Spo00082 (gene)

Overview
NameSpo00082
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone H2A
LocationSuper_scaffold_70 : 683453 .. 684742 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTGGCGGGATTCCAATTGACAAAACCAAAATTCAAGCAATTTTGATAGTCGGTTCTGATTGGTCCATTCAAAAGCACACGGATCGCAACCAAAACAAATCCTCACCCGTAGATACACCCTAATCCAACGGTTAAAAACCCAACAATTAAATCTCCCCCCAAAACCCACCACCAACATCTCCCATTTCTACCATCCCCCTTCCACTATATAAACCTCTCCCTCCATCATAAACTTCCATCTCACTTCAAAATCTTCATTATCTCTCTCTCTCCTCTATAACTCTCAACTTTCTCTCACTAGAAGTTTCTCAAAAATCTCCAAATCTAGAAAATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTAGTTTCTCTCTCCTAACTCATTTCAATTTTCCGATTGTTTCTGTTAATTTGTCTGAATCTGAATCTGTTTTGTACATAGTTGTTGATTAATTCACAGATTTAATTGAAAAATGAATTGATTTTGGATCTGGATTCTAAGTTTTGATTTAATTGTAAAATGAAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAGGATGTTTATCGTTTCTGGTCCAAGTTAGAAAGATGGATGGTTTGTTGGGTTTTGATTTACTGCATTTTGTATCTACTGTTAGTACGAGTTCTAGTTAGGGTTTTTAATGAAATAGGAAGGTTGTATTAGTAATGGGTTGAATAGGAATTGGATCAATATCTGATTGGTCTATTTTCTGTAATCATATGGTTATTAATCAAAAATATTTATTTCTCCTACTTACGTTTGTTATCTATTGCTTCTTTAGCCCTGTCAATTGAAATTGAATTTTACTTGAAGTTTCACCTTTGTAATAAACTAAATTTCAATTAATCAATCAAATTGAAGTTTCACC

mRNA sequence

AAGTGGCGGGATTCCAATTGACAAAACCAAAATTCAAGCAATTTTGATAGTCGGTTCTGATTGGTCCATTCAAAAGCACACGGATCGCAACCAAAACAAATCCTCACCCGTAGATACACCCTAATCCAACGGTTAAAAACCCAACAATTAAATCTCCCCCCAAAACCCACCACCAACATCTCCCATTTCTACCATCCCCCTTCCACTATATAAACCTCTCCCTCCATCATAAACTTCCATCTCACTTCAAAATCTTCATTATCTCTCTCTCTCCTCTATAACTCTCAACTTTCTCTCACTAGAAGTTTCTCAAAAATCTCCAAATCTAGAAAATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAGGATGTTTATCGTTTCTGGTCCAAGTTAGAAAGATGGATGGTTTGTTGGGTTTTGATTTACTGCATTTTGTATCTACTGTTAGTACGAGTTCTAGTTAGGGTTTTTAATGAAATAGGAAGGTTGTATTAGTAATGGGTTGAATAGGAATTGGATCAATATCTGATTGGTCTATTTTCTGTAATCATATGGTTATTAATCAAAAATATTTATTTCTCCTACTTACGTTTGTTATCTATTGCTTCTTTAGCCCTGTCAATTGAAATTGAATTTTACTTGAAGTTTCACCTTTGTAATAAACTAAATTTCAATTAATCAATCAAATTGAAGTTTCACC

Coding sequence (CDS)

ATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAG

Protein sequence

MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAPKEAKPSTKAAKSPKKA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00082.1Spo00082.1mRNA


Homology
[Close]
BLAST of Spo00082.1 vs. NCBI nr
Match: gi|902233046|gb|KNA22907.1| (hypothetical protein SOVF_029920 [Spinacia oleracea])

HSP 1 Score: 282.0 bits (720), Expect = 6.400e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV
Sbjct: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA
Sbjct: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 152
[Close]
BLAST of Spo00082.1 vs. NCBI nr
Match: gi|388517407|gb|AFK46765.1| (unknown [Lotus japonicus])

