Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTAGAAACAGGTCAAGTATTAAGAGACGGCCCGATAAGGAAAACAGGTCAAGTATTCCGGGACGGAGGGAGTACTCTCTTTCCGTTGACTAAAAATATTTGAAAATAATGGGGGCAAGTATTTGTGATTGTAACAGAAAATAAATATCCAAATCATATCTGTCATCCTGAATTCCTGATATTCCTTCTTTTCCTCACAAAATTCTCTCTCTTCTTTCTTTCTTTCTTGCTCTCCATTCTTGGATCAAAAAAACCACAAACAGAAGCATTAGCTAGCTGATCAAACAAAATAATGGGAAACGCCCTCAGATTTCTGTACAAGAACTGCATCCACCCTACGACTACAGACTCCCAGTCGTACGGCCCCCACGGTGTTTCTGCACAGAATGCCGGAGTCTCGGCCTTAGCCAAGGATCTCCTCCACTTTGAAGCCACATCCCAGGTAAGGTTTCCCGTTTCCTAATCAAGCATAATCTGGGAATTGGTATCCCATCAAAATGTTAGGTGAAATTAATGAAATAGTTGGTTGGATGTTGATGTTTATGTTTTCCAGGTACCTGAAGGTCTTACTAAGCATGTTGTATCCTCTAAGAAAGCTCAGGCCAACTGGTAAGTTCTACCATTCTACTGATCAAGCTCTTAATTCGAACACAAGAATGCTTTGAATACTTTAAATTAGATCAGAAATAGTCAAACAGACAGTCTACCTGAAATTAGTATGTCCCTTTCTTGATCCAGACTCTATATTTACTCGTCCTCCGACTAGATAATACCTTTAGAGAGGCTGTTACCGGAGGATCCACAGGCTACAGGAGACTGGCAAATTCTGTAATGTAGCGAATTTTAAGGGAAATTTGATCAGTGGATTCCCATGATAGAGTTCAAGATTTTGAGCATATTAGCAACCAAAATCCCTTCAAGAAGCTTCTGACATTGCCCCCACCCCCCTTCCCCTGATACTGGTCACAGACTCACAGACAGTGCTGATTATAGCACACGAGCAAGTCTTGGGTGAAACTGTTTCACGCTAATTTATCAGCGTATGAGACAATAGAAGTTACTCTGTATAAGAATGAGTAGGAAATTTTGAAAAATCATGAGGCATATCGCTAACATGAGATTTTACCCTTCAGGTATAGAAAAATTCTACAAGCATGGAAGGAAGCCAAGCCCCCACCAAAAACCCCAGAGGAAACATCAAGGCTCATCATTGCAACCTTGAAAAACCACCAGAAGGCAGATGTGGAGGTAATTTCCACAAACCCACAACAAAAGATTTCTTAAAATAGCGTGTTTTAGGGAAATGAAATAACATACTAAAAACAATTTTAATTTTGGGGGTATTACTTTATGATGAGCAGGGCTTACTTGCCTTCTATGGCTTGCCTCTTCCTCATTCATTAGTCGAACTGTCAACTGGAGTGCCGTCCGCGCACCCTGATGGGGTGAAGTACGAGCTCCATACTTTACCGGTAAGACCCTTTTCTCTTTCTCTTGCTCCAAATTGATAAATCAGGAAGACTAAACCTGAAAAGAAAACAGGTGGATGCAAAGGCAGTAGCAGATGGAGATACCATAACTGTATATGTAAGTACTGCAGACCCTCGAGAGTCTTCTTCAGTTCCTAAAGAAGTGCACACTGCGGCAATCCAACGGTCAAAGGCACGTGCCGAGAGAGATTATCCCAAGGCAGATGCCCTTCATAAGAAAATAATCGATCAGAATTACAGGTTTTTACGTTTTTTTCCAAATTTATTTAAATCGTTGGCACACAAGAGCTCTAAAAAAACAGGAACTTAAGAATTTCTTTCATGTCACAGGGTTATTCCTATTCAAAATGATGAAGTTCTAGCCAAAAAGTATCGGATTCGATTAAGGTATTATAAATCATGATAAAAATACCATTAGTAACAACTTGAGCTCTATCTGCCAATTTTGTAATGCCTATGAAAAGAATTCAGGGGAATAGATGCACCTGAGAGTGCAATGCCATTCGGGAAGCAGGCGAAAGAGGAGCTGACTAATCTTGTACAAGGAAAGAGCTTAAGGGTTCTCGTCTATGGAGAAGACCGTTATAGTCGCTATGTAGGGGACATCTACTGCAACGGCATATTTGCACAGGTACTTCACTCCCTTGCATGATCTACCATTGCAATTTCCCTTTCATGGGAGTCAGTGTGATCTTTGAACTTAACTATAATACCATTACATGGCTTAATTCTTTCACCCTCCAAAAAGTTATTGACTCCCCACTTAAAATGAATCTTTGAGACTAATATGTCACCCTTATAACAGGAAGTGATGCTGAAGAAAGGATTAGCATGGCACTACGCAGCCTACGACCGCCGTGCAGAACTAGCAAATGTAAGAAAAGCATAATATAATAAATTATTCTACTTATATCCAAACTCTTATACTTAGAATGTACATAATGATCATTGACACAGTGGGAAAAGGAGGCACGGGCTAAGAGGGTAGGGCTATGGGCTTCAAAAAATGCAGAGGAGCCATGGGAATGGAGAAAAAACAAACGTGAAGGAAGATAAATAACACGCAGTGAAAGCTAGAATCAAGATACAATTTCCTCAACTTTACTGGAAGCAGTGTGAATGATACAGAGAGGCACTATTATTGTACAACATGTATTGATTTTGTTGAATATTATGTATATTGTTTATGTTTTATTGTTTATTAGTCACTCCTGTATTTGAGCAATATCTTTTAGGCTGCAATAAACAAGCATCAATACAAGCGGAATGGAACTTCCGGCCAGCAATCATACCATTTCTATCAGTGAATTAAGAACTTCGTATAAAATATGCAACAACGACAAACAAAAAATGCAATTCCAGCAACAAGGGTGACCATCTTGTCATCCAATGAAACCTCGGTTGATCAATGGGAACTTTTTCCTTTTTTAACAAAAAGGCCAAATGTAAGATTTACAGGACTATAAGT