Spo00163 (gene) | SpinachBase

Overview


Name	Spo00163
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RING-H2 finger protein
Location	SpoScf_03131 : 16797 .. 23466 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAAAAACTGTTAAAAAACTCTGGAGTCTGGACAATTGGAGCTGACGAAAGACTTCCCGAGGCAAAGGGTTGGGCGCAACTCGGTCTCCGATTCCCAACGCGTCCTAGTCACACGCCGGTTCTCGCCGTCTTCGGCTTCTTCTACAATTCCAAACCTCCAAAAATAAAATCCTTTTAGCTTTAGTTGCATTTGTAATTTAGGATTTTGTATATTACCAAAAAAGTTAAAAAAAACCTGATCAAAAGTCCGTTTGATAAATTGTGAGCTCGTTTGTTCGATTTTTGCACACGATTTCTGATCAAATTATCGTAAGTGAATCTAATTTTCATTTTCTTGTTTAAATTTGTTTGATTTTGTCTTATATTTGTTTGATTTTTAGGGTTGTTATTATGTGAAATTATGGGGGAAAAATTAGCGTTATGCTTATATGTTTTTCTTCAATTGAGAAACGTTTTAGTTGTAGAATTAAGAATTTGAGTTCTGTTTCGTAATTTTAGGATTTTGTCTGTAAATTCATGTCTTTGAATATTCGCGGCTTTATGATTTTGTAGGTTTCGTTATGAATTAGGCCCTATTTCGAAATGGAAACCGTTTCTCTCTCCTCTGAAGCTACTTAATTTGGGGTTTTATTGATCCTTTTGGTATAAGTTTCGTGATGATAAAGATCATTAATTTGTGATTAATTACTTGAAGGGGTTCTCCTTAAGAAGGGGGAAACAGGGTTTTAGTGGGAATGTGGGATATATCTGGGTTTCCAGTATTTTATTTATGTAGAATGCATATAATTATGAGAGTGTGTGTTGGGAAACAAATTATTGAATGCTTTTAACCTTATTTTGACACTTTTCTTGTTATTTGTGGTAGTCTTTTGAAGAGAAGCTGTTCATACAACCTACAGAAAATTTCATCATTGGAATTCTTTTTGTGAAGTTATACGATCATGAGTTTTGTTTTTAGGGGAACTCGAGCTGATATTGAGAATGCATTTCAAGGAATAATCCCTGAACGGCGGGTGGTAAATTTCTTATAGCTTGCTTTCAAATTGGATATCGTTGTTTTAGCAAAACTCTAGTTTAAGTCGGGTATATAGCAAGATGGTTAAGGTTTCCCACGCCTCTTTAGTTGGCACCCCGTGTCCCCTTAATAGTTAATTGTCGACTACTCGACCCTGTGTATGAATGCCACTGATAAAATTGCCCTGATCTTGTTTTCACCCTTGTCTCACCTGACATGTGTCTGATATCTAACCCTATAACTAATTTTTTTTTATGATAACTAATTTGAACATCTGTTCTGTCTCTTATTTTTTTTTTTTATTATCAGCGCATTCATGCAGCACGACCAGTGAATACAAATTCACTTGCTTTCCTTGTAACTGGTACTGTCTTTGCTCTTTGTATTATTTGCAGCTTGGCTATTGTTTGTTTATGTCTCTATTAAACAACTTTGGATTTGGCCAATTCTCTTACTATTTTATTTGTTGCAGTACTTTTGCTCTTCATGATACTAAATTCCCACCAAATGTCACCGAATTTTTTGGTAGATATGTTTCTGATTTGCAAGCTGAATTTTGTTTGTACTTACTAAACTTGGTTGTTTCAAATTGTGATATGGTGTTATCGTTTTGAATATTTGTGAAGCTCTGGCTGGTATTTGGCTTCTTTTTGATGGCTACTAGCCTAAGAATGTATGCAACATGTCAACAACTTCAAGCACAGGCACAAGCACATGCTGTAGCAGCCAGTGGCCTACTTCGCCATACTGAGCTCCGATTGCAGATGCCACCCTCTATTGCATTTGCCACAAGAGGACGTCTGCAGGGCCTTAGGCTACAGCTTGCCCTTCTTGATCGGGAGTTTGACGATTTAGGTATAGTGAGTTACGTTGTCTTATGCACTCATTTTAACTGGTGGAATTATGTTCATGATTCATTGATTGTTTAAATTCGTATTGAATCCCAATTCCTGGCTACTGCTACTTTTTCTTCCCCTATACGTTTGCTTTTATTTTATTGTTCTTACTTGTGAAATCGAATTATCTTTTTGTGTCGTATTGTTGCAGATTATGAAACTTTAAGAGCGCTGGATGCTGACAATGCACCTTCAGTTCCTTCAATGAGTGAGGACGAAATAAATTCTCTCCCTGTCCACAAGTATAAGGTTACTGGTATAGACAGGTGATAATTAACCCATCTTCTCCACACGAAGTATATGCGTTTGTATGTTCAAATGTATATGTTTGATGCACTTTTCTCTTGAACAAGTGTATTGGAATTTTAGAGTCTCTTCCAAATTGTGGCCTTCTTTTGGTTCTGAATATGCATGTATTGTTTTGTGGAAAATGACATACACATGCCAACTGCTATATTTTAAGTACCTGCTGACATATCTACCTATCTAGTAATGTAATTTTTCCAAAGATAGCTTTGTTGGTTGCAAGGCTTTATTGCTTAAAGTATATAATCTATTGGCAGATCAGTTAATTGCAAAGCATATGACGTTAATCCTGCTGTCTGTGTTTTGCAGCATGGCAGTTCAACAAACTAAAACCCTAATGATGTCTGATTTGTGCTTATGCCGATCTGATAAGCAGTAGTTATGTCTGTCTCTTTTCTTTTGATACACGATTCCTATATAAATATAGTAGTGATGTATACTCCCTCCGTATCTTTTTAGGAGTTACATGTTGACCGACACAAGTATAAGAGATGAGAGTTGAATGCAGTATAATACTAAAGCAAGTCGGGGAGGAAGTAATAAACAAATAGAAAAAGATAGTTGGATAAGTATTTCAATCAAAGAAGAGGGAGTTTATTGTAGTAGTGGTTCGGTGGTTCCCATAGGAAAGTAAGATGCCTCGTATATTAAATAATTGGGGAGTGGGGTAGAAAACTTACAAAAATAGAAATGTAGCCCTTAAATAAATACGGTCATAAGTGGTATATGAAACCCCTAAAAATATACAGAGGGAGTATCACTCTTTTGGAAAATTTGGAATGTCTTTTATGGTTGCTGAGAGTTGTGTCTGGTGTCTTGGCTGAAGCCGGCCTGATAGATGTGAAGGACAATTGGGAGAGGAAATTTAGGGCGTCACTACTGGTACTGGCTTGTGACTAGTAAAATATGGAGAAATCCTTCTGAAATCTCATTTTGATAAGAAATCAGTGACGCCATGATAAAATGTCATTGGGTCTGAAGCATAGCTTATCTGTGTAACATGAATTTCATAGAACAAATACTGACTTACGATTACTTCCATATGTGAACTGCGACAAGGTTTATAACAAACATCATGTTATTGCAGAGAATAAAACCCATAATTTGTCCTGGTGTCTCTTTGGGGAAAAGAAACATCAAATGATAGCTGCCACAATCTTCTTTTTCATTTAATTTTCACTTGTGTGCATGTACATCTCAGTTTCCATTTTGAAGTTTATACCTGTATTTGGAGGATGAAGATTAAAAACTTAAGCGAAATGTATCATACACTAACAATTGCTCTCTTTATGATTGCTGTCAATATGCATGTGATATTCATTATTGCCAAACATGTACTAAATCTGTTTTCCAGCCAATCTCAACAGAGGCCACCCATGTTAATGTTCCGGATGGAAATTTACTTGTTTGCTTGTTAAAATTTGCTGGCTTGTGCATATTAAATTGACAAACTTTTATCTTTTGAAATAGTGATATGGTAGCAAAGAAGCAGGCATCATCTTCTGCATCTTCTGAGGTATTCTTCATTAGTGTGCTTTCTATTTGTTGGCTTGAACTCTGTGAGATCTTCTGTAGAAATGGCTATTTCAGGTTTGCCACACCCTGCTCAATTGTGAGCGAATTTCAAATTTGCGCCTTACATTAGAAATAGTGGATCACCACACATCTAATTAAGACGAAGATCAACTTCTGCGTATTCAGTAGTTTAATAGACCTTGCTTCTTAATAGTTTAACAAGAAGGAAAAGCAATACTTGGTCAATTACTTAATAATTCAAAATCAATTTACAATTTACTCATATTGGTGGATTAATAAAAAAAAAAATATAGTTTTCCTTAACAATCCTATAGATAGAGCTGACTATTATTAATTTGACCTAGCATTTTCATTTCGAATTAGCAAATTCCCTGTTCTTGTATTCATTCCTCGTAGTGGGACATCTATATTCCTGGCAACACTAACTTATTTTCTTTATTTAATATCTCAACATAGGTTCCAAACGGAAAGGTTCTTGAAACATTGAACTTAGGTTGTCTAGGTTTCAGTGACGTACGGCGGTATGTTGGTGTAGAAGTGTGGCAATTGACAAAGGGATTTCCCTGCTACTGGAATTTAACATTTTCCTTGCCATCATGTGATTTTCTTTATCACACCCGATGAGTTATTATAGTCCAACAATATGTAGATTCGTGATAACTCAGCACCCACCTTGTCATCGTGCTATTTGTGTAGTTACGACTCTCTAGTTGTTTTATTCATGCAGTAAACTGTGCTCTTTAGTATTCTGCCATTACAAATTCTTCCTAAGCTTGTCTCTAGTTTGCTTAGAGCCTTGAAAGTTCTTTATTTCGGTTAACTATCATAGATTTTGCTCGATCTATATAGTATGCAATATATAGGCATCTCCTTTATCTTTGAGCTGTATAAGTACCTTGGAATATCTACAATAGGTCAATGGATTATTTTATGAATTTATGTGCCTTCCTGAGTGCTGTATGCAATTAGGAGTTTAAGATGCGGGGAAGAAAAGAAGATATGCGTGGGTGGGATGAGTAGGTTATAAAGTGCTCCTACTTCTAAATCCTTGGTTATCACCCAATGTTTTTGGTCTCGTTTCACTGCTAAACAGAGCTAGAGAAAAGTAGTGACGTCACATCATCTGGGTAGAGAAATCAGTTTCAAAAGTTAGACAATATGTTATCTTCTTCTTATTGCAATTTGCAAATGAGCAAGGGTCTTTGACTCCGTAGCTTTGTTCTTCAAACCTCTGCATTGTTTGTTCAAGTTATTTCATTAGGTTGAGAAAGAATTATATCTGAAATAGGCTTTGATAGCCATAAATCATATGTAAACTCTTCTTTGACGATGGGATGCTCATCTTTATTACGCAAATTGCCTTTAAGAGCTTGAGAATTTTTGCTGTGGTTTTACTTATTTATTTGTTTTTGTAACTCCATAACTTCTGTGCATCTTTCATGATCCTTCATTTTTGTGAGCTTGAAACCTTTTCTGTTAAAATTTAGAAACCTATACACGTGTTTCTTGTTTATTTGATTCATTATGATTAATATCTGCGGAGTTGGAGGTCAAAGCTTCAGGTTTTGTTTTGTCCCTAGATTAGTCCCATACTAATTTTGTTGGGTACCTTTGTGTTTCTTGTTTATTTGATTCATTATGATTAATATCTGCGGAGTTGGAGGTCAAAGCTTCAGGTTTTGTTTTGTCCCTAGATTAGTCCCATACTAATTTTGTTGGGTACCTCTTTGTCCGCAACCAGAAGCAGCAGGACATTTCTATCAATCCTGGCAGCTCAAAAAGCAGCTCAGAAGATGAATTAACTTGTAGCGTATGCTTGGAGCAAGTAAATGTTGGAGAACTCATCCGTAGCTTGCCATGTTTGCACCAGGTGAGCTCTATTGGAGGTTTCCTTTGCTTCTCTTACCTGTGCTTGAAGGGCTCAACTGTAATAAGTCTGATAACGTTTAAAGATAACTAGATAAGAGATATGGAAAAATGTTTCCTCTGCTGGTTCACTTAATATCGTGAGTAATTGAGCTTGATACGGATTATGTTGTTGCCTATTATTTATAATGTTCTAACAGGGTAATTTTCTGTTTGTTGTGGTCTCTTCAATTGTGAAACCTGTTCATCCATGCAATGGTGCTGAAGTTATTTTTTTTCTCTTTAACACTCGCAATGGTTATTGAGCTTGTATCTATTAAAAAGCTTACTGTGATTACTGATTTGCAGATTTAAGTCTTTTGTTTTCTCATTTAAGTAATAAGAAATCTCATGCTGCTTTTGAATTCGTTGTGCAGTACCATGCTAACTGCATCGACCCATGGCTTAGACAGCAAGGAACGTGCCCTGTATGTAAATTCAAGGTTGGGACTAGTTGGCACGAAGATGGCCACGATGATGCTTCATACATGGTCTAAAAAGTGGCTCTGTTCTCATTGTATTTATCCCTGATTACAACTTACAAGGTTATGTAACTTTAGTTCTAAAGTGAATACCTCTATATTCATGTGAAAAACTAGCTGATCCACCGGAACGTCTTAGTAGTAGGAGTATTGGCTGGTACTGAATTCGGACCAATCGTCAGGAAATGTATACACCGAGGCCACGACCTTGCTTGGTATTCTGTATATGATTTTCGCACGTGCTTCTCATGTGAACGTGCTACATGCTACGATACCGGTGGTAGTGAAAATGAAACAGGGAAATGTTTGTTCATAACGAACATGTTCTTCCTTCGGGTTAGCATATGGAGATACCATGTAAATTTCATCCTGCCTTGTTGAATTGGAACCAACTACACTGCATTGTCCTCGAACAGTTGAGCTGCTGTGGGCCAACAACTTTTGTGCACAGATATAGATTCATTCTTCGTATCCGGTCCAGTCTCTCACAACAAGCTCTAAGTGAGTGAATAAAAGTTGCGCTATAG

