Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAATTCCCGGCAAAACCAACTTTAGTTGAAGCTTCCCTTCAAACTAAATATACGCTTGTGTAAGGTGATTTTCACTTCAATTTTGCAATTGAATGTGGTTAAGTTGATGTTTTTCGCTCGAATTTCCTGAAAAATTGCAAAATTCTTCAAATTTGTTTTCTTTGTCGCTGCTATTTTCGATTCTAATGTTTCAATTGAATTTTTTAGGGTTTTAGAAGTTTTGCGGAAAATGGTGGAAGGAATGGATGCCACTGTTGTAACAGTCAGTGGATACTGTGGGAGTGAGCGGATGATGCTGATAAAGTTGATATCTGTCGCCGGTGCGAATTATGTTGGAAAATTGTCAAGATCTACAACGCATTTGGTGAGTATTTCTTTTATCTTTTTATTGCCCTAATTTGATATCAATTTTTTGGTATTATGTTTAAATTGCTAAGAGTTTGCGGGTTTTGCGTCGTTGTTGGTGAGAAATTGGTATACTCTTGGATAACTTATGGCAATTATGAGGTTATTTTTGCTTTAGTTGAAATGATGATGAATATTCCTGTTATAATTAAGGATGAATTTTGGGGGTGGTGTTTTTGTTTTTCTTGTTTCATGAATATTTCAATTTAGAAATTAATACGGGATTAGAGAGGTGATTAAGGGTTTCTGGCTGAAAGTTGCTTAAGGGTTCTACAAGGAAGAAATATAGTAGCAGATACCTAGATTTGGTTATGTAACATTGTGATTTAGGAGGACTTATCTATAGCTGAAAGGAAGGAGCTACTAGTAATTCGGTGCCTCCCCGCGCCATTCAACGTCAAGAGATTAGACATACCCTTAAGAGAGCTACATCAGCATATTCCTGGACTATAGCATGTCAGAGATTTTATTTGGAATCTGTAGGAGGCAGTGGATATAGAAAAGAACGCGCTAGAGCATGTCGTTCTTGCTATTGGGAGCAAGAGCAAGTAATAGTTTTTACTTTTGAGATCTAGCAGCTTGTTTGTGACAGAATACTTGCTGTATGTGAAGGAAGAAAGGTTGTATTGTATGCTTTTCATAGCAGTTATAAGGGGACTATTTAACTTTACAAAGAAAGCTATATGACTTTCTCGTTTGCACGGAAATATGTTACTGGCTTGTTGACTTGAAATGTCCTTTACAATTAATTGGATTTCAGAAATAAATATGATTTTTCGTCTGGGAGTTGCATAGGGTAATATTTGCTACTTCAAGGGTCATGCAAGGAAGATATACAGTCGCAGATTCCTAGATGTAGATGTATAATTTAGAGAGGACTTATGCATAAGTTAGAAGAAAGTTATGCATAAGTCTTATGCATTCTACAGCCAGCTATTAGACTTGGAGAAAGTTGTAGCCTTGTAGGGTGCATTGGATAGGATATATATGGAAGCATGTACAAGAGTTTGTTGGAGTACTTGCTCTAGGGAGCAAGTAAAAGTTTTGACTTTTGAATACCGAATGCTTAGTCTTTCAAAATGTGACAGTGTCCTTGCTTTTTGTGAAAGAATAAGAGGTTGAATAGTATGCCTGTTATCACAGTATTTAAGATGTCAGTTGTTATTTGGGCAGAACTATGTATACACTGATCATATATTTTCACTGCTTGTATTGTTTCACTGTCCTCTGGGTCTTTTCTTTAATTTATTTCATCTCATGATATGGCAACTGAAAAAATAACTATGTTGCTGGACAGATCTGTTGGAAATTTAAAGGGAAAAAACATGAATATGCCAAAAAGTTTGGAACTCTAATTATCAATCATCAGTGGCTTGAAGACTGCATGAAGGAAGGGAAGCGTATTCCAGAGTCTCCCTACACACTACGAAGGTAAAAACAGTTCTGGCATCTACACTGATCCATTCGCCTTTAAATGATCAGGCAGAGGAAGGATATATATTCCTTCTCTTTGGCTGCTTGAGAAGCAAATCATCATTTAGTGTTCTCATGAAATGATATATTGATATGATGATTCAGCTAAGAGGTCCTCAATCATCGTAACTGAACCATGTATAAATCTTTTTGCTATATAGATATCATGAAATGCTACTGTTCTCTTCTTCACTTATGATTTGTTTGACAAAGCTTGTTTGACTGCAGTATTGTTAGTCTGTTGAAATAGTGCCACCATTACATGTTTATCAAGTAGTATGTTGTTTACTTGTTTTATTATTTTCAGTGGGCAAGAAGTAGGTTTCAATATCCACAGCCTTCCAGCTGTCACGAAAACTGCAGGCTTGCTGTCTGAGAATAAGCTGCTTTTGAACAGCCCTAGCATACATGATCGTCTCAATGATGTAATAGATCTGGAGTCTGATGAAATTGAAAATGATGATTGGGACCACAATTTGTTGCTAGACGAGGTAATAGATTTGTCTTTGAAGAATATTTATTATTTTAGAAGGCAATGTTAAGGTGTAGCATTGGGGACTGAATTCTAGGGGCATTGGTAATGTAGAGCTGCACATTTGCACCTTTCAGATCTTGAGAGATTTGCAGTTATCTCTAGTGCCTGTTAGCCTTCTGCATTTTAACAAAGCTTTTGTAATTGAACTTAGTGTTCATCTGTTTCTACTAATGCTTTTAACTAACTATGGTGACTTGTTTTAAAAATATCTATTGTAGAATTTGTTTCCCGTACCAGGAAGCAGAATATCTGCTCGGCAACTATCTAAGAGGAAATTGGTCAAGGAAACTTTTAGAGAAGGCAGACGAGTAAAGGCGGATACCAAGAGGGCTATTCTTGAGCCCGAGATTCCTACAGTTGATGGACTTCAGGTGAGTAGGATCATAAGTGGAGCTTGAACTCTTCTCCTACTATATTGCTAATCTAAATTTAGATCAAAACTTAAATCTCGTCAGACTTTGTAATTGTGAAACTTCAGAAACAACTGTTATCGACTTATCGTATTACAGCAGAAAACTACTAACAGACTGAACTCTTACCTTTCTTCCTGTCCTTGATCTTTCAGTGTGAAGCATCAGATAACTCAATTGAATGCTCAATCAAGCAGAGAAGAAGTGATAATGACTTAAGTATCTTGCCAGATTTTGCTGAATCTTCTCGTAGAAGTCGTCGACTTGTGAAAAAGAATGCTAAAAGATATGATACTGAGATAGCTAGTACTGATGCTGAACAACAAAGCAGAACACTTTTAGGTGTCAATGAGCTCCCTGTTGCTTCAAGCCTATCCAATGACTTGAGCAGGGAAATTGAAGCAAGCATTCGCAGAAGGCTTGAGACTATGCCTGCTGTAAAAGGCAAAAACAGAGATGAAGTCAACAATATGAATGATACAGGTCCCCTTTTAGACACAAGCTTACACAGTCATGATGCATCAAATGCTAAGGGGATAAACATAGAAGAGAACATTCCTCGTGTTCAAAATTTAAATAGGGATAAGCTCGGAAGAGATCAGTCAACAATTGGCGCATCAGCAGAGCTATCATGTGTTATATGCTGGACAGAGTATAGTTCATTAAGAGGAGTTTTGTCATGTGGACATCGCTTCTGTTTCTCATGCATCCAGAATTGGGCTGATCACATGGTAAGCATAACTTTTTGTTCCTTCCTGCATAAAATAGCTTTTTGATTCGTGTACTGGGGATGATGATTGATGTCCATATTCCTGAGATTCATATCATTCTCCATCCACTTTAGAAAGTCTATTGGCAATCTGTAATTGTGTGCAAGGCAAAATAAGCTTCAAGGACTCTCATTTTCTTATTTAAGGGGGATCTATATGACAATCCATAATCTTTTGGCACCTGTTTAGAGGCTTTAGTATTAGCATAACAATGATAATTGCGGGAAGCATGGTTTAGACTAAAATTGTTCTAAATTCAAGTAGTCTAGGTAGTTTGTGTCATATTTGGACTACGACCCAAAATTTATCTCTACATTTGGTTTAAATGTGCAGTTGTTTAATAAGCCACTTTATCTGTTATACAGTCTTTAAACAGGAAGGAAGCCACATGCCCTCTATGCAAGGCCAGTTTTACCAACATTACAAGAGTAAATGCTGGAGCCTCTGTGGATCAGAAAATTTACTCGCAGACCATACCATGTGCGTCATCATCACAAGACATATTCTTTGTTTCTGAGGGTGTGGCATCTCATTCTGGCGCCCAGGTGATTTATGAGCTCATTTATAAAGATTCAACAAAAAATTTATCATGTTTTACCATGGCTTCCTTTTCAGGATACTTCTTGTATGTTAGTGTACTCTGTTTTTCTTGCTACCGATGGGTGTTCATACTTGAATGTTCTTTTTGAAGGATAAGGCAAAACTATTATGTAGTCGTGCTATATTAATGGATTTTTTTTTTGGTGTTACAGGTCATACTCCCCTCAGTTTGTTGTCGTTGCCAGCAGCGAGATCCTGAAGATCTTCTTATGTACTGTCAGATGTGCCAGAGTAGCTGCATACATCATTACTGCCTTGACCCTCCATTGTTTCCTTGGACTTGCATTGGCTGCAGAGATCGTCGATTGCCATTCTTCAGCTGAACGCCTGAACTCAATCTATTTCTGCTTATTTTGTTTAATTCACCCTGTCTGTATGTTCTGGTAGTCTGCAATGAATATAAATTTGTGGGAGTTAAATCATTGTAATGTAGAGTTTCAAGCCTCATATAAACTGGTTTGTCAGTCATAATAAGCTGATTTGACCTTCTAATTGTATGGCAATTAAGTTATACATCTGGTGCCCTTTTTTTTACCTTATCATCTTTATTTAATTATAACTGCA