HSP 1 Score: 255.8 bits (652), Expect = 4.900e-65
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKKSV+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153
[Close]
BLAST of Spo00082.1 vs. NCBI nr
Match: gi|902232644|gb|KNA22742.1| (hypothetical protein SOVF_031700 [Spinacia oleracea])

HSP 1 Score: 253.8 bits (647), Expect = 1.900e-64
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSA  GKGKKGA GRKGGGPKKK VTRSV+AGLQFPVGRIGRFLKKGRYAQRVG+GAPV
Sbjct: 1   MDSA--GKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINP+LLPKK AEK+PKE K  +KA KSPKKA
Sbjct: 121 NINPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. NCBI nr
Match: gi|388506518|gb|AFK41325.1| (unknown [Lotus japonicus])

HSP 1 Score: 253.8 bits (647), Expect = 1.900e-64
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153
[Close]
BLAST of Spo00082.1 vs. NCBI nr
Match: gi|731364908|ref|XP_010694234.1| (PREDICTED: probable histone H2A.5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 253.1 bits (645), Expect = 3.200e-64
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 5   AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAA 64
           AGGKGKKGAAGRKGGGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYLAA
Sbjct: 4   AGGKGKKGAAGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 63

Query: 65  VLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 124
           VLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP
Sbjct: 64  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 123

Query: 125 ILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           +LLPKKTAEKA KE K S KAAKSPKKA
Sbjct: 124 VLLPKKTAEKAAKEPK-SPKAAKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVN8_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_029920 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.400e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV
Sbjct: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA
Sbjct: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 152
[Close]
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: I3T2M3_LOTJA (Histone H2A OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.400e-65
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKKSV+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153
[Close]
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV94_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_031700 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.300e-64
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSA  GKGKKGA GRKGGGPKKK VTRSV+AGLQFPVGRIGRFLKKGRYAQRVG+GAPV
Sbjct: 1   MDSA--GKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINP+LLPKK AEK+PKE K  +KA KSPKKA
Sbjct: 121 NINPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: I3SM33_LOTJA (Histone H2A OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.300e-64
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153
[Close]
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEW7_BETVU (Histone H2A OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091950 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.200e-64
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 5   AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAA 64
           AGGKGKKGAAGRKGGGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYLAA
Sbjct: 4   AGGKGKKGAAGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 63

Query: 65  VLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 124
           VLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP
Sbjct: 64  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 123

Query: 125 ILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           +LLPKKTAEKA KE K S KAAKSPKKA
Sbjct: 124 VLLPKKTAEKAAKEPK-SPKAAKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.700e-63
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 1 

		  

Query: 3   SAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 62
           + AGGKGKKGAAGRK GGP+KKSV+RSVKAGLQFPVGRIGR+LKKGRYAQ VG+GAPVYL
Sbjct: 6   TGAGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYL 65

Query: 63  AAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 122
           AAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLL GVTIAHGGVLPNI
Sbjct: 66  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNI 125

Query: 123 NPILLPKKTAEKA----PKEAKPSTKAAKSPKKA 153
           NP+LLPKKTAEKA     KEAK   KAAKSPKKA
Sbjct: 126 NPVLLPKKTAEKASSGGSKEAKSPKKAAKSPKKA 159
[Close]
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.900e-62
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 1 

		  

Query: 1   MDSA---AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSG 60
           MD+A   AGGK KKGAAGRK GGP+KK+V+RSVKAGLQFPVGRIGR+LKKGRYAQR+G+G
Sbjct: 1   MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTG 60

Query: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGG 120
           APVYLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGG
Sbjct: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGG 120

Query: 121 VLPNINPILLPKKTAEKAP---KEAKPSTKAA-KSPKKA 153
           VLPNINP+LLPKKTAEKA    KEAK   KAA KSPKKA
Sbjct: 121 VLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159
[Close]
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.900e-62
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 1 

		  

