Spo00539 (gene) | SpinachBase

Overview


Name	Spo00539
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(BnaA07g14140D protein) (BnaA07g14160D protein)
Location	chr1 : 31491322 .. 31495250 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATCTGATAAAATTGAAACAATAGGAAGGTAATCATCAAAGACCAGAGCCAAGGACCTGTTCTAACCTCAAAAGAAATCGGTGCAAATCCGAAATGCCCAAAATTGTACACTCTCTCTCCTACTCATCAATGAATTCCACCCTCAAATTCCATTCAATTCCCAAAATTCATCCTCCATTTTCAATAGATTCCACATGCTTAGTGACTAATTCTGTAAAATTGCCCACTGCTAAAACGAAGAACAAATTCCGACAAATAATTAATTGTTGTTCAGAAAACCAAAGTAGAACCCTAAGAACTTGCAAAAGTTGCAAAACCCAGTTCGATCCAGCTCTCAATCACCCTCTTGCTTGCCGATTTCACACTGCTCATTTTGGAGGTACCCTTTAAATTACACCATTTCCAGGATTTTAATTTTGTTTTTATGCTCTTTTTTCTCGTTTTCTGGTTTTGTTTAATTAGTAATAAACTACTTGAATTAATTGCTGTTTTGGTGAATTTGATGTATTAGATTAAGACATGTGCTCCCTTTGTTAATATCCGACTTGGATACATGAGGTGTAATAGAATTGGAATTGTCAATTTTGGTGTCTATATTTGTGGAAATAGTTGGATGATCAACGAGGGAACTTGACAGATAACAGACTGACAGTAGGATGGAGTATTGGAGATGCAAACTATATACACTTAGTAATTTACGTATGTACGTTTGCCGCGGCCACGAATCCACGATGTATAGTGATCATGTCGTTTTTTTGGAGGAAATTGTTGGGTTTGCTTAAGAAATGTACCTTTGTTGCTTATGAAAACAACATACTTAATACTTCGTAACCATATTAACAATGTAAATGCTCATTCTTTAAGAGTCAAATTTTGTTTTTGAATAATTTGCTACTCAATCTGTAATAAACTCACAATTCTACCACAAATTCGACAGTAATATGAGGGAGGGATGAATGATTTGATTAATGGAAGTGGAACTTACAAAAGGGGCTCAAACATAAACAAGCAACTTCTTGTGTATGTTACCGTTATCGGAGGACGCTGCCAAGTCATTACATAATTAGAGCCTCCACCATACACTAAGATGACCTAGTCACCTAGGAGTACCTAGACTATTTCTTGCTCGTCTGCAGTACTCCAATGAGTATGTAATGGAGAGAAGATAGGGATGACACGATTATTATAGATGGGATATATTAGTCCAAGCACATCATCTTAATATGACGTATATAGGGGACGAGGCAATATGACTATGATTTCCAAACTGATGGAATATATTTTGCATAAGGATGTTCCTTCAAAAGTACTTCAGAACTCTGTTAAATATCGTACTTAAGGGTTGACATGACTCTTTACTCTTTAGTATGAGCTTATAACAGTCTCCAACAGTCAACATTGGAACTTCTTTGTAGCTTCACATCAGAGGTACCTTTCATGGTTCAGTGTTGTTATTGGAGAATCTGTCGCTGATTGTCTGAACATAACTAGTGAGCTTACAGCCAAGTCTTAATTGTTTTTATTGGTTGAAAATAGCTTCCCTTTTTCTCTCTTCTGATGTGGAGGTGGTATTGGACTAGACACCATGTGGTTAAGTTGGGTTGTATCATTTTAAACCATTGGACTTTGCCTCCAGTTGTATTTTGCATAGTGCTTATGATCCTTTTTTTGTGGCGTAGCTTTTGTTGGTGATATGTTGGGCTTTGCTAAAAATGTGTCCCCTAACCTAGCCGGAGAGCCATTTCTCCGATTTTTTTTGATAGATTGTTTTAAAATATAGATCTATGGATTATATGTGTAGTTCTTTAATCAGGTGCTTATCAAGAAGATATGGACTTGAGAGAAAGTGTTTACATTGAAACTCTGAGATTCAATTCAATAGATTTCTATGGCAGCAAACATGGTCTCTTGCTGCTGACTGCCTGCTGGTCTGTTCATAATACTCCCATCCCCATATTGGTGCTCCACTCCCCTCAGCAAGAAATTACCATGGGCATCGCACATTCTGTCAGTGCTTCAAATAGACTTCTCCATTTTACCTGTCTGATCTAGAATCCATCTGTGACTTAACTGGCATCATGCTGCTAAAAGCTAATCCGAACTCACCTTTTCGTTTACTGGCTGTAGGATAGATTTTGTCAACGATTTGCTTCTCGCAAAATTCTGTATGCATGTAGACGTTATGCTGCTTATAGCTAACCCAACCCAGTCTTTTCGTTTACCATGTGTAGGATAGATTTGTCAATGATGTGATCAGGCTTTTCTCTGTCTCTTCTTTGATTCTCGCAAAATTCTGTATGCATGTAGACATCATGCTGCTTACAGCTAATCCAAACCAAACTTTTCGTTTACTATCTGTAGGATAGATTTTTTCAATATTGTGAACAGGGTTTTCTCTGTCTCTCTTTTTTGCTTCTCACAAAGTTCTGTATGCATTGTATACTAAAGGCCGAAGGTTAATTTAGGATTTAACGAAGGGTTAAAGTAACATTAAATATTTATCTGGGTCTGTTTATGTGTAAGTCTCATTTTGGATTGTTTAGTATTCTTTGCTTGTTTTTCCTGCTTCTTGATCCTTATTTGGTTCTCATCACCTTAAGCAGGAGAGACAAAGAGGAAGTTTGAGAGTGTCTACACAGGAGGTACGATGAACACCCCCAATTCTGGTCAAGTTTTACAGTACTGGCATTGTTGTGGATCGGAAGACCCATTTGACCCTGGATGCACCTCAGCCCCACACTCATCTTACGATGATTGACAGTGCTGCCATTTGCAAATAAGGTCATCACTGTTTTAAGCTATTGGTTTTTGTAAAGAAGTCGGGAAAGATAATATTATTGCAGTTTCTTGTAGCATTGAATTGTCACCATTCAATTCGAACATATGGAATCCCTGATTCTTATGCAACTATGCAATTGCATAAAAGAATGAAGAGATTGATGGACAAAATGTATGGCATTTGTAAAAATGTCCTTGTCCTTGTCCTTGTCCCTGTCACTGGAGCAGCTGTCTTGTTTGCAAGTCTGTTTTTACTGAGGTTGTTGTATGTATTAATTTGTTAGTTTCAGTAACAATCTGTAGTCCAAATCTATAGCTCAACAGGAAATGAAGATGGTTGGCAAGCATGATGAAAACTGTGGTGCAAGCTATTCTGATTTTCTTGATCAAAGTAGGGAATGTAACAGATATCAGAAATTGGAAGGGTATTTGGATCTTTGACAAGGACAGCAACGTTTACCATGAGCAGGTGAAGGTAACAACTGTTATTGATTCCGAGTCTGCAATTGGGAAGTTGACATTATTCTAGAGTTTTTCCAGTTGGAGAGATAGCTAGTGAACTCATCCAAGCAATGCCCATCAGTGAAAGGTTCCCTGCCGATAGTCGATAGTCGATAGATATAGGGGCAGGGGTGCTGATTTTGTGGAGGCTGGAAGAAAATTGAATCCTACTCTTTCCCTCCCTTTGTCTCTCTACAAATTCCAATCCAGTTTTCTTAAAATACGGAGTAATTAAATGTTTTTTCTTTGCTTTACTTGGCACTTGCTACACGCCCAAGTACAGCGTACCAAAGCTATCAATGTTGATTTTTTTGATACGAAACTACTTTATGTCTTAAAAATGTAACTATGTAGAATAATTTGAATGATATAGAGGAAGTAGTTTAATTATTGTATGACAATTGGTTGTTGCCTCGTTTAGTTGACTTTTAACTAAACAACGCCTATATCAATTGTCAACTGCTCCAGTCGTCCCTCTTGTTTGGCCCCTTGGAAAAACCGTGGGACTTATGTTAAGGAAAGAGTCAGATGTGAAGTACGGCTTATATCTTAAAGAAACAAAATACAATTGTATCAGGAAAAGGCTACATATACACCTAGTGTACAAGATTCTCATGTACATCACCATTAATTTATTAACACATCAT

