Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATGAAAGAACCACCCTAATTTAAAGGCAAGTCCGAAAAGCAGGAATAAGATGACCTTTACCTAAAGTTGATTTATACTACTTTACTATTATCATCCCCAGAAAAAAGAAGAATCTAATGCCTTCATGGTTATGTTTAAATGCAGGTATATATGTGCCTTAACAAATGCAGAAACATAAGCAATTTCTAGTTTTTCCTACATTTCTCGCTCTTTCTTAGAGTTACAGACTTTCATATTACAATCCCATCAGAAAAAATTATGACAAATGTAAGTATTCATTTCGTACAATTTCTATGTGAATTCAGCATCATTTTTAAACATAACCTTTTCGGCGTCATCCATTAACAGGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGGTAAAGAACACACAACCTGTAATATTAGTCAAATATTACATGTTCTGTTCTTTTTAGGAAATCTGTTATTTCATTAATTATGTTGATGTTGATTTTGTTTCTTGATTTCTTGGCTAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGATCTTATTTCTGCAATTTCTGGAGTTATCTGAAATTTTCGTCCTACATCTCATAGCATATGAAGATTTATATAGTAATATCGTTGTATACAGTATAAGCAGTTGATTTTAGAATGTAGCTACATTGTTTTCAACCTGTAATTCAACACACTTCTCTCTGTTGATGTTCAACATTTTGATGCAGTTTTATCTTCCTGCTGTTCATTTCTTGCTGCTCATGTATTTCTTACAGAATTCTTTCAACTTTAAGCTAATTGGGTTAAGTAAATGTCTAAAATATAT TATGAAAGAACCACCCTAATTTAAAGGCAAGTCCGAAAAGCAGGAATAAGATGACCTTTACCTAAAGTTGATTTATACTACTTTACTATTATCATCCCCAGAAAAAAGAAGAATCTAATGCCTTCATGGTTATGTTTAAATGCAGGTATATATGTGCCTTAACAAATGCAGAAACATAAGCAATTTCTAGTTTTTCCTACATTTCTCGCTCTTTCTTAGAGTTACAGACTTTCATATTACAATCCCATCAGAAAAAATTATGACAAATGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGATCTTATTTCTGCAATTTCTGGAGTTATCTGAAATTTTCGTCCTACATCTCATAGCATATGAAGATTTATATAGTAATATCGTTGTATACAGTATAAGCAGTTGATTTTAGAATGTAGCTACATTGTTTTCAACCTGTAATTCAACACACTTCTCTCTGTTGATGTTCAACATTTTGATGCAGTTTTATCTTCCTGCTGTTCATTTCTTGCTGCTCATGTATTTCTTACAGAATTCTTTCAACTTTAAGCTAATTGGGTTAAGTAAATGTCTAAAATATAT ATGACAAATGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGA MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGKTATTWDDRQQSNSVASGYM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|902221532|gb|KNA18939.1| (hypothetical protein SOVF_066130 [Spinacia oleracea]) HSP 1 Score: 162.2 bits (409), Expect = 3.900e-37 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|731362466|ref|XP_010692900.1| (PREDICTED: copper transport protein ATX1 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 142.9 bits (359), Expect = 2.500e-31 Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|731362468|ref|XP_010692901.1| (PREDICTED: copper transport protein ATX1 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 137.1 bits (344), Expect = 1.400e-29 Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|1009121533|ref|XP_015877508.1| (PREDICTED: copper transport protein ATX1 [Ziziphus jujuba]) HSP 1 Score: 129.0 bits (323), Expect = 3.700e-27 Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|566191590|ref|XP_006378648.1| (hypothetical protein POPTR_0010s19000g [Populus trichocarpa]) HSP 1 Score: 127.9 bits (320), Expect = 8.200e-27 Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJ29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066130 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 2.700e-37 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHG2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044470 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.700e-31 Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: U5FZ85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19000g PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 5.700e-27 Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: M1C7P7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023960 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 9.100e-25 Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RKE7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G072400 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.200e-24 Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1
BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Match: CCH_ARATH (Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.200e-7 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Match: ATOX1_ARATH (Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 3.600e-6 Identity = 21/68 (30.88%), Postives = 42/68 (61.76%), Query Frame = 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 112.8 bits (281), Expect = 9.600e-26 Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 5.700e-10 Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 2.800e-9 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 3.700e-9 Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT3G56240.1 (copper chaperone) HSP 1 Score: 55.1 bits (131), Expect = 2.400e-8 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00383.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2 Position : 0 Zoom : x 1
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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