Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGACTAGTAAAGTTCCATAGACCATAGGTTTCCAAATTTGATTTTAGCATCCTTTTGTTTATGTTGGATGAACCTGTCCCTTATATGGGCTAAAAGGTCACCCACCGCCTTAACTTTGGCTTTCCATCTTCCCCAAAGTCTACTGCTGCGGCTGCTTGGCTGGCTGCCCTTTGCCACCACCACCAACATACATGAACCATTACACCATTTTTTCACCATTCTCATCATTCCTCATAAAACCCCATTCAATCGTTATTGTACAACACCATTGTTGAAAGCTACCCTTTTCAATGGCTTCTCTAAATCATCTTCATTCATTATCAATTCAAACTTCCACCGCATTTCATACCAATCTGCAAAAACCCAAAACTTTTCACACCCAAATCTGCGTTAATTATAGGCAAATTGTATGTTGTTCAACTTCTTCACCCTTCACTGAGAAGAATTCGGTGGAGCGATACCAAAGGGAGCACTGGGTTTATCCTGTTATATCTCAATTTCAATCATCTCAATCTCAAGAACACTGTCAATCGTCTTCGCCGCCGCAGCCGTCTAAGGATAGAAGGGAAGATGACATTGCTTCCCAACTACCAGAACTCAAGAAGCTGCTTGAGGTATTGAGAGAAAAGAGAGAGAGCCAATCACAAGGTGGCGGCAATTCTGGTGTTATTGGAAATGTGTATTTGGTGGGCACTGGTCCAGGGGACCCTGAGTTACTCACTGTAAAAGCTCTCAAAATAATTCAATCTGCTGATCTTCTATTGTACGATCGCCTCGTCTCGAATGATGTGTTGGAAATGGTGGGCCCCAATGCTAAGCTTCTGTATGTTGGGAAGACTGCTGGCTACCATAGTAGGACACAGGAGGAGATTCATCAGCTGCTGTTGAGTTTTGCTGAAGCTGGTGCTAATGTTGTTAGACTTAAAGGCGGAGATCCTCTTGTAAGTAATGTTTATGTGCTAACAATGACTATTTGTTTGTGTCTACGATTGAGTAAAGCATATCACTGTGGTTTATTTTGTGTGATGTTGTGCTAGATTTTCGGACGCGGTGGCGAAGAGATGGATTTCCTGCAGCAGAAGGGGATTCAAGTTAAAGTTGTTCCAGGTACTGCTCTATTAGTTGTTGTTGAATGTACTAACTACAAGTGTTGATCTTTAATTCTTTCGAATGTTACAAGAGCACATAATGACATACGTTAACTTAGTTAATTAATATTGCAGAAAGCATATAAACCTGTTTAGTTTTTATATCAAAGTATTGGAAGGAATAATGCGGGAAGAATTGTAGTATAAGTTGGAATCAGGTTTCTAACTGTGACAGATTAGTGTGCAAGAGGAGTAAAGGGTGAGTGTCTTGATCATTAGCTTTTACTTGCCTCCCTGTGTCTACCAATAGGTCAGGTTTTGTTAGTTTTTTTGCTGTGTTTAGCTGTAGGGTCGAATATGTTATCGGCCTGAACTTCAGGGTGCACTGTCAGAATAACTCTTTCCTTACTCTGCAATTATCTTTGACTTGAAGTGGAATTACTACTCATGAGAAAATGGTGGGTTTTGTACTTATTCTGCGAGCTTCTTGATGTTACCTTTATGTATAAATTAAACTACCTTTCCAGATATAATTGATGTTTCCTTTATGTACAACTATAATATGAAAGTACTTGTCGAGATATAATTTAAACTACCTTTGTGGACATTTAGTTTTCACATTACTAGTCTAATGAAAATGTCATACTTCAATGCATAAGCTCTCTGCTTTTATTTGTCATACTTCAATACACAAGCCTATTTTTATCAAACTTTGTATTGTGCTCGTCATTGAGTTGTACTATGTCGTGCTTCATAGGTATAACACAGTGATGCATTATGACTTTCTTGCAATAAACTAAAATTTCCATTTATCATTGCAATAAAACCACAGCAACCAAAGCATCTGTTATTCGTATAATCGTATGAAGCATAGAAATGTTTCTAGTAGTATCTAAGGATAACTCATCCATAGAGCAATCAATGTAGTACTATTTTATTTAATTTCCCATCAGGACCTGCTTCATTCTGCACATTTCTCTTGGAATGTATCTTTATTCATACTTCATATTTTATCGTGAACTAGAAAAAATAGTTGCTCAAAGCATCAATGTTTAGTAAACTCCACTTTCTAGGAAGGGCTAGAACACCAACCCTTCATATGCAACAACTAAATTACATAACAAGCAACTCATCTCATCAAAACTTCTACAGGCAACTTTAAACACAATAGACCTTAACAAATTTCTACTGTTAACAAGGCAATTGTTGAAGATCTTCTGGTTCCGTCAAAGCTAAATGTTGTAAACACATTGCAATTTATGATCTGGCTTTTTACTCATGCACCCTTTTGCGGCCCGAAGAACTTCTAATTGGAAGTCATCAATTGATCTATTGCACCTGAGCATATGCAAACATTTACTCCAAACATTTGTTGAAATAGTAGCAAGCAAAGAAAAGATGAGAAATGTTCTCATCAGCTTGTCCACACAGGACACAAGTACCATCTGTTGCCACATTCCACCTTTGAGTTCTGTCGTTAGGTAGTTAATAGTTAACTTATTAAGAATTGCAAGCCAAGTAATAAAGATACTCCTTGTACTGGACATAATATTGCACTAACTTGTATATACAAATAGTTATATAAAATCATAAGTGTCCCTTTAGATAATGTGATACGCAGTACTTGTATAAAGTCATTCTCAGTCTCTATAACAAAGAAAAAGTAGTTAGTTCTCAGTCGTTATATGTTATCATAAGGGTCCCTTTGGTTTCTCACCTGTTCTCCCTTTGCCACGCCCTATGAAAAAGTTGCTTTACTTTAATACTGACTAAATGCTGAAGCAAATATTATTTACCAGCTGAAATTTTCTTCCTTGTAAGGTATTACTGCTGCTTCAGGTATATCAGCTGAACTAGGAATTCCGTTGACTCATCGAGGCATCGCAACTAGTGTTAGATATCTCACTGGACACTCAAGGAATGGGGGAACTGATCCGTTGTATGTAGCAGAGAATGCTGCTGACCCTGACTGTACCCTAGTTGTATATATGGGTTTGGCAACACTTCCTGCTCTTGCCCAGAAATTGGTGCAACATGGCCTGCCTAATGATACTCCTGCTGTTGCAGTGGAAAGAGGGACAACTGCTCAACAGCGTTTGGTAAGGAATACCTAACCGTTCCTTGATTCAATTTTGTTTATAATTTTTATATACTGTCTGCATTGGCATTACATAATTTGAGGTGTAGATTGGTAGGGATTTTTATTTCAAGGCTTGAACACATTTGTTATCTTTCTATGATTTCTGCACCTCCTCCATTATAATCAGCAAGTCAATAAAAAAGAAAAGGGGTGTGATCTGATGTGGAAGAGTTGAGACAACCCATAGACTGTTACCTTTTCTTTTGATCTCAAACAACCGAGCTCTGATTAAAATTCAGAAAATTCCTCAGTCGAATACCATTACTTCTATTCTGAATTCGTCACTAAAGCTGCATAAAATTATCAGAAAGGAGCCAAGGCAAAGCGTTTGCAGACGGAGCAACACTCAGCAGATCTTCCCACATTTTCTTCCTGGTTTCAACTGTATGCAGGCATAAATTGCACCAAACAAAGAAAGCAAAATGTTCCCTTGATTGTCATAGAGCTTACATTGAGTAAACTGCTAATGGTCTTGAAGGACAGTACAATAACATTAACCTCTAAGTGATTGGGCCAAATTCTCCTCTTATGAGAATGGGAGTAAGCAGATCCATTTCCAATGCTGACCAAACTTGCACATAATTTTTGGACATGTTTCAAGTTTCAACTAGGGCTTTGGGATACATTTATAAGATCATATTTTGTTTCTAATGAAGGAATGCTGGAATTAGTGGAAATGCCAATCATGTATTCAATTGTATTATATATAGTACTCACTTTACCTCTGTCCTGGAATGAATTATCGGCTACCTTTTAGAGTAGGATCTGGATAGTCCCTTGCCTTTTATATTGAGTTTGTCTTGTCATAAAATAGTAATATGAGGTAAATTTGGGTAATGTGATTTCTATTCATACAACGAACTCAACTAGGGAGGCACATTTTAGATTACTGTGTGACTAGATTCTCATTTGAACAGGTATTTTCAAAGTTGGAGAATCTTGCTGATAAAATTAGATGTAGTGGACTGGTATCCCCTACACTGATCATCATCGGGAAGGTTGTTGCACTTTCCCCATTGTGGATGCAATCCTGTGAAGAACCAGCTGAGCTTGTGGATGCAAAGTAG AGACTAGTAAAGTTCCATAGACCATAGGTTTCCAAATTTGATTTTAGCATCCTTTTGTTTATGTTGGATGAACCTGTCCCTTATATGGGCTAAAAGGTCACCCACCGCCTTAACTTTGGCTTTCCATCTTCCCCAAAGTCTACTGCTGCGGCTGCTTGGCTGGCTGCCCTTTGCCACCACCACCAACATACATGAACCATTACACCATTTTTTCACCATTCTCATCATTCCTCATAAAACCCCATTCAATCGTTATTGTACAACACCATTGTTGAAAGCTACCCTTTTCAATGGCTTCTCTAAATCATCTTCATTCATTATCAATTCAAACTTCCACCGCATTTCATACCAATCTGCAAAAACCCAAAACTTTTCACACCCAAATCTGCGTTAATTATAGGCAAATTGTATGTTGTTCAACTTCTTCACCCTTCACTGAGAAGAATTCGGTGGAGCGATACCAAAGGGAGCACTGGGTTTATCCTGTTATATCTCAATTTCAATCATCTCAATCTCAAGAACACTGTCAATCGTCTTCGCCGCCGCAGCCGTCTAAGGATAGAAGGGAAGATGACATTGCTTCCCAACTACCAGAACTCAAGAAGCTGCTTGAGGTATTGAGAGAAAAGAGAGAGAGCCAATCACAAGGTGGCGGCAATTCTGGTGTTATTGGAAATGTGTATTTGGTGGGCACTGGTCCAGGGGACCCTGAGTTACTCACTGTAAAAGCTCTCAAAATAATTCAATCTGCTGATCTTCTATTGTACGATCGCCTCGTCTCGAATGATGTGTTGGAAATGGTGGGCCCCAATGCTAAGCTTCTGTATGTTGGGAAGACTGCTGGCTACCATAGTAGGACACAGGAGGAGATTCATCAGCTGCTGTTGAGTTTTGCTGAAGCTGGTGCTAATGTTGTTAGACTTAAAGGCGGAGATCCTCTTATTTTCGGACGCGGTGGCGAAGAGATGGATTTCCTGCAGCAGAAGGGGATTCAAGTTAAAGTTGTTCCAGGTATTACTGCTGCTTCAGGTATATCAGCTGAACTAGGAATTCCGTTGACTCATCGAGGCATCGCAACTAGTGTTAGATATCTCACTGGACACTCAAGGAATGGGGGAACTGATCCGTTGTATGTAGCAGAGAATGCTGCTGACCCTGACTGTACCCTAGTTGTATATATGGGTTTGGCAACACTTCCTGCTCTTGCCCAGAAATTGGTGCAACATGGCCTGCCTAATGATACTCCTGCTGTTGCAGTGGAAAGAGGGACAACTGCTCAACAGCGTTTGAAAGGAGCCAAGGCAAAGCGTTTGCAGACGGAGCAACACTCAGCAGATCTTCCCACATTTTCTTCCTGGTTTCAACTGTATGCAGGCATAAATTGCACCAAACAAAGAAAGCAAAATGTTCCCTTGATTGTCATAGAGCTTACATTGAGTAAACTGCTAATGGTATTTTCAAAGTTGGAGAATCTTGCTGATAAAATTAGATGTAGTGGACTGGTATCCCCTACACTGATCATCATCGGGAAGGTTGTTGCACTTTCCCCATTGTGGATGCAATCCTGTGAAGAACCAGCTGAGCTTGTGGATGCAAAGTAG ATGGCTTCTCTAAATCATCTTCATTCATTATCAATTCAAACTTCCACCGCATTTCATACCAATCTGCAAAAACCCAAAACTTTTCACACCCAAATCTGCGTTAATTATAGGCAAATTGTATGTTGTTCAACTTCTTCACCCTTCACTGAGAAGAATTCGGTGGAGCGATACCAAAGGGAGCACTGGGTTTATCCTGTTATATCTCAATTTCAATCATCTCAATCTCAAGAACACTGTCAATCGTCTTCGCCGCCGCAGCCGTCTAAGGATAGAAGGGAAGATGACATTGCTTCCCAACTACCAGAACTCAAGAAGCTGCTTGAGGTATTGAGAGAAAAGAGAGAGAGCCAATCACAAGGTGGCGGCAATTCTGGTGTTATTGGAAATGTGTATTTGGTGGGCACTGGTCCAGGGGACCCTGAGTTACTCACTGTAAAAGCTCTCAAAATAATTCAATCTGCTGATCTTCTATTGTACGATCGCCTCGTCTCGAATGATGTGTTGGAAATGGTGGGCCCCAATGCTAAGCTTCTGTATGTTGGGAAGACTGCTGGCTACCATAGTAGGACACAGGAGGAGATTCATCAGCTGCTGTTGAGTTTTGCTGAAGCTGGTGCTAATGTTGTTAGACTTAAAGGCGGAGATCCTCTTATTTTCGGACGCGGTGGCGAAGAGATGGATTTCCTGCAGCAGAAGGGGATTCAAGTTAAAGTTGTTCCAGGTATTACTGCTGCTTCAGGTATATCAGCTGAACTAGGAATTCCGTTGACTCATCGAGGCATCGCAACTAGTGTTAGATATCTCACTGGACACTCAAGGAATGGGGGAACTGATCCGTTGTATGTAGCAGAGAATGCTGCTGACCCTGACTGTACCCTAGTTGTATATATGGGTTTGGCAACACTTCCTGCTCTTGCCCAGAAATTGGTGCAACATGGCCTGCCTAATGATACTCCTGCTGTTGCAGTGGAAAGAGGGACAACTGCTCAACAGCGTTTGAAAGGAGCCAAGGCAAAGCGTTTGCAGACGGAGCAACACTCAGCAGATCTTCCCACATTTTCTTCCTGGTTTCAACTGTATGCAGGCATAAATTGCACCAAACAAAGAAAGCAAAATGTTCCCTTGATTGTCATAGAGCTTACATTGAGTAAACTGCTAATGGTATTTTCAAAGTTGGAGAATCTTGCTGATAAAATTAGATGTAGTGGACTGGTATCCCCTACACTGATCATCATCGGGAAGGTTGTTGCACTTTCCCCATTGTGGATGCAATCCTGTGAAGAACCAGCTGAGCTTGTGGATGCAAAGTAG