Query: 1   MDSA---AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSG 60
           MD+A   AGGK KKGAAGRK GGP+KK+V+RSVKAGLQFPVGRIGR+LKKGRYAQR+G+G
Sbjct: 1   MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTG 60

Query: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGG 120
           APVYLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGG
Sbjct: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGG 120

Query: 121 VLPNINPILLPKKTAEKAP---KEAKPSTKAA-KSPKKA 153
           VLPNINP+LLPKKTAEKA    KEAK   KAA KSPKKA
Sbjct: 121 VLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159
[Close]
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 8.600e-62
Identity = 131/152 (86.18%), Postives = 138/152 (90.79%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MD   GGK  K A GRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPV
Sbjct: 1   MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPS-TKAAKSPKK 152
           NINP+LLPKKTAEKA K AK S  KAAKSPKK
Sbjct: 121 NINPVLLPKKTAEKADKPAKASKDKAAKSPKK 152
[Close]
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 8.600e-62
Identity = 131/152 (86.18%), Postives = 138/152 (90.79%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MD   GGK  K A GRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPV
Sbjct: 1   MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPS-TKAAKSPKK 152
           NINP+LLPKKTAEKA K AK S  KAAKSPKK
Sbjct: 121 NINPVLLPKKTAEKADKPAKASKDKAAKSPKK 152
[Close]
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 205.7 bits (522), Expect = 2.000e-53
Identity = 115/147 (78.23%), Postives = 127/147 (86.39%), Query Frame = 1 

		  

Query: 7   GKGKKGAAGRKG-GGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAV 66
           GK KK   GRK  G PK KSV++S+KAGLQFPVGRI RFLKKGRYAQR+G GAPVY+AAV
Sbjct: 5   GKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAV 64

Query: 67  LEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPI 126
           LEYLAAEVLELAGNAARDNKKSRIIPRH+LLA+RND+ELGKLL+GVTIAHGGVLPNIN +
Sbjct: 65  LEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSV 124

Query: 127 LLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           LLPKK+A K P E K +    KSPKKA
Sbjct: 125 LLPKKSATK-PAEEKATKSPVKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 203.0 bits (515), Expect = 1.300e-52
Identity = 124/179 (69.27%), Postives = 136/179 (75.98%), Query Frame = 1 

		  

Query: 1   MDSAAGGKGKKGAAGRK-GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAP 60
           MDS  G K KKGAAGR+ GGGPKKK V+RSVK+GLQFPVGRIGR+LKKGRY++RVG+GAP
Sbjct: 1   MDS--GTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAP 60

Query: 61  VYLAAVLEYLAAE------------------------VLELAGNAARDNKKSRIIPRHVL 120
           VYLAAVLEYLAAE                        VLELAGNAARDNKK+RIIPRHVL
Sbjct: 61  VYLAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVL 120

Query: 121 LAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKT--AEKAPKEAKPSTKAAKSPKKA 153
           LAVRND+ELG LL GVTIAHGGVLPNINPILLPKK+  A    K  K  +KA KSPKK+
Sbjct: 121 LAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177
[Close]
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 192.6 bits (488), Expect = 1.800e-49
Identity = 111/150 (74.00%), Postives = 125/150 (83.33%), Query Frame = 1 

		  

Query: 3   SAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 62
           S A  K  +GA GRKGG  +KKSV++SVKAGLQFPVGRI R+LKKGRYA R GSGAPVYL
Sbjct: 4   SQATTKPTRGAGGRKGGD-RKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYL 63

Query: 63  AAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 122
           AAVLEYLAAEVLELAGNAARDNKK+RI PRH+ LA+RND+ELG+LL GVTIA GGVLPNI
Sbjct: 64  AAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNI 123

Query: 123 NPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NP+LLPKK+   + +  K S  A KSPKKA
Sbjct: 124 NPVLLPKKSTASSSQAEKAS--ATKSPKKA 150
[Close]
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 182.2 bits (461), Expect = 2.400e-46
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 1 

		  