mRNA sequence

AGGAAAAAAACTGTTAAAAAACTCTGGAGTCTGGACAATTGGAGCTGACGAAAGACTTCCCGAGGCAAAGGGTTGGGCGCAACTCGGTCTCCGATTCCCAACGCGTCCTAGTCACACGCCGGTTCTCGCCGTCTTCGGCTTCTTCTACAATTCCAAACCTCCAAAAATAAAATCCTTTTAGCTTTAGTTGCATTTGTAATTTAGGATTTTGTATATTACCAAAAAAGTTAAAAAAAACCTGATCAAAAGTCCGTTTGATAAATTGTGAGCTCGTTTGTTCGATTTTTGCACACGATTTCTGATCAAATTATCTCTTTTGAAGAGAAGCTGTTCATACAACCTACAGAAAATTTCATCATTGGAATTCTTTTTGTGAAGTTATACGATCATGAGTTTTGTTTTTAGGGGAACTCGAGCTGATATTGAGAATGCATTTCAAGGAATAATCCCTGAACGGCGGGTGCGCATTCATGCAGCACGACCAGTGAATACAAATTCACTTGCTTTCCTTGTAACTGTACTTTTGCTCTTCATGATACTAAATTCCCACCAAATGTCACCGAATTTTTTGCTCTGGCTGGTATTTGGCTTCTTTTTGATGGCTACTAGCCTAAGAATGTATGCAACATGTCAACAACTTCAAGCACAGGCACAAGCACATGCTGTAGCAGCCAGTGGCCTACTTCGCCATACTGAGCTCCGATTGCAGATGCCACCCTCTATTGCATTTGCCACAAGAGGACGTCTGCAGGGCCTTAGGCTACAGCTTGCCCTTCTTGATCGGGAGTTTGACGATTTAGATTATGAAACTTTAAGAGCGCTGGATGCTGACAATGCACCTTCAGTTCCTTCAATGAGTGAGGACGAAATAAATTCTCTCCCTGTCCACAAGTATAAGGTTACTGGTATAGACAGTGATATGGTAGCAAAGAAGCAGGCATCATCTTCTGCATCTTCTGAGAAGCAGCAGGACATTTCTATCAATCCTGGCAGCTCAAAAAGCAGCTCAGAAGATGAATTAACTTGTAGCGTATGCTTGGAGCAAGTAAATGTTGGAGAACTCATCCGTAGCTTGCCATGTTTGCACCAGTACCATGCTAACTGCATCGACCCATGGCTTAGACAGCAAGGAACGTGCCCTGTATGTAAATTCAAGGTTGGGACTAGTTGGCACGAAGATGGCCACGATGATGCTTCATACATGGTCTAAAAAGTGGCTCTGTTCTCATTGTATTTATCCCTGATTACAACTTACAAGGTTATGTAACTTTAGTTCTAAAGTGAATACCTCTATATTCATGTGAAAAACTAGCTGATCCACCGGAACGTCTTAGTAGTAGGAGTATTGGCTGGTACTGAATTCGGACCAATCGTCAGGAAATGTATACACCGAGGCCACGACCTTGCTTGGTATTCTGTATATGATTTTCGCACGTGCTTCTCATGTGAACGTGCTACATGCTACGATACCGGTGGTAGTGAAAATGAAACAGGGAAATGTTTGTTCATAACGAACATGTTCTTCCTTCGGGTTAGCATATGGAGATACCATGTAAATTTCATCCTGCCTTGTTGAATTGGAACCAACTACACTGCATTGTCCTCGAACAGTTGAGCTGCTGTGGGCCAACAACTTTTGTGCACAGATATAGATTCATTCTTCGTATCCGGTCCAGTCTCTCACAACAAGCTCTAAGTGAGTGAATAAAAGTTGCGCTATAG

Coding sequence (CDS)

ATGAGTTTTGTTTTTAGGGGAACTCGAGCTGATATTGAGAATGCATTTCAAGGAATAATCCCTGAACGGCGGGTGCGCATTCATGCAGCACGACCAGTGAATACAAATTCACTTGCTTTCCTTGTAACTGTACTTTTGCTCTTCATGATACTAAATTCCCACCAAATGTCACCGAATTTTTTGCTCTGGCTGGTATTTGGCTTCTTTTTGATGGCTACTAGCCTAAGAATGTATGCAACATGTCAACAACTTCAAGCACAGGCACAAGCACATGCTGTAGCAGCCAGTGGCCTACTTCGCCATACTGAGCTCCGATTGCAGATGCCACCCTCTATTGCATTTGCCACAAGAGGACGTCTGCAGGGCCTTAGGCTACAGCTTGCCCTTCTTGATCGGGAGTTTGACGATTTAGATTATGAAACTTTAAGAGCGCTGGATGCTGACAATGCACCTTCAGTTCCTTCAATGAGTGAGGACGAAATAAATTCTCTCCCTGTCCACAAGTATAAGGTTACTGGTATAGACAGTGATATGGTAGCAAAGAAGCAGGCATCATCTTCTGCATCTTCTGAGAAGCAGCAGGACATTTCTATCAATCCTGGCAGCTCAAAAAGCAGCTCAGAAGATGAATTAACTTGTAGCGTATGCTTGGAGCAAGTAAATGTTGGAGAACTCATCCGTAGCTTGCCATGTTTGCACCAGTACCATGCTAACTGCATCGACCCATGGCTTAGACAGCAAGGAACGTGCCCTGTATGTAAATTCAAGGTTGGGACTAGTTGGCACGAAGATGGCCACGATGATGCTTCATACATGGTCTAA

