Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGTTGTACTACAAGTGTGATCCTTAAAACAATCTGAGATGGTGCAAGGGAGTAGTTGAGCAAGAAAACAAGGGGCAACAACACGAAGGATATTGCGGGGGAAGCTTAGACGAAGGAGAAAGTATTGAAAACAGGCGAAACATTAAGATGCAAGAAGAATTGAAGCAAATGAAGAAGAAGCTAAAACAACAACAAAAAGTAGTCAAAGTTTTAATACAAATGAGGATATTGATATTTGTAATTTTACTGTATTGTAATCATGAAGTAATGAGAAACATCAAAATAGCTATATTTAAGTTTAGGGCATTTGGTGAAATAAGTTTCAGAATAGGGGCATTTGGTGAAATAAGTTTCAGAATAGGGGCATTTGGGTGAATTGGAAACTTGACTAACGGCGGACTAACGACCCGTTATTAGTAAGGGTATGTTGGGTATTTGTACGAATTGTGAGGAGTATTTTATGAATTATTGAAACTTGATGGGCGTTTGGTGAATTATGGCAAAATTCGATGGCATTTCATGAAATTTCTGATTTTTTTTTAATATGAGAAACGTTTTCATAATCATAGATAGTACTCGTTATTGTTTCAAAGTTGACAATATCTAATATTTCACCCGTCTTTTAATACTCGCAACGTTTGGACTTTTTGCACTATTCATATAATTTACTTTGACTATTCTTGGTGTTTTTTATATAAGATAAAACATAGTCATGTGAGATCTTGTTAAATTCGTCTCAATGTGTATTTTCAAAATATCAACTTTTTACAATTTTTGCATAAAGAGAATTTAAGATATAAATGATCAAAGTTGTGCATTGGCATGCGTGAATGTAACAAAAGTTGCGAGTATTAAAAAACGGAGGAAGTATGACTGAGAGAAACATGGATACTCCGTATAAACCAACCTAAATTTAGCCCGATTTGACAAATTTGACAATCAACAACAAATTTACGCTTTTATAAATCTTTAACAAAGTAATAATTTTTTAATAAGTGAAACATTTTCATATATATATATATATATATATATATATATATATATATAGTACTCGTTCTTGTTTCAAAGTTGACAATCTCTAATATGACTATTTTAGAAACATGGACATAAACCAACCTAAATTCAGCCCGATTTGATAAACTTTTCTTAAATACAATTTCTATTATTATACTTGCACGGTATCGTTTTTTACATATTTAACGAACAAATCGAAAACGTCATGAAACCAAACACGGACACGAACGCAAACACAACCCGAATAATAATATCCGGAATAGGCTCCACAAGACCACAATCCTCAGTCAGGGTGAAAAAAATAAGTAGCAGGCCAAGATACTAACACTATGGAAAGAGAAGCAGAAGCCCAAAACGTTTTTTAAAAAAGCCTAGGTTTTATTGAAAGTCCACTATTTGCTAAGAATTTAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTTTTTCTCTCTTCTTTCCCCTTTTCCTCTGCTTCTTCATGTTTCGAATTGATTTAATGTTAACATATGTTATTCACACCATGTTTTTAGATTCTTAAATTCGCAATTTTGATTTTGAATCTACACTTGTGTCTGGTTTTTGTATTAATTGATTTAATGGTGCATTGAAAATTCATTAAAGCTCAGACAAAAAGTTCGTTTTTCCGATTTTTCTGAGCGATAATTTAAGAAATCGGTTGAGACTGTTGCCGTGAAAGGTTAAAAAATTCAGAATATTATTTGGGTTTTTAATTATGTTGACGATTATTAATCTAAATTTGTAAGATTTAGAAAACAAACTTGGATAGAAGTGTTTGACTCCAGTTTTTGTTGCATCATATTGCTAGTGAATTCGAAAATGCAGAATATGATTTGTGGTTTTTGTTTTAATTGGTGATTATCGTATTTGTGGGGTTTATGATATAATGTTAGATTGTCATGGAATTTTAAAGCACTAAACTTTGTATCATGCTGATATTGAATTGTTTGGTATATTGGACAAGATATTAGAGTTAATTTCATTTGATAAATACGAATTTACTCCACATATATTCACGCTTTTAAGCTCTGTTAAATAAATTCTATGGTCTCTTTTGGTTTGAATAATCACTATTAGCCTGGAATTACTAATCATTGCCGCTTGTTAGTAGGTAGTATTCTATGATTTCTGTGTAGTTCTTAATGGTTAGATATACTTGGTTTAATCCATCTAGCACGTTTAAGGACTCACCTGTTTGCTTGCTGAACTCTTTAACACTCTTATTAATAGCAGTAGTAATTGTATATAGTCACTCTTGTTCCAAGTGATCACTTCAAAACTAAGTATTGCATGAGTCTTATATTTGATTGTTTATGAAGTAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATGTTGCTAATTTTTGCTTCTGCTTCTTTTAGTACATAGTCCATATTCAATTGGATAACTAACATATTATTTATGGGTTTGTTTCAGTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGTATAGATTATTGGTGTTCACTGTAATTTACTTTGTTTACTTGCTTCCGTGATTGGTAGCCTTACAAAAGATTTTCGGTTGTTTTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAAGGACTTCACAGTTAGCCTCCTTAGGTAGCGAGGGAAAGTTTTAATGCCTGATGTTTTGCATTAAAAAAGATTGGAAAACTCAATTTTGTGTTAATTTTTACTCCTTTGAAGTTAGAGTTTTTTGTTGAACTGGATTGTGGTTACGTGTATGTGGCTACACATTATGAATTTCATGGTTCCTCTGTTTATCTAACTACTTTTGCAGTCTCTACTCCAGATCTTGTTTTCTTTAGTAAAGCCTTCGGATTCGTTGTCATAATCTGGTTTTTAAGATGTACTCTGAATATAAATCTTAGCAATAATCTGCTAGCAGAAAATTGAAAAAAATAATTGCTGCTAGAATCAGAGTATTTTAACG ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAAGGACTTCACAGTTAGCCTCCTTAGGTAGCGAGGGAAAGTTTTAATGCCTGATGTTTTGCATTAAAAAAGATTGGAAAACTCAATTTTGTGTTAATTTTTACTCCTTTGAAGTTAGAGTTTTTTGTTGAACTGGATTGTGGTTACGTGTATGTGGCTACACATTATGAATTTCATGGTTCCTCTGTTTATCTAACTACTTTTGCAGTCTCTACTCCAGATCTTGTTTTCTTTAGTAAAGCCTTCGGATTCGTTGTCATAATCTGGTTTTTAAGATGTACTCTGAATATAAATCTTAGCAATAATCTGCTAGCAGAAAATTGAAAAAAATAATTGCTGCTAGAATCAGAGTATTTTAACG ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAA MSPHILEYLPNFVIVVGNLSFEALIQHSIHKGFISPLYFFPFPFVFIILAPSLLCFYSQVFALLCDHLKTKQRCRTTREKLSIFTSPGSGNTFVYISATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKVQSGQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|902197432|gb|KNA13425.1| (hypothetical protein SOVF_117070 [Spinacia oleracea]) HSP 1 Score: 131.3 bits (329), Expect = 1.500e-27 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|460366748|ref|XP_004229241.1| (PREDICTED: 40S ribosomal protein S21-2 [Solanum lycopersicum]) HSP 1 Score: 115.9 bits (289), Expect = 6.400e-23 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|565351711|ref|XP_006342798.1| (PREDICTED: 40S ribosomal protein S21-2 [Solanum tuberosum]) HSP 1 Score: 115.5 bits (288), Expect = 8.300e-23 Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|661897166|emb|CDO98878.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 115.5 bits (288), Expect = 8.300e-23 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|747086882|ref|XP_011090961.1| (PREDICTED: 40S ribosomal protein S21-like [Sesamum indicum]) HSP 1 Score: 115.2 bits (287), Expect = 1.100e-22 Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R916_SPIOL (40S ribosomal protein S21 OS=Spinacia oleracea GN=SOVF_093210 PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.000e-27 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: K4AWT4_SOLLC (40S ribosomal protein S21 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 4.400e-23 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GU27_SOLCH (40S ribosomal protein S21 OS=Solanum chacoense PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23 Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: M1AST6_SOLTU (40S ribosomal protein S21 OS=Solanum tuberosum GN=PGSC0003DMG400011319 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23 Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A068TU50_COFCA (40S ribosomal protein S21 OS=Coffea canephora GN=GSCOC_T00025830001 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2) HSP 1 Score: 107.5 bits (267), Expect = 1.400e-22 Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.400e-22 Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 6.600e-20 Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 6.600e-20 Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.200e-14 Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1
BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Match: AT5G27700.1 (Ribosomal protein S21e ) HSP 1 Score: 107.5 bits (267), Expect = 8.000e-24 Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1
BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Match: AT3G53890.1 (Ribosomal protein S21e ) HSP 1 Score: 106.7 bits (265), Expect = 1.400e-23 Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00363.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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