Query: 18  GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELA 77
           G G  KK+ TRS KAGLQFPVGRI RFLKKG+YA+RVG+GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 78  GNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAP 137
           GNAARDNKK+RI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKKT    P
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
[Close]
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 4.600e-45
Identity = 90/121 (74.38%), Postives = 104/121 (85.95%), Query Frame = 1 

		  

Query: 18  GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELA 77
           G G  KK+ +RS KAGLQFPVGRI RFLK G+YA+RVG+GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 78  GNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAPK 137
           GNAARDNKK+RI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKK     P+
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQ 128

Query: 138 E 139
           E
Sbjct: 129 E 129
The following BLAST results are available for this feature:
BLAST of Spo00082.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233046|gb|KNA22907.1|6.4e-73100.hypothetical protein SOVF_0299... [more]
gi|388517407|gb|AFK46765.1|4.9e-6591.5unknown [Lotus japonicus][more]
gi|902232644|gb|KNA22742.1|1.9e-6490.1hypothetical protein SOVF_0317... [more]
gi|388506518|gb|AFK41325.1|1.9e-6490.8unknown [Lotus japonicus][more]
gi|731364908|ref|XP_010694234.1|3.2e-6493.2PREDICTED: probable histone H2... [more]
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BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RVN8_SPIOL4.4e-73100.Histone H2A OS=Spinacia olerac... [more]
I3T2M3_LOTJA3.4e-6591.5Histone H2A OS=Lotus japonicus... [more]
A0A0K9RV94_SPIOL1.3e-6490.1Histone H2A OS=Spinacia olerac... [more]
I3SM33_LOTJA1.3e-6490.8Histone H2A OS=Lotus japonicus... [more]
A0A0J8BEW7_BETVU2.2e-6493.2Histone H2A OS=Beta vulgaris s... [more]
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BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H2A_MAIZE2.7e-6386.3Histone H2A OS=Zea mays PE=2 S... [more]
H2A5_ORYSI3.9e-6284.9Probable histone H2A.5 OS=Oryz... [more]
H2A5_ORYSJ3.9e-6284.9Probable histone H2A.5 OS=Oryz... [more]
H2A6_ORYSI8.6e-6286.1Probable histone H2A.6 OS=Oryz... [more]
H2A6_ORYSJ8.6e-6286.1Probable histone H2A.6 OS=Oryz... [more]
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BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G59870.12.0e-5378.2histone H2A 6[more]
AT5G02560.21.3e-5269.2histone H2A 12[more]
AT5G27670.11.8e-4974.0histone H2A 7[more]
AT1G51060.12.4e-4677.3histone H2A 10[more]
AT5G54640.14.6e-4574.3Histone superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 110..128
score: 8.3E-52coord: 82..96
score: 8.3E-52coord: 24..46
score: 8.3E-52coord: 68..81
score: 8.3E-52coord: 53..68
score: 8.3
IPR002119Histone H2ASMARTSM00414h2a4coord: 13..133
score: 4.9
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 22..99
score: 1.1
IPR009072Histone-foldGENE3D1.10.20.10coord: 16..132
score: 1.1
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 15..136
score: 4.84
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 3..152
score: 4.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo124580.80Barchart | Table
Spo056600.80Barchart | Table
Spo123150.79Barchart | Table
Spo185110.77Barchart | Table
Spo163660.77Barchart | Table
Spo171180.77Barchart | Table
Spo088160.77Barchart | Table
Spo063310.77Barchart | Table
Spo231930.76Barchart | Table
Spo032000.76Barchart | Table
Spo212880.76Barchart | Table