mRNA sequence

ATTCATCTGATAAAATTGAAACAATAGGAAGGTAATCATCAAAGACCAGAGCCAAGGACCTGTTCTAACCTCAAAAGAAATCGGTGCAAATCCGAAATGCCCAAAATTGTACACTCTCTCTCCTACTCATCAATGAATTCCACCCTCAAATTCCATTCAATTCCCAAAATTCATCCTCCATTTTCAATAGATTCCACATGCTTAGTGACTAATTCTGTAAAATTGCCCACTGCTAAAACGAAGAACAAATTCCGACAAATAATTAATTGTTGTTCAGAAAACCAAAGTAGAACCCTAAGAACTTGCAAAAGTTGCAAAACCCAGTTCGATCCAGCTCTCAATCACCCTCTTGCTTGCCGATTTCACACTGCTCATTTTGGAGGAGAGACAAAGAGGAAGTTTGAGAGTGTCTACACAGGAGGTACGATGAACACCCCCAATTCTGGTCAAGTTTTACAGTACTGGCATTGTTGTGGATCGGAAGACCCATTTGACCCTGGATGCACCTCAGCCCCACACTCATCTTACGATGATTGACAGTGCTGCCATTTGCAAATAAGGTCATCACTGTTTTAAGCTATTGGTTTTTGTAAAGAAGTCGGGAAAGATAATATTATTGCAGTTTCTTGTAGCATTGAATTGTCACCATTCAATTCGAACATATGGAATCCCTGATTCTTATGCAACTATGCAATTGCATAAAAGAATGAAGAGATTGATGGACAAAATGTATGGCATTTGTAAAAATGTCCTTGTCCTTGTCCTTGTCCCTGTCACTGGAGCAGCTGTCTTGTTTGCAAGTCTGTTTTTACTGAGGTTGTTGTATGTATTAATTTGTTAGTTTCAGTAACAATCTGTAGTCCAAATCTATAGCTCAACAGGAAATGAAGATGGTTGGCAAGCATGATGAAAACTGTGGTGCAAGCTATTCTGATTTTCTTGATCAAAGTAGGGAATGTAACAGATATCAGAAATTGGAAGGGTATTTGGATCTTTGACAAGGACAGCAACGTTTACCATGAGCAGGTGAAGGTAACAACTGTTATTGATTCCGAGTCTGCAATTGGGAAGTTGACATTATTCTAGAGTTTTTCCAGTTGGAGAGATAGCTAGTGAACTCATCCAAGCAATGCCCATCAGTGAAAGGTTCCCTGCCGATAGTCGATAGTCGATAGATATAGGGGCAGGGGTGCTGATTTTGTGGAGGCTGGAAGAAAATTGAATCCTACTCTTTCCCTCCCTTTGTCTCTCTACAAATTCCAATCCAGTTTTCTTAAAATACGGAGTAATTAAATGTTTTTTCTTTGCTTTACTTGGCACTTGCTACACGCCCAAGTACAGCGTACCAAAGCTATCAATGTTGATTTTTTTGATACGAAACTACTTTATGTCTTAAAAATGTAACTATGTAGAATAATTTGAATGATATAGAGGAAGTAGTTTAATTATTGTATGACAATTGGTTGTTGCCTCGTTTAGTTGACTTTTAACTAAACAACGCCTATATCAATTGTCAACTGCTCCAGTCGTCCCTCTTGTTTGGCCCCTTGGAAAAACCGTGGGACTTATGTTAAGGAAAGAGTCAGATGTGAAGTACGGCTTATATCTTAAAGAAACAAAATACAATTGTATCAGGAAAAGGCTACATATACACCTAGTGTACAAGATTCTCATGTACATCACCATTAATTTATTAACACATCAT

