Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGACTATGTGACTCACTGTAGTCACTGTAGTCGTGTTCCCTTGCTCGCTGGAACGAGGTTACTTCTCTGGATCAATTGTCAACTTCTTTTGTTACTTTCTGTGCAGCAACCAGCAACGAAGCTAGAAAATGGGTCAATCTCAAAGTGATTCGTCCGCGTCCACCATTGATGAGACCCCAAAGGAGAACTCAAATGCCCCACCTTCTTCCTTGGAATCTCTAATTGCAGGTCTGTTTCCTCCAAATTTTTTTGGGTTTCGTTTAATTTTCCATCTGCTTCTTTATTAGAAATTGAATTGCACTTCTCTGCAAAATTATCCTCCTTACTTTATTGATTTTCTGTTAAAGGTAACACTTAACTTGAGAAGGGGACAGTAAATTCATTCTGGGGATTTTAGTTGATAATAATAATTTGGAATCGGTTTTGGCTGATAAATTTTAATCCCTTTTCCGCAGTTAATAATGAGGTTGAAGATTGATCAGAGTTCAGATTATTTTTTGAGAAAAAATGTGACATGGTTTTTGCCGGAAATTATGAGCTAGAAGAACAATTTCTTTAATTGGGTATCATCAAATTCACAAATTTCACTTAAATTCCAAATATCTGAAATTTAGTGTTTCAAATTTTACAGTAAATTTTATGCAATTTAGAGACGAGTACTTCACAGAAAATACATGTGGATTATGAACACTTTCTAATGAGTACTGTATAAGTATAACATAACATTTCAACAACTTTTAGTTTTATTACTTTGTACTCCAGTTCTTATTTTAAACTGAAGTCTCCCTAAGTTAGCACCAAGTTTAGGATGTCAATTTAAGCTTCCATAGGATGCTTTCTTGAAGGTTGTAAGTTTGGGTCATGGAATGAAGCGAAAGTATGGGGTATGGATGTATTGTAGATGAGAATAGGCTTTGGTTTTACTTTTTGTGTTATTATTTTTGTCAAATGATTGAAACTGTCTGCAATGTTCTTGGAATCTTAAAGAGTTAAAGAAATGGTTTCTGGTTGGTCACTTGGTAGAAAGTCTAAAAACCTTGTAGGCTTTGAACCTCTTGAAATGTTGACTGTCGTTTTTCCTTAAATAGAAATATGACACACGACTGTCTTTGATTTCTGCTATCATTGACTATAGGCTTCATTCTATGCTGATCTAGACGAGGGCTGGCTTTTTAGTAAGCTTGTTTCCGCAGAACTTGGTCATGGGTCGTGGAGGGATGAATCATATTCTTTCTCGAGGTTATCTTGTAAATTTTTCCTCCATTCAGTCGTGTATGTTGGTTGCCTCTGCACTGACCGAGAATGCAAAGCACTTTGATTCAAAATATAGTGTCGCTGACTGATTTAGGGTTTCAAAAGGGGAGGCCCAAGTTATAGATGTTGCTTTAAGAACTCCAATTCTCCCCCTTATTAGCAGCCAAAGATGGCCTCTCTAGGCCCTGTTCCCACACTTCATCAAAGTGTTTTCGCCCTTTCCACACTTGTCAATTTAGCAGGCTTGCTATGATCTGGTTATATATACTATACCATCATTATCATTACCCCATTGCCTCAAAGAGGCTCCCGCAAGAAGCGGGGTAAGGAGGGGTCGGGTGTACGCAACCTTACCCCTGCAATCGCAGAAAGGTTTCCAATTGACCCAAAATAGATGACGGGACGACAACGGGAAGACCATCTTCTACTTCATGGAAAGGAAGTGAAGAGGTTTTAAGAGCCATTTTGATTTAGTCCATTACATCCCACAGCCAAAAGAACAAATGAATCTTTGGCTCCGTCGGAAATGGACAAATTTGGTTACTATGATAAAATAAAATAAAAACCTGTTTTAAATACTAGTATACATGTAAAAAGAAGAATTGGACCAGAAAATATTGGCATAGGGAAGGTTGTGTAGATAGCTATCCTTTGTAAATGGTTTCTAGATTGAAAGATTACTTTGGCACTTAGGCTACAAACCCATTGGAAGGCATGTGCTTGACTTGCTTGGGTGTATGGTTGCATAGGGAAGCCTGGTTGTACTGAATGCGTAACCGAATAATGACAGGAGTTGGGAATTACAACAATTTCTCGATTAGAAAAATAAAGACAGCGACAATGATTTTCACTTGTTATATGAAATTGATTATTCTAGGATTTCTATCTATGATTTTTGCATGTTGTTTTCAGTGAGAATATGATTCCTATTTGAACCTTATACAATTTCCTTTTTGGCATTGCAGAGGCAGCAGCATACGGTGATAGCGAGAATGAGGTCATTAAGCTCTACTGTTGAACAGTTGAAGTATCTTCTTTGTTATATATTCAAGAAAGTTTTTCTCCTTGTATTATTTTGTTCTTTCCTAAATGAGTTGTGTGTTCTTTTCAGTCTATTGATGCAAAAGCTAGAAAAGCGTTGGAATGCCCATGTATAGCTGACTTGCGAGAAGGCTCATGTGGGAGTCAATTCTCAGAGGCCTTCCTCTGTTTTCTTAAGAGCACTGCTGAAGAAAAGGTGAGTGCACATAACAGACAACAATTATAGTTTCTCCATAAACAGCTTTTAACATATACTTCCTCCGTTTGAAAATAGATTCTACATAGAGAAGTGGTACATTATCTAAGAAAGTTAGAAAGATTGTAACGAGCCACATTTTGGCATATCAATTCCACCTTTAACCCCCCAAATTTGGTCCCCACCTTTTAGTATGAGGGCATGTTTTAGTTTAAGGTACCTTTCCAAAACTAATACTTCGTATGTGGGAATCATTGTGACAGCTCTGTATATGGGAAGTGTAGCAATTATTATGAAACAAAGGAAGTTTGCACCCAAAAAAATTATGAAAAAGAGGAAGTAATACGTTTGAATAGCATATGCAGTGATGCATGTATTGGTTTTATTTGTGAAATCTAATTTAGTTCAAGTGATAACTTTCAACTCTTAAATGGAAACGTTTGATTAATTTTTTCGAGAATAATGGTATGATAATTTATTTGGATATAATAGACTTAATCAAAATGGCTCTCAAAACCTCTTCGCTTCTTTTCCATGAAGTAGAAGATGGTCGTCCCGTTATTGTTTATGGGTAAATTAGAAACAACTTCTTTGCTGCAATACAGGGTAAGGTTGCGTACGTCCGACCACCCCTTACCACGCTTGTAGCGGGAGCCTCTTTGAAGGCACTGTGGTAATGATAATGAATGGTATGATCATTTATTTTTATGGTACGTTGGAGGTGAGGCAAGGGTGGAGATGGTGTGAGGACGGGGAAGCAAATCATGTGTGATAAAACTCGAGAAGTTTTCATCCTTTGATATGTTTGTTCGCAAATTTGGTTTGGTTATGGATCTTTGGTTGAAATGGAATTCTCGATTTCACTTCATTTTGTTGAGTAACAGAGGTTATGTCTTTCGTTTATTCATGATATAATATTGGCTTTTGTTTGTCTGTTTTCAGGGCTCCGACTGTGTGCATCCGTTTGTGGCATTGCAAAGTTGTATAAAGGCCAATCCAAATGCATTTTCAAAGGATATTGTGGGAGATGATAAAGTCAAGGAAGAAGTGTCTTCTGCAAATTACAGAATACATCCACCAAAATGGTCTTTAGAATCCCAAAGTCCTAAACCTAAACTGTAAACCGTAGAGAAAATTATTCACCCCAAAATTTGCGCAAAACTTCCTTTGTCTATTGGCATGCATGTTTTATGAGTAGTAAAGAACAATCTAGCACCACGGCTTGTTGTATGCAGGTTGATTGCTCGAGGATAGAAATGAAAAGATAGCTGAAATGCTCTTTTGAGAACTGTGTAACAACGAATAATCTCATACAAAGCGTTGTGACACTTAATTTGCTTCGACTAGTTACGCTTTCTTGTACACAAAGTGAACTTACTTCACAGTAGTAAAAAAATAAGCATTTATAATATAATCTCTCTAATCGACCATGAGGAAGATTAATGTTCCAACTCACAAAGATGAACTGAAATGAAGAGAAGATAAAGCTGCTTCAATAAGCAGAAAATGTGTTGAAAATTGAAGTACCCCTCTG GGACTATGTGACTCACTGTAGTCACTGTAGTCGTGTTCCCTTGCTCGCTGGAACGAGGTTACTTCTCTGGATCAATTGTCAACTTCTTTTGTTACTTTCTGTGCAGCAACCAGCAACGAAGCTAGAAAATGGGTCAATCTCAAAGTGATTCGTCCGCGTCCACCATTGATGAGACCCCAAAGGAGAACTCAAATGCCCCACCTTCTTCCTTGGAATCTCTAATTGCAGAGGCAGCAGCATACGGTGATAGCGAGAATGAGTCTATTGATGCAAAAGCTAGAAAAGCGTTGGAATGCCCATGTATAGCTGACTTGCGAGAAGGCTCATGTGGGAGTCAATTCTCAGAGGCCTTCCTCTGTTTTCTTAAGAGCACTGCTGAAGAAAAGGGCTCCGACTGTGTGCATCCGTTTGTGGCATTGCAAAGTTGTATAAAGGCCAATCCAAATGCATTTTCAAAGGATATTGTGGGAGATGATAAAGTCAAGGAAGAAGTGTCTTCTGCAAATTACAGAATACATCCACCAAAATGGTCTTTAGAATCCCAAAGTCCTAAACCTAAACTGTAAACCGTAGAGAAAATTATTCACCCCAAAATTTGCGCAAAACTTCCTTTGTCTATTGGCATGCATGTTTTATGAGTAGTAAAGAACAATCTAGCACCACGGCTTGTTGTATGCAGGTTGATTGCTCGAGGATAGAAATGAAAAGATAGCTGAAATGCTCTTTTGAGAACTGTGTAACAACGAATAATCTCATACAAAGCGTTGTGACACTTAATTTGCTTCGACTAGTTACGCTTTCTTGTACACAAAGTGAACTTACTTCACAGTAGTAAAAAAATAAGCATTTATAATATAATCTCTCTAATCGACCATGAGGAAGATTAATGTTCCAACTCACAAAGATGAACTGAAATGAAGAGAAGATAAAGCTGCTTCAATAAGCAGAAAATGTGTTGAAAATTGAAGTACCCCTCTG