Protein sequence

MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRLQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVAKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00163.1	Spo00163.1	mRNA

Homology

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BLAST of Spo00163.1 vs. NCBI nr
Match: gi|902224874|gb|KNA19906.1| (hypothetical protein SOVF_057290 [Spinacia oleracea])

HSP 1 Score: 537.0 bits (1382), Expect = 2.000e-149
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF
Sbjct: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180

Query: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240
           KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI
Sbjct: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240

Query: 241 DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV 274
           DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV
Sbjct: 241 DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV 273

[Close]

BLAST of Spo00163.1 vs. NCBI nr
Match: gi|731315338|ref|XP_010690940.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 456.1 bits (1172), Expect = 4.400e-125
Identity = 232/264 (87.88%), Postives = 245/264 (92.80%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAF G+IPERRVRIHA RPVNTNSLAFLVTVLLLFMILNS+QMSPNF
Sbjct: 1   MSFVFRGTRADIENAFPGMIPERRVRIHATRPVNTNSLAFLVTVLLLFMILNSNQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFL+ATSLRMYATCQ LQAQAQAHAVAASGLLRHTELRL MPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLLATSLRMYATCQHLQAQAQAHAVAASGLLRHTELRLHMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAP++ SMSE+EIN+LPVHKYKV   +SD+  
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPAISSMSEEEINALPVHKYKVNSAESDITE 180

Query: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240
           K+QASSSAS EK Q+ISIN G    SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI
Sbjct: 181 KQQASSSASLEKGQEISINVG----SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240

Query: 241 DPWLRQQGTCPVCKFKVGTSWHED 265
           DPWL+QQGTCPVCKFKVG  WH+D
Sbjct: 241 DPWLKQQGTCPVCKFKVGAGWHDD 260

[Close]

BLAST of Spo00163.1 vs. NCBI nr
Match: gi|731315336|ref|XP_010690932.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 451.4 bits (1160), Expect = 1.100e-123
Identity = 232/265 (87.55%), Postives = 245/265 (92.45%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAF G+IPERRVRIHA RPVNTNSLAFLVTVLLLFMILNS+QMSPNF
Sbjct: 1   MSFVFRGTRADIENAFPGMIPERRVRIHATRPVNTNSLAFLVTVLLLFMILNSNQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFL+ATSLRMYATCQ LQAQAQAHAVAASGLLRHTELRL MPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLLATSLRMYATCQHLQAQAQAHAVAASGLLRHTELRLHMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAP++ SMSE+EIN+LPVHKYKV   +SD+  
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPAISSMSEEEINALPVHKYKVNSAESDITE 180

Query: 181 KKQASSSASSE-KQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240
           K+QASSSAS E K Q+ISIN G    SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC
Sbjct: 181 KQQASSSASLEQKGQEISINVG----SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240

Query: 241 IDPWLRQQGTCPVCKFKVGTSWHED 265
           IDPWL+QQGTCPVCKFKVG  WH+D
Sbjct: 241 IDPWLKQQGTCPVCKFKVGAGWHDD 261

[Close]

BLAST of Spo00163.1 vs. NCBI nr
Match: gi|359486786|ref|XP_002283148.2| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X2 [Vitis vinifera])

HSP 1 Score: 424.1 bits (1089), Expect = 1.900e-115
Identity = 219/276 (79.35%), Postives = 240/276 (86.96%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60
           MSFVFRG+RADIE+ F G IPERR VR+HAARPVNTNSLAFLVTVLLLFMILNSHQMSPN
Sbjct: 1   MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGR 120
           FL+WLV G FLMAT+LRMYATCQQLQAQAQAHA AASGLL HTELRL MPPSIA ATRGR
Sbjct: 61  FLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGR 120

Query: 121 LQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMV 180
           LQGLRLQLALLDREFDDLDYETLRALD++N P+ PSMSE+EIN+LPVHKYKV G      
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGS 180

Query: 181 AKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240
           + +Q SSSAS+EK+QDI+ N  +S  + +DELTCSVCLEQVNVGELIRSLPCLHQ+HANC
Sbjct: 181 SMQQGSSSASAEKKQDIN-NAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFKVGTSWHEDGHD--DASYMV 274
           IDPWLRQQGTCPVCKF+    W E+G    DASYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 275

[Close]

BLAST of Spo00163.1 vs. NCBI nr
Match: gi|720003057|ref|XP_010256867.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 423.7 bits (1088), Expect = 2.400e-115
Identity = 226/277 (81.59%), Postives = 242/277 (87.36%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60
           MSFVFRGTRADIE+ F GIIPERR VR+ AARPVNTNS+AFLVTVLLLFMILNSHQMSPN
Sbjct: 42  MSFVFRGTRADIESGFPGIIPERRPVRVPAARPVNTNSMAFLVTVLLLFMILNSHQMSPN 101