Coding sequence (CDS)

ATGCCCAAAATTGTACACTCTCTCTCCTACTCATCAATGAATTCCACCCTCAAATTCCATTCAATTCCCAAAATTCATCCTCCATTTTCAATAGATTCCACATGCTTAGTGACTAATTCTGTAAAATTGCCCACTGCTAAAACGAAGAACAAATTCCGACAAATAATTAATTGTTGTTCAGAAAACCAAAGTAGAACCCTAAGAACTTGCAAAAGTTGCAAAACCCAGTTCGATCCAGCTCTCAATCACCCTCTTGCTTGCCGATTTCACACTGCTCATTTTGGAGGAGAGACAAAGAGGAAGTTTGAGAGTGTCTACACAGGAGGTACGATGAACACCCCCAATTCTGGTCAAGTTTTACAGTACTGGCATTGTTGTGGATCGGAAGACCCATTTGACCCTGGATGCACCTCAGCCCCACACTCATCTTACGATGATTGA

Protein sequence

MPKIVHSLSYSSMNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPFDPGCTSAPHSSYDD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00539.1	Spo00539.1	mRNA

Homology

[Close]

BLAST of Spo00539.1 vs. NCBI nr
Match: gi|902223777|gb|KNA19574.1| (hypothetical protein SOVF_060320 [Spinacia oleracea])

HSP 1 Score: 292.0 bits (746), Expect = 5.900e-76
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1

		  
Query: 13  MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS 72
           MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS
Sbjct: 1   MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS 60

Query: 73  CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF 132
           CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF
Sbjct: 61  CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF 120

Query: 133 DPGCTSAPHSSYDD 147
           DPGCTSAPHSSYDD
Sbjct: 121 DPGCTSAPHSSYDD 134

[Close]

BLAST of Spo00539.1 vs. NCBI nr
Match: gi|731315960|ref|XP_010693646.1| (PREDICTED: uncharacterized protein LOC104906572 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 248.4 bits (633), Expect = 7.500e-63
Identity = 120/148 (81.08%), Postives = 129/148 (87.16%), Query Frame = 1

		  
Query: 1   MPKIVHSLSYSSMNSTLKFHSIPKIHPPF-SIDSTCLVTNSVKLPTAKTKNKFRQIINCC 60
           M   +HSLSYS+M STL+FHS PKIH  F ++DS CL+TNS+KLPT  T   F Q INCC
Sbjct: 1   MASTLHSLSYSTMLSTLEFHSSPKIHSLFPTVDSACLLTNSLKLPTKNTNKNFPQ-INCC 60

Query: 61  SENQSR-TLRTCKSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQ 120
           SENQSR TLRTCK CKTQFDPALNHPLACRFHTAHFGGETKRKFESV+TGGTMNTPNSGQ
Sbjct: 61  SENQSRITLRTCKFCKTQFDPALNHPLACRFHTAHFGGETKRKFESVHTGGTMNTPNSGQ 120

Query: 121 VLQYWHCCGSEDPFDPGCTSAPHSSYDD 147
           VL+YWHCCGSED FDPGCTSAPHSSYDD
Sbjct: 121 VLEYWHCCGSEDQFDPGCTSAPHSSYDD 147

[Close]

BLAST of Spo00539.1 vs. NCBI nr
Match: gi|870867750|gb|KMT18619.1| (hypothetical protein BVRB_2g027490 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 235.0 bits (598), Expect = 8.600e-59
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 1

		  
Query: 13  MNSTLKFHSIPKIHPPF-SIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSR-TLRTC 72
           M STL+FHS PKIH  F ++DS CL+TNS+KLPT  T   F Q INCCSENQSR TLRTC
Sbjct: 1   MLSTLEFHSSPKIHSLFPTVDSACLLTNSLKLPTKNTNKNFPQ-INCCSENQSRITLRTC 60