ATGGGTCAATCTCAAAGTGATTCGTCCGCGTCCACCATTGATGAGACCCCAAAGGAGAACTCAAATGCCCCACCTTCTTCCTTGGAATCTCTAATTGCAGAGGCAGCAGCATACGGTGATAGCGAGAATGAGTCTATTGATGCAAAAGCTAGAAAAGCGTTGGAATGCCCATGTATAGCTGACTTGCGAGAAGGCTCATGTGGGAGTCAATTCTCAGAGGCCTTCCTCTGTTTTCTTAAGAGCACTGCTGAAGAAAAGGGCTCCGACTGTGTGCATCCGTTTGTGGCATTGCAAAGTTGTATAAAGGCCAATCCAAATGCATTTTCAAAGGATATTGTGGGAGATGATAAAGTCAAGGAAGAAGTGTCTTCTGCAAATTACAGAATACATCCACCAAAATGGTCTTTAGAATCCCAAAGTCCTAAACCTAAACTGTAA MGQSQSDSSASTIDETPKENSNAPPSSLESLIAEAAAYGDSENESIDAKARKALECPCIADLREGSCGSQFSEAFLCFLKSTAEEKGSDCVHPFVALQSCIKANPNAFSKDIVGDDKVKEEVSSANYRIHPPKWSLESQSPKPKL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00553.1 vs. NCBI nr
Match: gi|902208675|gb|KNA16007.1| (hypothetical protein SOVF_093080 [Spinacia oleracea]) HSP 1 Score: 285.8 bits (730), Expect = 4.200e-74 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Spo00553.1 vs. NCBI nr
Match: gi|731315988|ref|XP_010693769.1| (PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 244.2 bits (622), Expect = 1.400e-61 Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 1
BLAST of Spo00553.1 vs. NCBI nr
Match: gi|1012339261|gb|KYP50497.1| (hypothetical protein KK1_027749 [Cajanus cajan]) HSP 1 Score: 196.4 bits (498), Expect = 3.400e-47 Identity = 101/145 (69.66%), Postives = 117/145 (80.69%), Query Frame = 1
BLAST of Spo00553.1 vs. NCBI nr
Match: gi|568828719|ref|XP_006468687.1| (PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Citrus sinensis]) HSP 1 Score: 186.8 bits (473), Expect = 2.700e-44 Identity = 103/153 (67.32%), Postives = 121/153 (79.08%), Query Frame = 1
BLAST of Spo00553.1 vs. NCBI nr
Match: gi|703126391|ref|XP_010103569.1| (hypothetical protein L484_023064 [Morus notabilis]) HSP 1 Score: 186.8 bits (473), Expect = 2.700e-44 Identity = 101/160 (63.12%), Postives = 121/160 (75.62%), Query Frame = 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RB46_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093080 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 2.900e-74 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D370_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027620 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 9.800e-62 Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Match: A0A151S6V8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027749 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 2.300e-47 Identity = 101/145 (69.66%), Postives = 117/145 (80.69%), Query Frame = 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Match: W9RWY3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023064 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 1.900e-44 Identity = 101/160 (63.12%), Postives = 121/160 (75.62%), Query Frame = 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Match: A0A067GNM5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031983mg PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 1.900e-44 Identity = 103/153 (67.32%), Postives = 121/153 (79.08%), Query Frame = 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Match: MIA40_USTMA (Mitochondrial intermembrane space import and assembly protein 40 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MIA40 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 9.500e-10 Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Match: MIA40_SCHPO (Mitochondrial intermembrane space import and assembly protein 40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mia40 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.600e-9 Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Match: MIA40_ASHGO (Mitochondrial intermembrane space import and assembly protein 40 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MIA40 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.800e-9 Identity = 32/125 (25.60%), Postives = 59/125 (47.20%), Query Frame = 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Match: MIA40_YEAST (Mitochondrial intermembrane space import and assembly protein 40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIA40 PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 6.200e-9 Identity = 40/148 (27.03%), Postives = 62/148 (41.89%), Query Frame = 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Match: MIA40_KLULA (Mitochondrial intermembrane space import and assembly protein 40 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MIA40 PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 8.100e-9 Identity = 37/129 (28.68%), Postives = 62/129 (48.06%), Query Frame = 1
BLAST of Spo00553.1 vs. TAIR (Arabidopsis)
Match: AT5G23395.1 (Cox19-like CHCH family protein) HSP 1 Score: 168.3 bits (425), Expect = 3.500e-42 Identity = 91/151 (60.26%), Postives = 116/151 (76.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00553.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00553.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00553.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00553.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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