Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAGCACACGTGTTTTCTTTTAAAATAAGAAAAAACACATAAGATTCTTGAGAATTCATTACCCAAGTTAATCCACGGTGGTCCAATCTCACAATCCCAACTTGAAAATATTATTTGATCAGCAGAATTTCACCGGCACTCTACATACCTTTTCTTTTTCCAACAATCCATCTGAAAAACTCAACAAATTTCCCATCAAACTTTTTGAAGGGTTTTTTTGGGTTAATTTCTAGACGCACAAGATATAAAGGGGTCAGCAATTAACGGAAAAGCGGGAAAGGGAAAGGAGGTAAAGAATTGATTCGATTTTCATAAAAGTTTTCCCCTTATTACCCATTTTTCTTGCTAAAAAGGTTCAATCTTTTGATTTTTGGTGTGATTCTATAATACCCAGATCGTTAATTTTTGTGGGGTTGTTTTGTTTTTGTGAGATTTGTGTTTTTGGTTGTTGGGAATTTTCTATCTGATTTTGCCCAGGTAAATTTGTTTGTGTTGAAATTAATGTAATTTTTTTGCGTTTATATGGAGAACATTTTGTTGAATTGTTTGATCTCAGCTGTTGCATGGTGATTTTTGTTGGATTGGGAGTGTGAAGGTTAATTTTTGTTTATTGCTGAATTTTCTGAACATTTTAGTTGTTTTTCAGTTTGAAATCAAAGTTGGGTAGCTGGGTTCTGAATTATATGTTAATTTGAAGAAATTTATGTCTGAATATCGATTTTGGGATATGTTAGATATTGTAATGTGATAATCCATTCAAATTCAATGTCTTGTGGGATTTCTTCAGCTGAATTTGATATTATTTGTGGTGTTTTAGCAGAAAAAGTTATTATTTGTTGATTTTGATTCACTTGCAGAATCAATGCCAGTCACCTTGTACATTTTTATTGCTGGATTTTTTAATCATGGCACATGGCCTCAACTATGCGAAACTCGAATTTTTCTTAAATGGCGCTACATATGTAATGCTTCAAGAGTCTTTGAGGAATTTGAATTGCTAATTGCTTTGCTGTTTTATACTAAGAGCGAAAACTCAGAGGAATTTGAGAAAGAATATAGTTTTTTACTTCTATTTAGTTAAAAATTACATACACACATGATTTTATTTAGTTATCTTTCTCCCTATACCCTATCAATCTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACTCACCTACCCCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTATCATGTATTATAATAACACCATTATTTAAATTTGATTCCAAAATACGCACATTGCGTCGCACTCGCACATGTCAAAAGCTAGTAGCTAGTTATTTGGAAGTAAACGTTTAAAACATTAAATTTTAGATGATATGTGAAGATAACATAGGTTTATGGCCAATAATAACTTAATCTTAACATCCTTACCTATGTGAAGACATAATGAAACTATACTTTAACCCTTCATCTTTATGTACTACAAGTCTTATATGCACGCGATGCGTGCGAATATAAGAAATATATTTGTGTTATTTTATTTAAACATGAAATAATATGTAAAAAGTATAATATAAATGCAATACGTGCGAATATAAGAAACGGTTAAACGGATAATTTAAATGCAATACGTGCGAATATAAGAAACATATTTGTGTTATTATAATTTAAATTCAAGGTGTACACCACCAATAGATTTACTAAAATAACCTCAGTTTTTCACTTATGTAATAGAGATACTACATATAGGCCCTGTTTAGTTCACCTTATTCCATATTTCAGATTTAATCAGATCAAAACTGATTTGTACAGATCATGTCTAGATCAAACTGATTTGTACAAATCATGTCCAGATCAGAATTGATATACAAAGATCATGTCCAGATCAGAACCGATCTCTCCAGGTCAGAACCAGTACATGCATGGTAGTTCCGATTCAACCCTTAACTTTGACTTGTTTTGGTTTGGTATAAGCTTTGATTTTGTGGACAAGTCCATGGGGCTTTTCACAAACAGATCCTGGTATAGTTTATGTCCATAGAAATGATAATACCTATAACACTTAAGCTGCATATTTAGGGATGTTTGTTGATCCTTTATAGGCTGGGAGCACTATTCATGCGTAGTATGTCTTGGCTGCAAATATAGGCCATAACAGTTTAACATGCAAGTCTCAGATTGTCTTTTGACAATGGAATGGTATAGCTGTTGATGCTGTCAAGTCGTTATATATTTACTAATTATTTCGAGAGGGCTTAATCAACTTCATAGTTTGAATTATTAAGGAACCTTTAGATCTACATTTCATTATGAGAGACTTAGTCATCAGTGGTTTCACACCGAGCAGGGCTTCAGTTCTTATGTATCTGATGTGCTTAGCTTGGTTTTTTGTTAGACATTGTTTAAGTTTGATCATATAGCATGGCTTAGACGTGGTCTTCTATGTTGCCTACGCTTCATCAGGTCATACTAGTCAAGTGTCACCTATGTTAAGGATGCGTAGCTAATGGTTTGGTCGCCAAATTTTGTTTCGTATCTGTACGTATGTATGTGTTTGTATTTTTGTAATGAATGCGATATATGTATTAAAAAGGTGGTGACGTGAAATCGTAGATGGAAAGCGAAGTGACTGAGCGTCAAGCAAAAGAACGCCTGAGGACAAAATGGACAGCTCCCCTTGATAAGATTTTTGCAGACTTGGTTGTGGAACAGATTCAATTGGGAAATAGACCAAATAACATTTTTGACAAGAAGAGTTGGGGCTACATACGTGACGAATTCAATAAGAAAACGGCTCTAAACTTCAATAACAACCAATTGAGAAAACACCTAGATGTTCTCCGTGTCCGGTATAACCAGGTTAAATCTGCTTTAGTTCAAAATGATTTCATCATGGAAGATTCATGCTCCACTGGATTTGACTTATGGGAAGGCATAGAGGTATATACTCCCTAGTTTTTTCTGCATTCTTTTACGAAGTATTGTTTTTTTTTTATAAAATTTTGTCCATTGTTGTTGTCGAGTTGGCAATAAGTTCGTTGTGCTATTGGACTTTCAGGTGAATCCTAGACCAGAAGCAGTTAAAATTAAGGACTGCCCCATCTACGAGCAATTATGCATTATATTTGTTGATAGTGGGGCTGATGGGAGATATGCTCAATCAAGCCATTATGAGGAGGTTGAACATAAATCTAGAGCAAATAATGGTAATCATATAGGTTTAGCATCTGTTAGGGAAACTGAGGCAGCAACTCCTGAAGCTGCATCATCAATGAAATCCACGCAAGTGAATATTTCTTCGGTTGTAAAGGGAGGCAAGACTAATTTGGAGAAAAAGAGGAAGCATACATCTGAGGTAGATCAAAATGGAGAACAACGAAGGGAGCAAGAAATACTCGATTCTATGGCAGAAGCAATGTTAGATATGATTGGTTCCTCTAAGCTGAGGACAATTACAAAGACAGAATGTAAGGAAATGTTCTCTATCACAAATTGCATTAAGGCATTGGATGAAATTGGAAGCATGGGAGAGTCATTGTACTTTGCGGCTTTGGATCTCTTTGATGATCCTAATATAAGAGAAACCTTCATATTGCTTAATGGTGTGGATAGAAGATTGTGTTGGTTACAGGAGCAGTGCAGTTCAACTAGTTGCTTTGAAGCACTAGGACACATTAGCTATAGAGATTAACTGTTAATGGAGTGAACTTTCTGTAATTATTAGGACAAACTAATTTAGGGATCATTCAGTAAAAATAGACAGAATTATTATAAGCATCTCAAGGCAATGAAGTGGATCTCCAAAATCAAGAGTTTGGAGTTTCTTTATTTTACACAGATAGGGTCTTCACTGTAAGCTGTAATCCACATGTATCACATTTAATTGCACTAGTAATATTAGACATATATGCAATTAGCAGAAGACATTTACACGTCAGGCTTGAATGCAATAGATCCAAATAGACGTTATACAGTCTAAGATTAAA TAAAGCACACGTGTTTTCTTTTAAAATAAGAAAAAACACATAAGATTCTTGAGAATTCATTACCCAAGTTAATCCACGGTGGTCCAATCTCACAATCCCAACTTGAAAATATTATTTGATCAGCAGAATTTCACCGGCACTCTACATACCTTTTCTTTTTCCAACAATCCATCTGAAAAACTCAACAAATTTCCCATCAAACTTTTTGAAGGGTTTTTTTGGGTTAATTTCTAGACGCACAAGATATAAAGGGGTCAGCAATTAACGGAAAAGCGGGAAAGGGAAAGGAGGTGGTGACGTGAAATCGTAGATGGAAAGCGAAGTGACTGAGCGTCAAGCAAAAGAACGCCTGAGGACAAAATGGACAGCTCCCCTTGATAAGATTTTTGCAGACTTGGTTGTGGAACAGATTCAATTGGGAAATAGACCAAATAACATTTTTGACAAGAAGAGTTGGGGCTACATACGTGACGAATTCAATAAGAAAACGGCTCTAAACTTCAATAACAACCAATTGAGAAAACACCTAGATGTTCTCCGTGTCCGGTATAACCAGGTTAAATCTGCTTTAGTTCAAAATGATTTCATCATGGAAGATTCATGCTCCACTGGATTTGACTTATGGGAAGGCATAGAGGTGAATCCTAGACCAGAAGCAGTTAAAATTAAGGACTGCCCCATCTACGAGCAATTATGCATTATATTTGTTGATAGTGGGGCTGATGGGAGATATGCTCAATCAAGCCATTATGAGGAGGTTGAACATAAATCTAGAGCAAATAATGGTAATCATATAGGTTTAGCATCTGTTAGGGAAACTGAGGCAGCAACTCCTGAAGCTGCATCATCAATGAAATCCACGCAAGTGAATATTTCTTCGGTTGTAAAGGGAGGCAAGACTAATTTGGAGAAAAAGAGGAAGCATACATCTGAGGTAGATCAAAATGGAGAACAACGAAGGGAGCAAGAAATACTCGATTCTATGGCAGAAGCAATGTTAGATATGATTGGTTCCTCTAAGCTGAGGACAATTACAAAGACAGAATGTAAGGAAATGTTCTCTATCACAAATTGCATTAAGGCATTGGATGAAATTGGAAGCATGGGAGAGTCATTGTACTTTGCGGCTTTGGATCTCTTTGATGATCCTAATATAAGAGAAACCTTCATATTGCTTAATGGTGTGGATAGAAGATTGTGTTGGTTACAGGAGCAGTGCAGTTCAACTAGTTGCTTTGAAGCACTAGGACACATTAGCTATAGAGATTAACTGTTAATGGAGTGAACTTTCTGTAATTATTAGGACAAACTAATTTAGGGATCATTCAGTAAAAATAGACAGAATTATTATAAGCATCTCAAGGCAATGAAGTGGATCTCCAAAATCAAGAGTTTGGAGTTTCTTTATTTTACACAGATAGGGTCTTCACTGTAAGCTGTAATCCACATGTATCACATTTAATTGCACTAGTAATATTAGACATATATGCAATTAGCAGAAGACATTTACACGTCAGGCTTGAATGCAATAGATCCAAATAGACGTTATACAGTCTAAGATTAAA