TTAATTCCCGGCAAAACCAACTTTAGTTGAAGCTTCCCTTCAAACTAAATATACGCTTGTGGTTTTAGAAGTTTTGCGGAAAATGGTGGAAGGAATGGATGCCACTGTTGTAACAGTCAGTGGATACTGTGGGAGTGAGCGGATGATGCTGATAAAGTTGATATCTGTCGCCGGTGCGAATTATGTTGGAAAATTGTCAAGATCTACAACGCATTTGATCTGTTGGAAATTTAAAGGGAAAAAACATGAATATGCCAAAAAGTTTGGAACTCTAATTATCAATCATCAGTGGCTTGAAGACTGCATGAAGGAAGGGAAGCGTATTCCAGAGTCTCCCTACACACTACGAAGTGGGCAAGAAGTAGGTTTCAATATCCACAGCCTTCCAGCTGTCACGAAAACTGCAGGCTTGCTGTCTGAGAATAAGCTGCTTTTGAACAGCCCTAGCATACATGATCGTCTCAATGATGTAATAGATCTGGAGTCTGATGAAATTGAAAATGATGATTGGGACCACAATTTGTTGCTAGACGAGAATTTGTTTCCCGTACCAGGAAGCAGAATATCTGCTCGGCAACTATCTAAGAGGAAATTGGTCAAGGAAACTTTTAGAGAAGGCAGACGAGTAAAGGCGGATACCAAGAGGGCTATTCTTGAGCCCGAGATTCCTACAGTTGATGGACTTCAGTGTGAAGCATCAGATAACTCAATTGAATGCTCAATCAAGCAGAGAAGAAGTGATAATGACTTAAGTATCTTGCCAGATTTTGCTGAATCTTCTCGTAGAAGTCGTCGACTTGTGAAAAAGAATGCTAAAAGATATGATACTGAGATAGCTAGTACTGATGCTGAACAACAAAGCAGAACACTTTTAGGTGTCAATGAGCTCCCTGTTGCTTCAAGCCTATCCAATGACTTGAGCAGGGAAATTGAAGCAAGCATTCGCAGAAGGCTTGAGACTATGCCTGCTGTAAAAGGCAAAAACAGAGATGAAGTCAACAATATGAATGATACAGGTCCCCTTTTAGACACAAGCTTACACAGTCATGATGCATCAAATGCTAAGGGGATAAACATAGAAGAGAACATTCCTCGTGTTCAAAATTTAAATAGGGATAAGCTCGGAAGAGATCAGTCAACAATTGGCGCATCAGCAGAGCTATCATGTGTTATATGCTGGACAGAGTATAGTTCATTAAGAGGAGTTTTGTCATGTGGACATCGCTTCTGTTTCTCATGCATCCAGAATTGGGCTGATCACATGTCTTTAAACAGGAAGGAAGCCACATGCCCTCTATGCAAGGCCAGTTTTACCAACATTACAAGAGTAAATGCTGGAGCCTCTGTGGATCAGAAAATTTACTCGCAGACCATACCATGTGCGTCATCATCACAAGACATATTCTTTGTTTCTGAGGGTGTGGCATCTCATTCTGGCGCCCAGGTCATACTCCCCTCAGTTTGTTGTCGTTGCCAGCAGCGAGATCCTGAAGATCTTCTTATGTACTGTCAGATGTGCCAGAGTAGCTGCATACATCATTACTGCCTTGACCCTCCATTGTTTCCTTGGACTTGCATTGGCTGCAGAGATCGTCGATTGCCATTCTTCAGCTGAACGCCTGAACTCAATCTATTTCTGCTTATTTTGTTTAATTCACCCTGTCTGTATGTTCTGGTAGTCTGCAATGAATATAAATTTGTGGGAGTTAAATCATTGTAATGTAGAGTTTCAAGCCTCATATAAACTGGTTTGTCAGTCATAATAAGCTGATTTGACCTTCTAATTGTATGGCAATTAAGTTATACATCTGGTGCCCTTTTTTTTACCTTATCATCTTTATTTAATTATAACTGCA ATGGTGGAAGGAATGGATGCCACTGTTGTAACAGTCAGTGGATACTGTGGGAGTGAGCGGATGATGCTGATAAAGTTGATATCTGTCGCCGGTGCGAATTATGTTGGAAAATTGTCAAGATCTACAACGCATTTGATCTGTTGGAAATTTAAAGGGAAAAAACATGAATATGCCAAAAAGTTTGGAACTCTAATTATCAATCATCAGTGGCTTGAAGACTGCATGAAGGAAGGGAAGCGTATTCCAGAGTCTCCCTACACACTACGAAGTGGGCAAGAAGTAGGTTTCAATATCCACAGCCTTCCAGCTGTCACGAAAACTGCAGGCTTGCTGTCTGAGAATAAGCTGCTTTTGAACAGCCCTAGCATACATGATCGTCTCAATGATGTAATAGATCTGGAGTCTGATGAAATTGAAAATGATGATTGGGACCACAATTTGTTGCTAGACGAGAATTTGTTTCCCGTACCAGGAAGCAGAATATCTGCTCGGCAACTATCTAAGAGGAAATTGGTCAAGGAAACTTTTAGAGAAGGCAGACGAGTAAAGGCGGATACCAAGAGGGCTATTCTTGAGCCCGAGATTCCTACAGTTGATGGACTTCAGTGTGAAGCATCAGATAACTCAATTGAATGCTCAATCAAGCAGAGAAGAAGTGATAATGACTTAAGTATCTTGCCAGATTTTGCTGAATCTTCTCGTAGAAGTCGTCGACTTGTGAAAAAGAATGCTAAAAGATATGATACTGAGATAGCTAGTACTGATGCTGAACAACAAAGCAGAACACTTTTAGGTGTCAATGAGCTCCCTGTTGCTTCAAGCCTATCCAATGACTTGAGCAGGGAAATTGAAGCAAGCATTCGCAGAAGGCTTGAGACTATGCCTGCTGTAAAAGGCAAAAACAGAGATGAAGTCAACAATATGAATGATACAGGTCCCCTTTTAGACACAAGCTTACACAGTCATGATGCATCAAATGCTAAGGGGATAAACATAGAAGAGAACATTCCTCGTGTTCAAAATTTAAATAGGGATAAGCTCGGAAGAGATCAGTCAACAATTGGCGCATCAGCAGAGCTATCATGTGTTATATGCTGGACAGAGTATAGTTCATTAAGAGGAGTTTTGTCATGTGGACATCGCTTCTGTTTCTCATGCATCCAGAATTGGGCTGATCACATGTCTTTAAACAGGAAGGAAGCCACATGCCCTCTATGCAAGGCCAGTTTTACCAACATTACAAGAGTAAATGCTGGAGCCTCTGTGGATCAGAAAATTTACTCGCAGACCATACCATGTGCGTCATCATCACAAGACATATTCTTTGTTTCTGAGGGTGTGGCATCTCATTCTGGCGCCCAGGTCATACTCCCCTCAGTTTGTTGTCGTTGCCAGCAGCGAGATCCTGAAGATCTTCTTATGTACTGTCAGATGTGCCAGAGTAGCTGCATACATCATTACTGCCTTGACCCTCCATTGTTTCCTTGGACTTGCATTGGCTGCAGAGATCGTCGATTGCCATTCTTCAGCTGA MVEGMDATVVTVSGYCGSERMMLIKLISVAGANYVGKLSRSTTHLICWKFKGKKHEYAKKFGTLIINHQWLEDCMKEGKRIPESPYTLRSGQEVGFNIHSLPAVTKTAGLLSENKLLLNSPSIHDRLNDVIDLESDEIENDDWDHNLLLDENLFPVPGSRISARQLSKRKLVKETFREGRRVKADTKRAILEPEIPTVDGLQCEASDNSIECSIKQRRSDNDLSILPDFAESSRRSRRLVKKNAKRYDTEIASTDAEQQSRTLLGVNELPVASSLSNDLSREIEASIRRRLETMPAVKGKNRDEVNNMNDTGPLLDTSLHSHDASNAKGINIEENIPRVQNLNRDKLGRDQSTIGASAELSCVICWTEYSSLRGVLSCGHRFCFSCIQNWADHMSLNRKEATCPLCKASFTNITRVNAGASVDQKIYSQTIPCASSSQDIFFVSEGVASHSGAQVILPSVCCRCQQRDPEDLLMYCQMCQSSCIHHYCLDPPLFPWTCIGCRDRRLPFFS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00136.1 vs. NCBI nr
Match: gi|902235485|gb|KNA23936.1| (hypothetical protein SOVF_020900 [Spinacia oleracea]) HSP 1 Score: 1028.5 bits (2658), Expect = 4.000e-297 Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 1
BLAST of Spo00136.1 vs. NCBI nr
Match: gi|731316855|ref|XP_010666051.1| (PREDICTED: uncharacterized protein LOC104883257 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 651.4 bits (1679), Expect = 1.300e-183 Identity = 342/513 (66.67%), Postives = 394/513 (76.80%), Query Frame = 1
BLAST of Spo00136.1 vs. NCBI nr
Match: gi|731316857|ref|XP_010666057.1| (PREDICTED: uncharacterized protein LOC104883257 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 497.3 bits (1279), Expect = 3.200e-137 Identity = 269/423 (63.59%), Postives = 310/423 (73.29%), Query Frame = 1
BLAST of Spo00136.1 vs. NCBI nr
Match: gi|1009127004|ref|XP_015880463.1| (PREDICTED: uncharacterized protein LOC107416489 [Ziziphus jujuba]) HSP 1 Score: 360.5 bits (924), Expect = 4.700e-96 Identity = 209/527 (39.66%), Postives = 317/527 (60.15%), Query Frame = 1
BLAST of Spo00136.1 vs. NCBI nr
Match: gi|719967516|ref|XP_010262109.1| (PREDICTED: uncharacterized protein LOC104600707 [Nelumbo nucifera]) HSP 1 Score: 359.8 bits (922), Expect = 8.100e-96 Identity = 211/515 (40.97%), Postives = 302/515 (58.64%), Query Frame = 1