Query: 61  FLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGR 120
           FLLWL  G FLMATSLRMYATCQQ QAQAQAHA  ASGLL HTELRL MPPSIAFATRGR
Sbjct: 102 FLLWLFLGVFLMATSLRMYATCQQFQAQAQAHAAVASGLLGHTELRLHMPPSIAFATRGR 161

Query: 121 LQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMV 180
           LQGLRLQLALLDREFDDLDYETLRALDADNA +VPSMSE+EIN+LPVHKYKVT   SD  
Sbjct: 162 LQGLRLQLALLDREFDDLDYETLRALDADNASTVPSMSEEEINALPVHKYKVTVPHSDGS 221

Query: 181 AKKQASSSAS-SEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHAN 240
           + KQASSS+S +EK+QD+S   GS K + EDELTCSVCLEQVNVGELIRSLPCLHQ+HAN
Sbjct: 222 SVKQASSSSSAAEKKQDVSKVDGSIK-APEDELTCSVCLEQVNVGELIRSLPCLHQFHAN 281

Query: 241 CIDPWLRQQGTCPVCKFKVGTSWHEDGHD--DASYMV 274
           CIDPWLRQQGTCPVCKF+  + W E+G    D SYMV
Sbjct: 282 CIDPWLRQQGTCPVCKFRAASGWQENGESGVDNSYMV 317

[Close]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK63_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057290 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 1.400e-149
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF
Sbjct: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180

Query: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240
           KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI
Sbjct: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240

Query: 241 DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV 274
           DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV
Sbjct: 241 DPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV 273

[Close]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CXN8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025160 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 3.100e-125
Identity = 232/264 (87.88%), Postives = 245/264 (92.80%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAF G+IPERRVRIHA RPVNTNSLAFLVTVLLLFMILNS+QMSPNF
Sbjct: 1   MSFVFRGTRADIENAFPGMIPERRVRIHATRPVNTNSLAFLVTVLLLFMILNSNQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFL+ATSLRMYATCQ LQAQAQAHAVAASGLLRHTELRL MPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLLATSLRMYATCQHLQAQAQAHAVAASGLLRHTELRLHMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAP++ SMSE+EIN+LPVHKYKV   +SD+  
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPAISSMSEEEINALPVHKYKVNSAESDITE 180

Query: 181 KKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240
           K+QASSSAS EK Q+ISIN G    SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI
Sbjct: 181 KQQASSSASLEKGQEISINVG----SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCI 240

Query: 241 DPWLRQQGTCPVCKFKVGTSWHED 265
           DPWL+QQGTCPVCKFKVG  WH+D
Sbjct: 241 DPWLKQQGTCPVCKFKVGAGWHDD 260

[Close]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FRH8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025160 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 7.600e-124
Identity = 232/265 (87.55%), Postives = 245/265 (92.45%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERRVRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNF 60
           MSFVFRGTRADIENAF G+IPERRVRIHA RPVNTNSLAFLVTVLLLFMILNS+QMSPNF
Sbjct: 1   MSFVFRGTRADIENAFPGMIPERRVRIHATRPVNTNSLAFLVTVLLLFMILNSNQMSPNF 60

Query: 61  LLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGRL 120
           LLWLVFGFFL+ATSLRMYATCQ LQAQAQAHAVAASGLLRHTELRL MPPSIAFATRGRL
Sbjct: 61  LLWLVFGFFLLATSLRMYATCQHLQAQAQAHAVAASGLLRHTELRLHMPPSIAFATRGRL 120

Query: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVA 180
           QGLRLQLALLDREFDDLDYETLRALDADNAP++ SMSE+EIN+LPVHKYKV   +SD+  
Sbjct: 121 QGLRLQLALLDREFDDLDYETLRALDADNAPAISSMSEEEINALPVHKYKVNSAESDITE 180

Query: 181 KKQASSSASSE-KQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240
           K+QASSSAS E K Q+ISIN G    SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC
Sbjct: 181 KQQASSSASLEQKGQEISINVG----SSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240

Query: 241 IDPWLRQQGTCPVCKFKVGTSWHED 265
           IDPWL+QQGTCPVCKFKVG  WH+D
Sbjct: 241 IDPWLKQQGTCPVCKFKVGAGWHDD 261

[Close]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Match: D7TLR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01960 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.300e-115
Identity = 219/276 (79.35%), Postives = 240/276 (86.96%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60
           MSFVFRG+RADIE+ F G IPERR VR+HAARPVNTNSLAFLVTVLLLFMILNSHQMSPN
Sbjct: 1   MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGR 120
           FL+WLV G FLMAT+LRMYATCQQLQAQAQAHA AASGLL HTELRL MPPSIA ATRGR
Sbjct: 61  FLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGR 120

Query: 121 LQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMV 180
           LQGLRLQLALLDREFDDLDYETLRALD++N P+ PSMSE+EIN+LPVHKYKV G      
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGS 180

Query: 181 AKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240
           + +Q SSSAS+EK+QDI+ N  +S  + +DELTCSVCLEQVNVGELIRSLPCLHQ+HANC
Sbjct: 181 SMQQGSSSASAEKKQDIN-NAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFKVGTSWHEDGHD--DASYMV 274
           IDPWLRQQGTCPVCKF+    W E+G    DASYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 275