ATGGAAAGCGAAGTGACTGAGCGTCAAGCAAAAGAACGCCTGAGGACAAAATGGACAGCTCCCCTTGATAAGATTTTTGCAGACTTGGTTGTGGAACAGATTCAATTGGGAAATAGACCAAATAACATTTTTGACAAGAAGAGTTGGGGCTACATACGTGACGAATTCAATAAGAAAACGGCTCTAAACTTCAATAACAACCAATTGAGAAAACACCTAGATGTTCTCCGTGTCCGGTATAACCAGGTTAAATCTGCTTTAGTTCAAAATGATTTCATCATGGAAGATTCATGCTCCACTGGATTTGACTTATGGGAAGGCATAGAGGTGAATCCTAGACCAGAAGCAGTTAAAATTAAGGACTGCCCCATCTACGAGCAATTATGCATTATATTTGTTGATAGTGGGGCTGATGGGAGATATGCTCAATCAAGCCATTATGAGGAGGTTGAACATAAATCTAGAGCAAATAATGGTAATCATATAGGTTTAGCATCTGTTAGGGAAACTGAGGCAGCAACTCCTGAAGCTGCATCATCAATGAAATCCACGCAAGTGAATATTTCTTCGGTTGTAAAGGGAGGCAAGACTAATTTGGAGAAAAAGAGGAAGCATACATCTGAGGTAGATCAAAATGGAGAACAACGAAGGGAGCAAGAAATACTCGATTCTATGGCAGAAGCAATGTTAGATATGATTGGTTCCTCTAAGCTGAGGACAATTACAAAGACAGAATGTAAGGAAATGTTCTCTATCACAAATTGCATTAAGGCATTGGATGAAATTGGAAGCATGGGAGAGTCATTGTACTTTGCGGCTTTGGATCTCTTTGATGATCCTAATATAAGAGAAACCTTCATATTGCTTAATGGTGTGGATAGAAGATTGTGTTGGTTACAGGAGCAGTGCAGTTCAACTAGTTGCTTTGAAGCACTAGGACACATTAGCTATAGAGATTAA MESEVTERQAKERLRTKWTAPLDKIFADLVVEQIQLGNRPNNIFDKKSWGYIRDEFNKKTALNFNNNQLRKHLDVLRVRYNQVKSALVQNDFIMEDSCSTGFDLWEGIEVNPRPEAVKIKDCPIYEQLCIIFVDSGADGRYAQSSHYEEVEHKSRANNGNHIGLASVRETEAATPEAASSMKSTQVNISSVVKGGKTNLEKKRKHTSEVDQNGEQRREQEILDSMAEAMLDMIGSSKLRTITKTECKEMFSITNCIKALDEIGSMGESLYFAALDLFDDPNIRETFILLNGVDRRLCWLQEQCSSTSCFEALGHISYRD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00247.1 vs. NCBI nr
Match: gi|902167171|gb|KNA07335.1| (hypothetical protein SOVF_172800 [Spinacia oleracea]) HSP 1 Score: 632.1 bits (1629), Expect = 5.300e-178 Identity = 319/320 (99.69%), Postives = 319/320 (99.69%), Query Frame = 1
BLAST of Spo00247.1 vs. NCBI nr
Match: gi|731329245|ref|XP_010675487.1| (PREDICTED: uncharacterized protein LOC104891488 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 486.5 bits (1251), Expect = 3.600e-134 Identity = 247/307 (80.46%), Postives = 268/307 (87.30%), Query Frame = 1
BLAST of Spo00247.1 vs. NCBI nr
Match: gi|1009169012|ref|XP_015902968.1| (PREDICTED: L10-interacting MYB domain-containing protein-like isoform X1 [Ziziphus jujuba]) HSP 1 Score: 345.1 bits (884), Expect = 1.300e-91 Identity = 178/304 (58.55%), Postives = 217/304 (71.38%), Query Frame = 1
BLAST of Spo00247.1 vs. NCBI nr
Match: gi|1009169016|ref|XP_015902970.1| (PREDICTED: L10-interacting MYB domain-containing protein-like isoform X2 [Ziziphus jujuba]) HSP 1 Score: 340.1 bits (871), Expect = 4.100e-90 Identity = 178/304 (58.55%), Postives = 217/304 (71.38%), Query Frame = 1
BLAST of Spo00247.1 vs. NCBI nr
Match: gi|359492223|ref|XP_003634385.1| (PREDICTED: uncharacterized protein LOC100854357 [Vitis vinifera]) HSP 1 Score: 338.2 bits (866), Expect = 1.600e-89 Identity = 176/311 (56.59%), Postives = 223/311 (71.70%), Query Frame = 1