TTTTAGAAACAGGTCAAGTATTAAGAGACGGCCCGATAAGGAAAACAGGTCAAGTATTCCGGGACGGAGGGAGTACTCTCTTTCCGTTGACTAAAAATATTTGAAAATAATGGGGGCAAGTATTTGTGATTGTAACAGAAAATAAATATCCAAATCATATCTGTCATCCTGAATTCCTGATATTCCTTCTTTTCCTCACAAAATTCTCTCTCTTCTTTCTTTCTTTCTTGCTCTCCATTCTTGGATCAAAAAAACCACAAACAGAAGCATTAGCTAGCTGATCAAACAAAATAATGGGAAACGCCCTCAGATTTCTGTACAAGAACTGCATCCACCCTACGACTACAGACTCCCAGTCGTACGGCCCCCACGGTGTTTCTGCACAGAATGCCGGAGTCTCGGCCTTAGCCAAGGATCTCCTCCACTTTGAAGCCACATCCCAGGTACCTGAAGGTCTTACTAAGCATGTTGTATCCTCTAAGAAAGCTCAGGCCAACTGGTATAGAAAAATTCTACAAGCATGGAAGGAAGCCAAGCCCCCACCAAAAACCCCAGAGGAAACATCAAGGCTCATCATTGCAACCTTGAAAAACCACCAGAAGGCAGATGTGGAGGGCTTACTTGCCTTCTATGGCTTGCCTCTTCCTCATTCATTAGTCGAACTGTCAACTGGAGTGCCGTCCGCGCACCCTGATGGGGTGAAGTACGAGCTCCATACTTTACCGGTGGATGCAAAGGCAGTAGCAGATGGAGATACCATAACTGTATATGTAAGTACTGCAGACCCTCGAGAGTCTTCTTCAGTTCCTAAAGAAGTGCACACTGCGGCAATCCAACGGTCAAAGGCACGTGCCGAGAGAGATTATCCCAAGGCAGATGCCCTTCATAAGAAAATAATCGATCAGAATTACAGGGTTATTCCTATTCAAAATGATGAAGTTCTAGCCAAAAAGTATCGGATTCGATTAAGGGGAATAGATGCACCTGAGAGTGCAATGCCATTCGGGAAGCAGGCGAAAGAGGAGCTGACTAATCTTGTACAAGGAAAGAGCTTAAGGGTTCTCGTCTATGGAGAAGACCGTTATAGTCGCTATGTAGGGGACATCTACTGCAACGGCATATTTGCACAGGAAGTGATGCTGAAGAAAGGATTAGCATGGCACTACGCAGCCTACGACCGCCGTGCAGAACTAGCAAATTGGGAAAAGGAGGCACGGGCTAAGAGGGTAGGGCTATGGGCTTCAAAAAATGCAGAGGAGCCATGGGAATGGAGAAAAAACAAACGTGAAGGAAGATAAATAACACGCAGTGAAAGCTAGAATCAAGATACAATTTCCTCAACTTTACTGGAAGCAGTGTGAATGATACAGAGAGGCACTATTATTGTACAACATGTATTGATTTTGTTGAATATTATGTATATTGTTTATGTTTTATTGTTTATTAGTCACTCCTGTATTTGAGCAATATCTTTTAGGCTGCAATAAACAAGCATCAATACAAGCGGAATGGAACTTCCGGCCAGCAATCATACCATTTCTATCAGTGAATTAAGAACTTCGTATAAAATATGCAACAACGACAAACAAAAAATGCAATTCCAGCAACAAGGGTGACCATCTTGTCATCCAATGAAACCTCGGTTGATCAATGGGAACTTTTTCCTTTTTTAACAAAAAGGCCAAATGTAAGATTTACAGGACTATAAGT ATGGGAAACGCCCTCAGATTTCTGTACAAGAACTGCATCCACCCTACGACTACAGACTCCCAGTCGTACGGCCCCCACGGTGTTTCTGCACAGAATGCCGGAGTCTCGGCCTTAGCCAAGGATCTCCTCCACTTTGAAGCCACATCCCAGGTACCTGAAGGTCTTACTAAGCATGTTGTATCCTCTAAGAAAGCTCAGGCCAACTGGTATAGAAAAATTCTACAAGCATGGAAGGAAGCCAAGCCCCCACCAAAAACCCCAGAGGAAACATCAAGGCTCATCATTGCAACCTTGAAAAACCACCAGAAGGCAGATGTGGAGGGCTTACTTGCCTTCTATGGCTTGCCTCTTCCTCATTCATTAGTCGAACTGTCAACTGGAGTGCCGTCCGCGCACCCTGATGGGGTGAAGTACGAGCTCCATACTTTACCGGTGGATGCAAAGGCAGTAGCAGATGGAGATACCATAACTGTATATGTAAGTACTGCAGACCCTCGAGAGTCTTCTTCAGTTCCTAAAGAAGTGCACACTGCGGCAATCCAACGGTCAAAGGCACGTGCCGAGAGAGATTATCCCAAGGCAGATGCCCTTCATAAGAAAATAATCGATCAGAATTACAGGGTTATTCCTATTCAAAATGATGAAGTTCTAGCCAAAAAGTATCGGATTCGATTAAGGGGAATAGATGCACCTGAGAGTGCAATGCCATTCGGGAAGCAGGCGAAAGAGGAGCTGACTAATCTTGTACAAGGAAAGAGCTTAAGGGTTCTCGTCTATGGAGAAGACCGTTATAGTCGCTATGTAGGGGACATCTACTGCAACGGCATATTTGCACAGGAAGTGATGCTGAAGAAAGGATTAGCATGGCACTACGCAGCCTACGACCGCCGTGCAGAACTAGCAAATTGGGAAAAGGAGGCACGGGCTAAGAGGGTAGGGCTATGGGCTTCAAAAAATGCAGAGGAGCCATGGGAATGGAGAAAAAACAAACGTGAAGGAAGATAA