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWP7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020900 PE=4 SV=1) HSP 1 Score: 1028.5 bits (2658), Expect = 2.800e-297 Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 1
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ53_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031340 PE=4 SV=1) HSP 1 Score: 651.4 bits (1679), Expect = 9.300e-184 Identity = 342/513 (66.67%), Postives = 394/513 (76.80%), Query Frame = 1
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Match: M1CIT8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026556 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 3.800e-92 Identity = 207/514 (40.27%), Postives = 291/514 (56.61%), Query Frame = 1
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L7F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271310 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 2.400e-91 Identity = 208/514 (40.47%), Postives = 288/514 (56.03%), Query Frame = 1
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Match: A0A067JWH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25651 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 9.300e-91 Identity = 206/537 (38.36%), Postives = 292/537 (54.38%), Query Frame = 1
BLAST of Spo00136.1 vs. ExPASy Swiss-Prot
Match: Y4211_ARATH (BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=3 SV=3) HSP 1 Score: 77.4 bits (189), Expect = 5.000e-13 Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 1
BLAST of Spo00136.1 vs. TAIR (Arabidopsis)
Match: AT1G67180.1 (zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein) HSP 1 Score: 171.4 bits (433), Expect = 1.400e-42 Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 1
BLAST of Spo00136.1 vs. TAIR (Arabidopsis)
Match: AT4G02110.1 (transcription coactivators) HSP 1 Score: 77.4 bits (189), Expect = 2.800e-14 Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 1
BLAST of Spo00136.1 vs. TAIR (Arabidopsis)
Match: AT1G77320.1 (transcription coactivators) HSP 1 Score: 49.3 bits (116), Expect = 8.200e-6 Identity = 24/76 (31.58%), Postives = 42/76 (55.26%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00136.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00136.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00136.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo00136.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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