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJ92_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172800 PE=4 SV=1) HSP 1 Score: 632.1 bits (1629), Expect = 3.700e-178 Identity = 319/320 (99.69%), Postives = 319/320 (99.69%), Query Frame = 1
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FB90_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086780 PE=4 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 2.500e-134 Identity = 247/307 (80.46%), Postives = 268/307 (87.30%), Query Frame = 1
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Match: F6H078_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14070 PE=4 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 1.100e-89 Identity = 176/311 (56.59%), Postives = 223/311 (71.70%), Query Frame = 1
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Match: B9R874_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1597410 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 7.800e-88 Identity = 173/310 (55.81%), Postives = 216/310 (69.68%), Query Frame = 1
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Match: W9RFR5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023837 PE=4 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 8.700e-87 Identity = 174/305 (57.05%), Postives = 215/305 (70.49%), Query Frame = 1
BLAST of Spo00247.1 vs. ExPASy Swiss-Prot
Match: LIMYB_ARATH (L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.800e-13 Identity = 80/296 (27.03%), Postives = 121/296 (40.88%), Query Frame = 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Match: AT2G24960.1 (unknown protein) HSP 1 Score: 84.7 bits (208), Expect = 1.100e-16 Identity = 55/190 (28.95%), Postives = 93/190 (48.95%), Query Frame = 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Match: AT4G02210.1 (unknown protein) HSP 1 Score: 80.9 bits (198), Expect = 1.600e-15 Identity = 41/150 (27.33%), Postives = 82/150 (54.67%), Query Frame = 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Match: AT5G05800.1 (unknown protein) HSP 1 Score: 78.2 bits (191), Expect = 1.000e-14 Identity = 80/296 (27.03%), Postives = 121/296 (40.88%), Query Frame = 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Match: AT3G11290.1 (unknown protein) HSP 1 Score: 68.2 bits (165), Expect = 1.100e-11 Identity = 70/301 (23.26%), Postives = 122/301 (40.53%), Query Frame = 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Match: AT3G11310.1 (unknown protein) HSP 1 Score: 64.3 bits (155), Expect = 1.500e-10 Identity = 44/154 (28.57%), Postives = 74/154 (48.05%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00247.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00247.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00247.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo00247.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
Co-expression
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