia oleracea])

HSP 1 Score: 257.7 bits (657), Expect = 1.300e-65
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKP EEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MAPKAEKKPAEKKPVEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. NCBI nr
Match: gi|657986068|ref|XP_008385152.1| (PREDICTED: probable histone H2B.1 [Malus domestica])

HSP 1 Score: 250.4 bits (638), Expect = 2.000e-63
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKPAEEKK+A AEKAPAEKKPKAGKKLPKEAGAAAGDKKKKR KKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKSAVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQES+RLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. NCBI nr
Match: gi|731349096|ref|XP_010685820.1| (PREDICTED: probable histone H2B.1 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 4.500e-63
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAA-GDKKKKRHKKSVE 60
           M PK EKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAA G+KKKKR KKSVE
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAAGEKKKKRTKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 149

[Close]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTN1_SPIOL (Histone H2B OS=Spinacia oleracea GN=SOVF_029910 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.100e-68
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTH0_SPIOL (Histone H2B OS=Spinacia oleracea GN=SOVF_143230 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.000e-66
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV24_SPIOL (Histone H2B OS=Spinacia oleracea GN=SOVF_037580 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.700e-66
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKP EEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET
Sbjct: 1   MAPKAEKKPAEKKPVEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUQ7_BETVU (Histone H2B OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174410 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.100e-63
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAA-GDKKKKRHKKSVE 60
           M PK EKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAA G+KKKKR KKSVE
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAAGEKKKKRTKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 149

[Close]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Match: M5WKF6_PRUPE (Histone H2B OS=Prunus persica GN=PRUPE_ppa012932mg PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.100e-63
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKPAEEKK+  AEKAPAEKKPKAGKKLPKEAGAAAGDKKKKR KKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQES+RLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 246.9 bits (629), Expect = 1.400e-64
Identity = 138/148 (93.24%), Postives = 142/148 (95.95%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PKGEKKPAEKKPAEEKK+  AEKAPAEKKPKAGKKLPKE G+AAG+KKKKR KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQES+RLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 243.0 bits (619), Expect = 2.000e-63
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PKGEKKPAEKKPAEEKK+  AEKAPAEKKPKAGKKLPKE G+AAG+KKKKR KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKL QES+RLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 242.3 bits (617), Expect = 3.400e-63
Identity = 139/148 (93.92%), Postives = 141/148 (95.27%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKPAEEKKA  AEKAPAEKKPKAGKKLPKE GAAAGDKKKKR KKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAV-AEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 228.0 bits (580), Expect = 6.700e-59
Identity = 133/148 (89.86%), Postives = 136/148 (91.89%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKP EEK  + AEKAPAEKKPKAGKKLPKEAGA  GDKKKK  KKSVET
Sbjct: 1   MAPKAEKKPAEKKPVEEK--SKAEKAPAEKKPKAGKKLPKEAGAG-GDKKKKMKKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 227.3 bits (578), Expect = 1.100e-58
Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEK---KAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKS 60
           M PK EKKPAEKKPA EK   + + AEKAPAEKKPKAGKKLPKEAG A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE+++LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Match: AT3G46030.1 (Histone superfamily protein)

HSP 1 Score: 228.0 bits (580), Expect = 3.700e-60
Identity = 133/148 (89.86%), Postives = 136/148 (91.89%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKSVET 60
           M PK EKKPAEKKP EEK  + AEKAPAEKKPKAGKKLPKEAGA  GDKKKK  KKSVET
Sbjct: 1   MAPKAEKKPAEKKPVEEK--SKAEKAPAEKKPKAGKKLPKEAGAG-GDKKKKMKKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Match: AT5G59910.1 (Histone superfamily protein)

HSP 1 Score: 227.3 bits (578), Expect = 6.400e-60
Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEK---KAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKS 60
           M PK EKKPAEKKPA EK   + + AEKAPAEKKPKAGKKLPKEAG A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE+++LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Match: AT3G45980.1 (Histone superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 3.200e-59
Identity = 132/151 (87.42%), Postives = 137/151 (90.73%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEK---KAAAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKS 60
           M P+ EKKPAEKKPA EK   + + AEKAPAEKKPKAGKKLPKEAG A GDKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 217.6 bits (553), Expect = 5.100e-57
Identity = 128/151 (84.77%), Postives = 133/151 (88.08%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAA---AAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKS 60
           M PK  KKPAEKKPAE+  A     AEKAPAEKKPKAGKKLPKEA     +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE+++LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Match: AT1G07790.1 (Histone superfamily protein)

HSP 1 Score: 215.7 bits (548), Expect = 1.900e-56
Identity = 128/151 (84.77%), Postives = 134/151 (88.74%), Query Frame = 1

		  
Query: 1   MPPKGEKKPAEKKPAEEKKAA---AAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRHKKS 60
           M P+ EKKPAEKK A E+      AAEKAPAEKKPKAGKKLP +    AGDKKKKR KK+
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKE---AGDKKKKRSKKN 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQESARLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQES++LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of Spo00073.1 vs. NCBI nr
BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
BLAST of Spo00073.1 vs. TAIR (Arabidopsis)