MGNALRFLYKNCIHPTTTDSQSYGPHGVSAQNAGVSALAKDLLHFEATSQVPEGLTKHVVSSKKAQANWYRKILQAWKEAKPPPKTPEETSRLIIATLKNHQKADVEGLLAFYGLPLPHSLVELSTGVPSAHPDGVKYELHTLPVDAKAVADGDTITVYVSTADPRESSSVPKEVHTAAIQRSKARAERDYPKADALHKKIIDQNYRVIPIQNDEVLAKKYRIRLRGIDAPESAMPFGKQAKEELTNLVQGKSLRVLVYGEDRYSRYVGDIYCNGIFAQEVMLKKGLAWHYAAYDRRAELANWEKEARAKRVGLWASKNAEEPWEWRKNKREGR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00360.1 vs. NCBI nr
Match: gi|902221533|gb|KNA18940.1| (hypothetical protein SOVF_066140 [Spinacia oleracea]) HSP 1 Score: 672.5 bits (1734), Expect = 3.700e-190 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
BLAST of Spo00360.1 vs. NCBI nr
Match: gi|731316410|ref|XP_010695420.1| (PREDICTED: staphylococcal-like nuclease CAN2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 591.7 bits (1524), Expect = 8.300e-166 Identity = 287/334 (85.93%), Postives = 309/334 (92.51%), Query Frame = 1
BLAST of Spo00360.1 vs. NCBI nr
Match: gi|731362475|ref|XP_010692905.1| (PREDICTED: staphylococcal-like nuclease CAN2 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 548.5 bits (1412), Expect = 8.000e-153 Identity = 271/334 (81.14%), Postives = 290/334 (86.83%), Query Frame = 1
BLAST of Spo00360.1 vs. NCBI nr
Match: gi|224098748|ref|XP_002311254.1| (Ca(2+)-dependent nuclease family protein [Populus trichocarpa]) HSP 1 Score: 539.7 bits (1389), Expect = 3.700e-150 Identity = 262/335 (78.21%), Postives = 295/335 (88.06%), Query Frame = 1
BLAST of Spo00360.1 vs. NCBI nr
Match: gi|255559589|ref|XP_002520814.1| (PREDICTED: staphylococcal-like nuclease CAN2 [Ricinus communis]) HSP 1 Score: 536.6 bits (1381), Expect = 3.200e-149 Identity = 261/335 (77.91%), Postives = 295/335 (88.06%), Query Frame = 1
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHI6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066140 PE=4 SV=1) HSP 1 Score: 672.5 bits (1734), Expect = 2.600e-190 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3U9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g029580 PE=4 SV=1) HSP 1 Score: 591.7 bits (1524), Expect = 5.800e-166 Identity = 287/334 (85.93%), Postives = 309/334 (92.51%), Query Frame = 1
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044460 PE=4 SV=1) HSP 1 Score: 548.5 bits (1412), Expect = 5.600e-153 Identity = 271/334 (81.14%), Postives = 290/334 (86.83%), Query Frame = 1