MASLNHLHSLSIQTSTAFHTNLQKPKTFHTQICVNYRQIVCCSTSSPFTEKNSVERYQREHWVYPVISQFQSSQSQEHCQSSSPPQPSKDRREDDIASQLPELKKLLEVLREKRESQSQGGGNSGVIGNVYLVGTGPGDPELLTVKALKIIQSADLLLYDRLVSNDVLEMVGPNAKLLYVGKTAGYHSRTQEEIHQLLLSFAEAGANVVRLKGGDPLIFGRGGEEMDFLQQKGIQVKVVPGITAASGISAELGIPLTHRGIATSVRYLTGHSRNGGTDPLYVAENAADPDCTLVVYMGLATLPALAQKLVQHGLPNDTPAVAVERGTTAQQRLKGAKAKRLQTEQHSADLPTFSSWFQLYAGINCTKQRKQNVPLIVIELTLSKLLMVFSKLENLADKIRCSGLVSPTLIIIGKVVALSPLWMQSCEEPAELVDAK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00478.1 vs. NCBI nr
Match: gi|902207872|gb|KNA15795.1| (hypothetical protein SOVF_094870 [Spinacia oleracea]) HSP 1 Score: 656.4 bits (1692), Expect = 3.600e-185 Identity = 335/341 (98.24%), Postives = 337/341 (98.83%), Query Frame = 1
BLAST of Spo00478.1 vs. NCBI nr
Match: gi|731376080|ref|XP_010667452.1| (PREDICTED: uroporphyrinogen-III C-methyltransferase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 510.4 bits (1313), Expect = 3.200e-141 Identity = 274/348 (78.74%), Postives = 299/348 (85.92%), Query Frame = 1
BLAST of Spo00478.1 vs. NCBI nr
Match: gi|970003229|ref|XP_015062390.1| (PREDICTED: siroheme synthase [Solanum pennellii]) HSP 1 Score: 438.3 bits (1126), Expect = 1.500e-119 Identity = 242/358 (67.60%), Postives = 284/358 (79.33%), Query Frame = 1
BLAST of Spo00478.1 vs. NCBI nr
Match: gi|460367465|ref|XP_004229594.1| (PREDICTED: uroporphyrinogen-III C-methyltransferase [Solanum lycopersicum]) HSP 1 Score: 438.3 bits (1126), Expect = 1.500e-119 Identity = 242/358 (67.60%), Postives = 284/358 (79.33%), Query Frame = 1
BLAST of Spo00478.1 vs. NCBI nr
Match: gi|697144117|ref|XP_009626179.1| (PREDICTED: uroporphyrinogen-III C-methyltransferase [Nicotiana tomentosiformis]) HSP 1 Score: 437.6 bits (1124), Expect = 2.600e-119 Identity = 238/354 (67.23%), Postives = 282/354 (79.66%), Query Frame = 1
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8H8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_094870 PE=3 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 2.500e-185 Identity = 335/341 (98.24%), Postives = 337/341 (98.83%), Query Frame = 1
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B653_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_008870 PE=3 SV=1) HSP 1 Score: 510.4 bits (1313), Expect = 2.200e-141 Identity = 274/348 (78.74%), Postives = 299/348 (85.92%), Query Frame = 1
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Match: K4AY58_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 1.100e-119 Identity = 242/358 (67.60%), Postives = 284/358 (79.33%), Query Frame = 1