Spo154750.75Barchart | Table
Spo037060.75Barchart | Table
Spo237070.75Barchart | Table
Spo185710.75Barchart | Table
Spo167540.75Barchart | Table
Spo204600.75Barchart | Table
Spo203760.74Barchart | Table
Spo012820.74Barchart | Table
Spo155830.74Barchart | Table
Spo032410.74Barchart | Table
Spo115920.74Barchart | Table
Spo121910.73Barchart | Table
Spo232200.73Barchart | Table
Spo052440.73Barchart | Table
Spo272090.73Barchart | Table
Spo098000.73Barchart | Table
Spo131300.73Barchart | Table
Spo196360.73Barchart | Table
Spo129940.72Barchart | Table
Spo138460.72Barchart | Table
Spo037010.72Barchart | Table
Spo060940.72Barchart | Table
Spo208590.72Barchart | Table
Spo205190.72Barchart | Table
Spo119430.72Barchart | Table
Spo207840.71Barchart | Table
Spo212060.71Barchart | Table
Spo228090.71Barchart | Table
Spo058770.71Barchart | Table
Spo157510.71Barchart | Table
Spo135840.71Barchart | Table
Spo074230.71Barchart | Table
Spo197560.71Barchart | Table
Spo108110.71Barchart | Table
Spo108340.71Barchart | Table
Spo194130.71Barchart | Table
Spo108820.71Barchart | Table
Spo006890.71Barchart | Table
Spo056320.71Barchart | Table
Spo052100.71Barchart | Table
Spo220690.71Barchart | Table
Spo117360.71Barchart | Table
Spo132880.71Barchart | Table
Spo177180.71Barchart | Table
Spo176170.71Barchart | Table
Spo028860.70Barchart | Table
Spo194400.70Barchart | Table
Spo102910.70Barchart | Table
Spo223100.70Barchart | Table
Spo175750.70Barchart | Table
Spo151320.70Barchart | Table
Spo207030.70Barchart | Table
Spo005250.69Barchart | Table
Spo058040.69Barchart | Table
Spo059700.69Barchart | Table
Spo067430.69Barchart | Table
Spo068370.69Barchart | Table
Spo076680.69Barchart | Table
Spo084410.69Barchart | Table
Spo085030.69Barchart | Table
Spo115930.69Barchart | Table
Spo156510.69Barchart | Table
Spo177800.69Barchart | Table
Spo198560.69Barchart | Table
Spo221330.69Barchart | Table
Spo225350.69Barchart | Table
Spo230010.69Barchart | Table
Spo237410.69Barchart | Table
Spo253060.69Barchart | Table
Spo267190.69Barchart | Table
Spo207890.68Barchart | Table
Spo210220.68Barchart | Table
Spo028380.68Barchart | Table
Spo125160.68Barchart | Table
Spo108440.68Barchart | Table
Spo217620.68Barchart | Table
Spo037210.68Barchart | Table
Spo043110.68Barchart | Table
Spo115940.68Barchart | Table
Spo249140.68Barchart | Table
Spo121930.67Barchart | Table
Spo186470.67Barchart | Table
Spo258620.67Barchart | Table
Spo100890.67Barchart | Table
Spo092500.67Barchart | Table
Spo137230.67Barchart | Table
Spo272230.67Barchart | Table
Spo212780.67Barchart | Table
Spo057830.67Barchart | Table
Spo164960.67Barchart | Table
Spo136090.67Barchart | Table
Spo047880.67Barchart | Table
Spo253490.67Barchart | Table
Spo075850.66Barchart | Table
Spo120620.66Barchart | Table
Spo119690.66Barchart | Table
Spo180940.66Barchart | Table
Spo111590.66Barchart | Table
Spo192070.66Barchart | Table
Spo192360.66Barchart | Table
Spo086910.66Barchart | Table
Spo123110.66Barchart | Table
Spo074420.66Barchart | Table
Spo069040.66Barchart | Table
Spo061920.66Barchart | Table
Spo214040.66Barchart | Table
Spo234650.66Barchart | Table
Spo023800.66Barchart | Table
Spo139390.66Barchart | Table
Spo020450.66Barchart | Table
Spo135220.66Barchart | Table
Spo082140.65Barchart | Table
Spo143670.65Barchart | Table
Spo141650.65Barchart | Table
Spo184920.65Barchart | Table
Spo070540.65Barchart | Table
Spo225200.65Barchart | Table
Spo281520.65Barchart | Table
Spo047550.65Barchart | Table
Spo210790.65Barchart | Table
Spo086640.65Barchart | Table