[Close]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Match: A0A151RQE1_CAJCA (Protein goliath OS=Cajanus cajan GN=KK1_033735 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 6.400e-115
Identity = 215/274 (78.47%), Postives = 241/274 (87.96%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQGIIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60
           MSFVFRGTRADIEN F G IPERR +R+HAARP N+NSL FLVTVLLLFMILNSHQMSPN
Sbjct: 1   MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRGR 120
           FLLWLV G FLMAT LRMYATCQQLQAQAQAHA AASG+L HTELRL MPPSIA A+RGR
Sbjct: 61  FLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGR 120

Query: 121 LQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMV 180
           LQGLRLQLALLDREFDDLDYETLRALD+DN  + PSM+E+EIN+LPVHKYKV+G  S   
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSSSS 180

Query: 181 AKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANC 240
           + +QASSSAS EK+QD S   GS K +S+DELTCSVCLEQVNVG+++RSLPCLHQ+HANC
Sbjct: 181 SMQQASSSASVEKKQDNSNAVGSMK-ASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFKVGTSWHEDGHDDASYMV 274
           IDPWLRQQGTCPVCKF+ G+ W+E+GH+D + MV
Sbjct: 241 IDPWLRQQGTCPVCKFRAGSGWNENGHNDIADMV 273

[Close]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.300e-104
Identity = 201/277 (72.56%), Postives = 226/277 (81.59%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQG-IIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRG+R D+E+ F G  +PERR +R+H ARPVN+NSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60

Query: 61  NFLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRG 120
           NFLLWLV G FLMAT+LRMYATCQQLQA AQA A AASGL  HTELRL +PPSIA ATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDM 180
           RLQGLRLQLALLDREFDDLDYETLRALD+DN  S  SMSE+EIN+LPVHKYKV   ++  
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNV-STTSMSEEEINALPVHKYKVLDPENGC 180

Query: 181 VAKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHAN 240
              KQAS+S+S+EK  D   +   SK  +EDELTCSVCLEQV VGE++R+LPCLHQ+HA 
Sbjct: 181 SLAKQASTSSSAEKMLD---SANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLRQQGTCPVCKFKVGTSWHEDGH--DDASYMV 274
           CIDPWLRQQGTCPVCKF+  + W E     DDAS MV
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273

[Close]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Match: RNF43_HUMAN (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.300e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1


		  
Query: 201 GSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKV--G 260
           GSS SS+     C++CLE+ + G+ +R + CLH++H NC+DPWL Q  TCP+C F +  G
Sbjct: 263 GSSCSSAP---VCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEG 322

Query: 261 TSWHEDGHDDASY 272
            S+ +      SY
Sbjct: 323 DSFSQSLGPSRSY 332

[Close]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Match: DZIP3_MOUSE (E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-10
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 1


		  
Query: 134  FDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDMVAKKQASSSASSEKQ 193
            FD++ Y+  + ++   + S    ++D  N+ P H         D    K A  SA+ E  
Sbjct: 1075 FDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHTASQPNAPQD---PKSAQGSATWEGD 1134

Query: 194  QDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVC 253
            +D+        +  E+E  C +C E ++  E +  LPC H++H+ CI PWL QQGTCP C
Sbjct: 1135 KDMD-------NEEEEEEPCVICHENLSP-ENLSVLPCAHKFHSQCIRPWLMQQGTCPTC 1194

Query: 254  KFKVGTSWHEDGH 267
            +  V       GH
Sbjct: 1195 RLHVLQPEEFPGH 1196

[Close]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Match: RMR1_ARATH (Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana GN=RMR1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.800e-10
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1


		  
Query: 212 TCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGT-CPVCKFKVGT 260
           TC++CLE    GE +R LPC H +H NCID WL + GT CPVCK  + T
Sbjct: 231 TCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDIRT 279

[Close]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 3.600e-10
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1


		  
Query: 212 TCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKVGTSWHED 265
           TCSVC+ +   G  +R LPC H+YH +CID WL +  TCP+C+  V +S + +
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597

[Close]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Match: AT3G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 379.4 bits (973), Expect = 1.900e-105
Identity = 201/277 (72.56%), Postives = 226/277 (81.59%), Query Frame = 1


		  
Query: 1   MSFVFRGTRADIENAFQG-IIPERR-VRIHAARPVNTNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRG+R D+E+ F G  +PERR +R+H ARPVN+NSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60

Query: 61  NFLLWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAASGLLRHTELRLQMPPSIAFATRG 120
           NFLLWLV G FLMAT+LRMYATCQQLQA AQA A AASGL  HTELRL +PPSIA ATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDADNAPSVPSMSEDEINSLPVHKYKVTGIDSDM 180
           RLQGLRLQLALLDREFDDLDYETLRALD+DN  S  SMSE+EIN+LPVHKYKV   ++  
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNV-STTSMSEEEINALPVHKYKVLDPENGC 180