BLAST of Spo00073.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902233045\|gb\|KNA22906.1\|	1.0e-67	100.	hypothetical protein SOVF_0299...	[more]
gi\|902185838\|gb\|KNA10559.1\|	4.3e-66	98.6	hypothetical protein SOVF_1432...	[more]
gi\|902184879\|gb\|KNA10386.1\|	1.3e-65	97.9	hypothetical protein SOVF_1448...	[more]
gi\|657986068\|ref\|XP_008385152.1\|	2.0e-63	95.2	PREDICTED: probable histone H2...	[more]
gi\|731349096\|ref\|XP_010685820.1\|	4.5e-63	96.6	PREDICTED: probable histone H2...	[more]

BLAST of Spo00073.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RTN1_SPIOL	7.1e-68	100.	Histone H2B OS=Spinacia olerac...	[more]
A0A0K9QTH0_SPIOL	3.0e-66	98.6	Histone H2B OS=Spinacia olerac...	[more]
A0A0K9QV24_SPIOL	8.7e-66	97.9	Histone H2B OS=Spinacia olerac...	[more]
A0A0J8BUQ7_BETVU	3.1e-63	96.6	Histone H2B OS=Beta vulgaris s...	[more]
M5WKF6_PRUPE	4.1e-63	94.5	Histone H2B OS=Prunus persica ...	[more]

BLAST of Spo00073.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
H2B1_MEDTR	1.4e-64	93.2	Probable histone H2B.1 OS=Medi...	[more]
H2B2_MEDTR	2.0e-63	91.8	Probable histone H2B.2 OS=Medi...	[more]
H2B_GOSHI	3.4e-63	93.9	Histone H2B OS=Gossypium hirsu...	[more]
H2B7_ARATH	6.7e-59	89.8	Histone H2B.7 OS=Arabidopsis t...	[more]
H2B11_ARATH	1.1e-58	88.0	Histone H2B.11 OS=Arabidopsis ...	[more]

BLAST of Spo00073.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G46030.1	3.7e-60	89.8	Histone superfamily protein	[more]
AT5G59910.1	6.4e-60	88.0	Histone superfamily protein	[more]
AT3G45980.1	3.2e-59	87.4	Histone superfamily protein	[more]
AT2G28720.1	5.1e-57	84.7	Histone superfamily protein	[more]
AT1G07790.1	1.9e-56	84.7	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 132..145 score: 6.1E-49coord: 61..79 score: 6.1E-49coord: 80..100 score: 6.1E-49coord: 102..119 score: 6.1E-49coord: 119..132 score: 6.1
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 19..148 score: 1.4E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 51..147 score: 2.7
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 116..138 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 7..124 score: 2.1
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 27..148 score: 3.7
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 32..148 score: 5.32
None	No IPR available	unknown	Coil	Coil	coord: 90..110 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo27347	0.77	Barchart \| Table
Spo28175	0.77	Barchart \| Table
Spo09819	0.75	Barchart \| Table
Spo08905	0.75	Barchart \| Table
Spo00071	0.75	Barchart \| Table
Spo01375	0.74	Barchart \| Table
Spo03241	0.73	Barchart \| Table
Spo08799	0.73	Barchart \| Table
Spo12458	0.73	Barchart \| Table
Spo28289	0.72	Barchart \| Table
Spo01914	0.72	Barchart \| Table
Spo25445	0.71	Barchart \| Table
Spo26101	0.71	Barchart \| Table
Spo23192	0.71	Barchart \| Table
Spo11595	0.70	Barchart \| Table
Spo15603	0.70	Barchart \| Table
Spo04146	0.70	Barchart \| Table
Spo24586	0.70	Barchart \| Table
Spo18103	0.70	Barchart \| Table
Spo07652	0.69	Barchart \| Table
Spo19126	0.69	Barchart \| Table
Spo27245	0.69	Barchart \| Table
Spo16786	0.69	Barchart \| Table
Spo19887	0.68	Barchart \| Table
Spo01778	0.68	Barchart \| Table
Spo05531	0.68	Barchart \| Table
Spo12749	0.68	Barchart \| Table
Spo18269	0.68	Barchart \| Table
Spo18893	0.68	Barchart \| Table
Spo07600	0.67	Barchart \| Table
Spo02912	0.67	Barchart \| Table
Spo16087	0.67	Barchart \| Table
Spo02774	0.67	Barchart \| Table
Spo08441	0.67	Barchart \| Table
Spo05601	0.67	Barchart \| Table
Spo18962	0.67	Barchart \| Table
Spo05455	0.67	Barchart \| Table
Spo24594	0.66	Barchart \| Table
Spo21419	0.66	Barchart \| Table
Spo11594	0.66	Barchart \| Table
Spo17310	0.66	Barchart \| Table
Spo18135	0.66	Barchart \| Table
Spo00751	0.66	Barchart \| Table
Spo06681	0.66	Barchart \| Table
Spo06030	0.66	Barchart \| Table
Spo23717	0.66	Barchart \| Table
Spo03197	0.66	Barchart \| Table
Spo24600	0.65	Barchart \| Table
Spo12128	0.65	Barchart \| Table
Spo16088	0.65	Barchart \| Table
Spo14849	0.65	Barchart \| Table
Spo05487	0.65	Barchart \| Table