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Match: W8SGE9_TOBAC (Siroheme synthase OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 2.400e-119 Identity = 236/345 (68.41%), Postives = 279/345 (80.87%), Query Frame = 1
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Match: M4E9T5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 2.400e-119 Identity = 238/350 (68.00%), Postives = 279/350 (79.71%), Query Frame = 1
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Match: CYSG_PSEA7 (Siroheme synthase OS=Pseudomonas aeruginosa (strain PA7) GN=cysG PE=3 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 2.400e-56 Identity = 120/240 (50.00%), Postives = 157/240 (65.42%), Query Frame = 1
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Match: CYSG_PSEAB (Siroheme synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysG PE=3 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 2.400e-56 Identity = 119/240 (49.58%), Postives = 158/240 (65.83%), Query Frame = 1
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Match: CYSG_PSEAE (Siroheme synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cysG PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 7.000e-56 Identity = 119/240 (49.58%), Postives = 156/240 (65.00%), Query Frame = 1
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Match: CYSG_PSEA8 (Siroheme synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysG PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 7.000e-56 Identity = 119/240 (49.58%), Postives = 156/240 (65.00%), Query Frame = 1
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Match: CYSG_PSEU2 (Siroheme synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=cysG PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 7.000e-56 Identity = 118/227 (51.98%), Postives = 155/227 (68.28%), Query Frame = 1
BLAST of Spo00478.1 vs. TAIR (Arabidopsis)
Match: AT5G40850.1 (urophorphyrin methylase 1) HSP 1 Score: 430.6 bits (1106), Expect = 1.100e-120 Identity = 235/343 (68.51%), Postives = 273/343 (79.59%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00478.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00478.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00478.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00478.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|