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Match: B9HHW7_POPTR (Ca(2+)-dependent nuclease family protein OS=Populus trichocarpa GN=POPTR_0008s07470g PE=4 SV=1) HSP 1 Score: 539.7 bits (1389), Expect = 2.600e-150 Identity = 262/335 (78.21%), Postives = 295/335 (88.06%), Query Frame = 1
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Match: B9S495_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688330 PE=4 SV=1) HSP 1 Score: 536.6 bits (1381), Expect = 2.200e-149 Identity = 261/335 (77.91%), Postives = 295/335 (88.06%), Query Frame = 1
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Match: CAN2_ARATH (Staphylococcal-like nuclease CAN2 OS=Arabidopsis thaliana GN=CAN2 PE=1 SV=1) HSP 1 Score: 473.4 bits (1217), Expect = 2.100e-132 Identity = 232/331 (70.09%), Postives = 273/331 (82.48%), Query Frame = 1
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Match: CAN1_ARATH (Staphylococcal-like nuclease CAN1 OS=Arabidopsis thaliana GN=CAN1 PE=1 SV=1) HSP 1 Score: 457.2 bits (1175), Expect = 1.500e-127 Identity = 228/333 (68.47%), Postives = 271/333 (81.38%), Query Frame = 1
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Match: Y38K_CAPSE (Uncharacterized 38.1 kDa protein OS=Capnoides sempervirens PE=2 SV=1) HSP 1 Score: 445.3 bits (1144), Expect = 6.000e-124 Identity = 227/339 (66.96%), Postives = 265/339 (78.17%), Query Frame = 1
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Match: CAN1_ORYSJ (Probable staphylococcal-like nuclease CAN1 OS=Oryza sativa subsp. japonica GN=Os01g0166100 PE=2 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 3.200e-117 Identity = 213/339 (62.83%), Postives = 262/339 (77.29%), Query Frame = 1
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Match: CAN2_ORYSJ (Probable staphylococcal-like nuclease CAN2 OS=Oryza sativa subsp. japonica GN=Os11g0109500 PE=2 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 4.800e-97 Identity = 171/320 (53.44%), Postives = 224/320 (70.00%), Query Frame = 1
BLAST of Spo00360.1 vs. TAIR (Arabidopsis)
Match: AT2G40410.2 (Staphylococcal nuclease homologue) HSP 1 Score: 473.4 bits (1217), Expect = 1.200e-133 Identity = 232/331 (70.09%), Postives = 273/331 (82.48%), Query Frame = 1
BLAST of Spo00360.1 vs. TAIR (Arabidopsis)
Match: AT3G56170.1 (Ca-2+ dependent nuclease) HSP 1 Score: 457.2 bits (1175), Expect = 8.600e-129 Identity = 228/333 (68.47%), Postives = 271/333 (81.38%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00360.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00360.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00360.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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