Query: 73  KSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSED 132
           K CKTQFDPALNHPLACRFHTAHFGGETKRKFESV+TGGTMNTPNSGQVL+YWHCCGSED
Sbjct: 61  KFCKTQFDPALNHPLACRFHTAHFGGETKRKFESVHTGGTMNTPNSGQVLEYWHCCGSED 120

Query: 133 PFDPGCTSAPHSSYDD 147
            FDPGCTSAPHSSYDD
Sbjct: 121 QFDPGCTSAPHSSYDD 135

[Close]

BLAST of Spo00539.1 vs. NCBI nr
Match: gi|743821144|ref|XP_011021338.1| (PREDICTED: uncharacterized protein LOC105123443 [Populus euphratica])

HSP 1 Score: 188.0 bits (476), Expect = 1.200e-44
Identity = 93/136 (68.38%), Postives = 105/136 (77.21%), Query Frame = 1

		  
Query: 13  MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQS--RTLRTC 72
           M  TL  +S+P    PF   +T     S + PT +++   R  I  CS NQ+  RTLRTC
Sbjct: 1   MAFTLHHYSLP--FSPFLHQNTTFSLQSYQKPTIESQ---RLSITHCSINQNSNRTLRTC 60

Query: 73  KSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSED 132
           K+CKTQFDP+LNHP ACRFHTAHFGGETKRKFESVYTGGTMNTP+SGQV QYWHCCGSED
Sbjct: 61  KNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVYTGGTMNTPDSGQVFQYWHCCGSED 120

Query: 133 PFDPGCTSAPHSSYDD 147
           PFDPGCT+APHSSYDD
Sbjct: 121 PFDPGCTAAPHSSYDD 131

[Close]

BLAST of Spo00539.1 vs. NCBI nr
Match: gi|225453094|ref|XP_002271418.1| (PREDICTED: uncharacterized protein LOC100248486 [Vitis vinifera])

HSP 1 Score: 182.6 bits (462), Expect = 5.100e-43
Identity = 83/108 (76.85%), Postives = 90/108 (83.33%), Query Frame = 1

		  
Query: 39  NSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKSCKTQFDPALNHPLACRFHTAHFGGET 98
           NSV+LP  +           CS N ++TL+TCK CKTQFDP LNHP ACRFHTAHFGGET
Sbjct: 29  NSVQLPAIR-----------CSLNSNQTLKTCKICKTQFDPLLNHPRACRFHTAHFGGET 88

Query: 99  KRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPFDPGCTSAPHSSYDD 147
           KRKFESVYTGGTMNTP+SGQVLQYWHCCGSEDPFDPGCT+APHSSYDD
Sbjct: 89  KRKFESVYTGGTMNTPDSGQVLQYWHCCGSEDPFDPGCTAAPHSSYDD 125

[Close]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060320 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.100e-76
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1

		  
Query: 13  MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS 72
           MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS
Sbjct: 1   MNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKS 60

Query: 73  CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF 132
           CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF
Sbjct: 61  CKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPF 120

Query: 133 DPGCTSAPHSSYDD 147
           DPGCTSAPHSSYDD
Sbjct: 121 DPGCTSAPHSSYDD 134

[Close]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2U3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027490 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.000e-59
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 1

		  
Query: 13  MNSTLKFHSIPKIHPPF-SIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQSR-TLRTC 72
           M STL+FHS PKIH  F ++DS CL+TNS+KLPT  T   F Q INCCSENQSR TLRTC
Sbjct: 1   MLSTLEFHSSPKIHSLFPTVDSACLLTNSLKLPTKNTNKNFPQ-INCCSENQSRITLRTC 60

Query: 73  KSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSED 132
           K CKTQFDPALNHPLACRFHTAHFGGETKRKFESV+TGGTMNTPNSGQVL+YWHCCGSED
Sbjct: 61  KFCKTQFDPALNHPLACRFHTAHFGGETKRKFESVHTGGTMNTPNSGQVLEYWHCCGSED 120

Query: 133 PFDPGCTSAPHSSYDD 147
            FDPGCTSAPHSSYDD
Sbjct: 121 QFDPGCTSAPHSSYDD 135

[Close]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Match: D7TSU7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01900 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.500e-43
Identity = 83/108 (76.85%), Postives = 90/108 (83.33%), Query Frame = 1