Query: 181 VAKKQASSSASSEKQQDISINPGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHAN 240
              KQAS+S+S+EK  D   +   SK  +EDELTCSVCLEQV VGE++R+LPCLHQ+HA 
Sbjct: 181 SLAKQASTSSSAEKMLD---SANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLRQQGTCPVCKFKVGTSWHEDGH--DDASYMV 274
           CIDPWLRQQGTCPVCKF+  + W E     DDAS MV
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273

[Close]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Match: AT1G04790.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-12
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1


		  
Query: 200 PGSSKSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKV 258
           P S+  +   + TC +CLE   +G+ IR LPCLH++H +CIDPWL +  +CPVCK  V
Sbjct: 576 PESTVQTDNFQETCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCKSSV 633

[Close]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Match: AT5G08139.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 7.000e-12
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1


		  
Query: 204 KSSSEDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKVGTSWHE 263
           ++  +  L C+VC +++N+G     LPC H+YH+ CI PWL+ + TCPVC++++ T    
Sbjct: 300 ENDDDGGLVCAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPT---- 359

Query: 264 DGHDDASY 272
              DDA Y
Sbjct: 360 ---DDAEY 360

[Close]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Match: AT5G66160.1 (receptor homology region transmembrane domain ring H2 motif protein 1)

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-11
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1


		  
Query: 212 TCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGT-CPVCKFKVGT 260
           TC++CLE    GE +R LPC H +H NCID WL + GT CPVCK  + T
Sbjct: 231 TCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDIRT 279

[Close]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Match: AT3G58720.2 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 2.000e-11
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 1


		  
Query: 199 NPGSSKSSS-------EDELTCSVCLEQVNVGELIRSLPCLHQYHANCIDPWLRQQGTCP 258
           NPGS  S +       ED+  CSVCLE     E +   PC H +H  CI PWL+ +G CP
Sbjct: 151 NPGSESSRNTQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCP 210

Query: 259 VCKFKVGTSWHEDGHDDAS 271
           VC+F +     +D    A+
Sbjct: 211 VCRFVILKPTKQDSSPPAN 229

The following BLAST results are available for this feature:

BLAST of Spo00163.1 vs. NCBI nr
BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
BLAST of Spo00163.1 vs. TAIR (Arabidopsis)

BLAST of Spo00163.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902224874\|gb\|KNA19906.1\|	2.0e-149	100.	hypothetical protein SOVF_0572...	[more]
gi\|731315338\|ref\|XP_010690940.1\|	4.4e-125	87.8	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|731315336\|ref\|XP_010690932.1\|	1.1e-123	87.5	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|359486786\|ref\|XP_002283148.2\|	1.9e-115	79.3	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|720003057\|ref\|XP_010256867.1\|	2.4e-115	81.5	PREDICTED: E3 ubiquitin-protei...	[more]

BLAST of Spo00163.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RK63_SPIOL	1.4e-149	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CXN8_BETVU	3.1e-125	87.8	Uncharacterized protein OS=Bet...	[more]
A0A0J8FRH8_BETVU	7.6e-124	87.5	Uncharacterized protein OS=Bet...	[more]
D7TLR3_VITVI	1.3e-115	79.3	Putative uncharacterized prote...	[more]
A0A151RQE1_CAJCA	6.4e-115	78.4	Protein goliath OS=Cajanus caj...	[more]

BLAST of Spo00163.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SDIR1_ARATH	3.3e-104	72.5	E3 ubiquitin-protein ligase SD...	[more]
RNF43_HUMAN	4.3e-11	42.4	E3 ubiquitin-protein ligase RN...	[more]
DZIP3_MOUSE	1.6e-10	30.8	E3 ubiquitin-protein ligase DZ...	[more]
RMR1_ARATH	2.8e-10	55.1	Receptor homology region, tran...	[more]
RNF12_MOUSE	3.6e-10	45.2	E3 ubiquitin-protein ligase RL...	[more]

BLAST of Spo00163.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G55530.1	1.9e-105	72.5	RING/U-box superfamily protein	[more]
AT1G04790.1	1.4e-12	48.2	RING/U-box superfamily protein	[more]
AT5G08139.1	7.0e-12	39.7	RING/U-box superfamily protein	[more]
AT5G66160.1	1.6e-11	55.1	receptor homology region trans...	[more]
AT3G58720.2	2.0e-11	39.2	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 212..254 score: 4.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 213..253 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 213..254 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 208..257 score: 1.4
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 1..263 score: 4.2E
None	No IPR available	PANTHER	PTHR22763:SF30	E3 UBIQUITIN-PROTEIN LIGASE SDIR1	coord: 1..263 score: 4.2E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 207..260 score: 5.01

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0009789	positive regulation of abscisic acid-activated signaling pathway
biological_process	GO:0006301	postreplication repair
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031090	organelle membrane
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16981	0.72	Barchart \| Table
Spo10814	0.68	Barchart \| Table
Spo16218	0.66	Barchart \| Table
Spo24841	0.66	Barchart \| Table