		  
Query: 39  NSVKLPTAKTKNKFRQIINCCSENQSRTLRTCKSCKTQFDPALNHPLACRFHTAHFGGET 98
           NSV+LP  +           CS N ++TL+TCK CKTQFDP LNHP ACRFHTAHFGGET
Sbjct: 29  NSVQLPAIR-----------CSLNSNQTLKTCKICKTQFDPLLNHPRACRFHTAHFGGET 88

Query: 99  KRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPFDPGCTSAPHSSYDD 147
           KRKFESVYTGGTMNTP+SGQVLQYWHCCGSEDPFDPGCT+APHSSYDD
Sbjct: 89  KRKFESVYTGGTMNTPDSGQVLQYWHCCGSEDPFDPGCTAAPHSSYDD 125

[Close]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Match: B9T320_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0326850 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.000e-43
Identity = 92/142 (64.79%), Postives = 103/142 (72.54%), Query Frame = 1

		  
Query: 5   VHSLSYSSMNSTLKFHSIPKIHPPFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSENQS 64
           V SLS  S N++  FH       P +I     +T S KLP          II C  +N  
Sbjct: 10  VTSLSTFSQNAS--FHRQFHYQRPIAIRIP--ITGSPKLP----------IIQCSIDNSK 69

Query: 65  RTLRTCKSCKTQFDPALNHPLACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWH 124
            TLRTCK+CKTQFDP+LNHPLACRFHTAHFGGETKRKFESVY+GGTM+TP+SG V QYWH
Sbjct: 70  NTLRTCKNCKTQFDPSLNHPLACRFHTAHFGGETKRKFESVYSGGTMDTPDSGIVFQYWH 129

Query: 125 CCGSEDPFDPGCTSAPHSSYDD 147
           CCGSEDPFDPGCT+APHSSYDD
Sbjct: 130 CCGSEDPFDPGCTAAPHSSYDD 137

[Close]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Match: V7B422_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G009900g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.300e-42
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 1

		  
Query: 28  PFSIDSTCLVTNSVKLPTAKTKNKFRQIINCCSE-NQSRTL--RTCKSCKTQFDPALNHP 87
           PF++ S C+++++  + T  +       I CCS  NQ  ++  RTCK+CKTQFDP+LNHP
Sbjct: 17  PFTVQSQCIISSNPNIFTYPS-------IRCCSSLNQKSSISHRTCKNCKTQFDPSLNHP 76

Query: 88  LACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPFDPGCTSAPHSSY 147
           LACRFHTAHFGGETKRKFESVY GGTMNTP+SG+V QYWHCCGSEDPFDPGCTS+PH+SY
Sbjct: 77  LACRFHTAHFGGETKRKFESVYEGGTMNTPDSGKVFQYWHCCGSEDPFDPGCTSSPHTSY 131

[Close]

BLAST of Spo00539.1 vs. TAIR (Arabidopsis)
Match: AT5G38060.1 (unknown protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.700e-44
Identity = 84/122 (68.85%), Postives = 100/122 (81.97%), Query Frame = 1

		  
Query: 29  FSIDSTCLVTNSVKLPTAKT-KNKFRQIINCCSENQS---RTLRTCKSCKTQFDPALNHP 88
           FSI  T + ++S+K  T KT K   RQ  + C+ + S   +TLRTCK+CKTQFDP LN+P
Sbjct: 15  FSIPKTLIHSHSLK--TLKTPKLNSRQFFSQCTASSSDGPKTLRTCKNCKTQFDPLLNNP 74

Query: 89  LACRFHTAHFGGETKRKFESVYTGGTMNTPNSGQVLQYWHCCGSEDPFDPGCTSAPHSSY 147
            ACRFHTAHFGGETKRKFESVYTGGTM+TPNSG+VLQYWHCCGSEDPFD GCT++PH++Y
Sbjct: 75  RACRFHTAHFGGETKRKFESVYTGGTMDTPNSGKVLQYWHCCGSEDPFDSGCTASPHTTY 134

[Close]

BLAST of Spo00539.1 vs. TAIR (Arabidopsis)
Match: AT1G65000.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.500e-8
Identity = 27/83 (32.53%), Postives = 41/83 (49.40%), Query Frame = 1

		  
Query: 68  RTCKSCKTQFDPALNHPLACRFHTAHF----GGETKRKFESVYTGGTMNTPNSGQVLQYW 127
           + C+ CK  +    N   +CRFH + F      + KR +E       +   +     +++
Sbjct: 8   KLCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYE-------LKPDDPPYAAKFY 67

Query: 128 HCCGSEDPFDPGCTSAPHSSYDD 147
            CCG+EDP  PGC + PH SYDD
Sbjct: 68  DCCGAEDPNAPGCVTNPHISYDD 83

The following BLAST results are available for this feature:

BLAST of Spo00539.1 vs. NCBI nr
BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
BLAST of Spo00539.1 vs. ExPASy Swiss-Prot
BLAST of Spo00539.1 vs. TAIR (Arabidopsis)

BLAST of Spo00539.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902223777\|gb\|KNA19574.1\|	5.9e-76	100.	hypothetical protein SOVF_0603...	[more]
gi\|731315960\|ref\|XP_010693646.1\|	7.5e-63	81.0	PREDICTED: uncharacterized pro...	[more]
gi\|870867750\|gb\|KMT18619.1\|	8.6e-59	83.0	hypothetical protein BVRB_2g02...	[more]
gi\|743821144\|ref\|XP_011021338.1\|	1.2e-44	68.3	PREDICTED: uncharacterized pro...	[more]
gi\|225453094\|ref\|XP_002271418.1\|	5.1e-43	76.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo00539.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RKW6_SPIOL	4.1e-76	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D2U3_BETVU	6.0e-59	83.0	Uncharacterized protein OS=Bet...	[more]
D7TSU7_VITVI	3.5e-43	76.8	Putative uncharacterized prote...	[more]
B9T320_RICCO	6.0e-43	64.7	Putative uncharacterized prote...	[more]
V7B422_PHAVU	1.3e-42	67.2	Uncharacterized protein OS=Pha...	[more]

BLAST of Spo00539.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

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Match Name	E-value	Identity	Description

BLAST of Spo00539.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

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Match Name	E-value	Identity	Description
AT5G38060.1	3.7e-44	68.8	unknown protein	[more]
AT1G65000.1	2.5e-8	32.5	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106	FAMILY NOT NAMED	coord: 11..146 score: 6.7
None	No IPR available	PANTHER	PTHR35106:SF2	EXPRESSED PROTEIN	coord: 11..146 score: 6.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo12682	0.75	Barchart \| Table
Spo11688	0.74	Barchart \| Table
Spo25196	0.73	Barchart \| Table
Spo04123	0.70	Barchart \| Table
Spo09384	0.70	Barchart \| Table
Spo02232	0.70	Barchart \| Table
Spo26975	0.69	Barchart \| Table
Spo06170	0.69	Barchart \| Table
Spo25008	0.69	Barchart \| Table
Spo10835	0.68	Barchart \| Table
Spo04200	0.68	Barchart \| Table
Spo00743	0.68	Barchart \| Table
Spo06278	0.68	Barchart \| Table
Spo13981	0.68	Barchart \| Table
Spo02396	0.67	Barchart \| Table
Spo08407	0.67	Barchart \| Table
Spo00943	0.67	Barchart \| Table
Spo19288	0.67	Barchart \| Table
Spo00214	0.67	Barchart \| Table
Spo03139	0.67	Barchart \| Table
Spo08097	0.66	Barchart \| Table
Spo00872	0.66	Barchart \| Table
Spo06637	0.66	Barchart \| Table
Spo23526	0.66	Barchart \| Table
Spo24016	0.66	Barchart \| Table
Spo09428	0.66	Barchart \| Table
Spo05125	0.66	Barchart \| Table
Spo25717	0.66	Barchart \| Table
Spo18184	0.65	Barchart \| Table
Spo09625	0.65	Barchart \| Table
Spo21808	0.65	Barchart \| Table
Spo01252	0.65	Barchart \| Table