Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTACCCGGTAACAAGTTCATGGGCGAGAGCTCTGGTTCAGATCTCTCCTTACACCTTCTCGGCCCTCGGCATCGCCCTTTCCATTGGCATCTCCGTCCTCGGCGCCGCCTGGTATTTCTCCATATTGCAGGCCCTTTTTTTAGGATTTTATAAATTAATTGAATCTGATTTTTTGATTTTTTTTGTTGTTGCAGGGGAATTTATATTACTGGGAGTAGTTTGATTGGTGCGGCAATCAAAGCTCCTAGAATCACATCCAAAAATCTCATCAGGTAAATATGAAATACCTTAAATTTTGTAAATTTGACTACTGAATTTTTTTTTTAACAAATGTGTGCTGTTTTATTATTAATATGAGCATTATGTTCTGTTATGATAGAAACCTAGATTAGATGATGGAAAACTTTGATCTCGTACTGTATTATGTTAGAACCAAACTTGAAATAAGTATGTATAGTTGGTGTTAATTTACTTTGGTTGGAGGGGAGAGGGTAAAGAAAAAAAACAATTTGACTAGTTCAATCGTAATCGATCTCTTTTGCTAGTGAATCGCAATGCTGGATTTATGAAGAAGTTATTGTAATGTTTCGTATGTCGATAGTGTGACGGCGCTACCAAACTCTAGATTGTTAAGTTAGATGCATGAGTTGAGAAAATTTGTGTACAATTTCTTAGTCAGATTAAAAGTAACAGTTGAGTATGCTTTTCAGAAGCATGATTTTATCCATTGTTGGTGGGCTTGGCATGAATAGATGATGAGAGCTGTTTATTCGGAGTGTCGAAGAGAGCATAATATTGTTTTGAAGAGACAGTTGAAGAGGTATTAGAAAGAAATGGATTTGAAATTAAATTAGAAGATTACAGTTTCTATTGAAGTATTGAGTGTCTTAGGAGCACAAAGCTCAAAAGTGTAGGATTTTGCTCAACTTGGTGACAAGTATATTGGGAGAAATTGTAGTTTAAGATCACAAGTCGGAAGGTATTGTAATATTTGGTAAGGGGAGATTAAGAAGTATATTGAATTGACAGTTGTATATATTAGGTATCTACTTTGGGTCCTTGCACCATACAATTGTTTTGTTTTGAGAATCTCAACATTGCATGCTCGCTTATGGAACTTTAGTTAGTGACCTGCATAAGTTGGATTGAACTTAGGTACAACATAGGTATAGATTTAATCGAGTTGGGTCAAAGCTCTTTTAGTTGGTTTGCACATTAGGATTTAGGCTTGATGAAATTACCACTTCTTATTTGCCAGTACTTTTACTATGGTCTCCTTCAATTTTTTTTTTTTATTTTACTTCCTCTGAGGAACAATCACTGGATAAGCTGGTTTAACAGTTCTTATTTAGTTGTCACAATTTGACTTTAGCACTATACACTCTTTTGACCGGATTTTGCTATTTTTGCACAAGGTAAAATATAGTCCGGTGAAATCTTGTTTTTTTTCCCCTGATCAGTAGCAGTTTTTCCCTTGCAAATTCTCCTTTCAGACTTTTAAATTCTGTTTGCATGTAATGATCTGTATGTCTTAGCTGCTCAAATGTCCCAACTTTTTATGACTTCAAAGTTCAAATTAGGTTAAATTTGTTCACTACACCAAATTTCCCCAATCCCCCTCCCCACCCCATATAGTCCAAGGTACTAGTGGATTCATGGAATGGTCTAGTAGGATGCACTCAAAATATTTACTGTGAGAGAACAGTGCTATCGTTGTTTATATGGATGAAATAGCAAACATGTCAATGGCATGTGTTTGTATATATACAAAAAAAGAAGTTCTGTACGTAATATATCTATTTGCCGGCTGATTTTATATAACCAAAATTCTTTTTCTTCTCAGTGTAATCTTTTGTGAAGCTGTAGCTATTTATGGAGTAATTGTCGCTATCATTCTGCAGACAAAGCTAGAGAGTGTTCCTTCATCTCTTATTTACGAACCTGAGTCACTTAGAGCAGGATATGCAATCTTTGCATCTGGACTTATTGTCGGCTTTGCCAACCTTGTTTGTGGGTGAGTCTTATACTTCCCTTTACCTTGAATGAAACTTCTAGAAGTAGAGGTGGCCAAAACAGGTGGACTGGACTAGAACAGCTCTGTCGGAGTTTTAAACTATTCTCACCCACTTGGTGGACCGTCCAAGCGGCCATGAAGCTTGGCTGTGATGGGTCGGAACCAGCCCACTGGCCACCTGTATTATGAGGGTTGGTCTGTTTTGTTAATTTGATTGATAAGTCACTTATGACTCTGCAACAGGTTGTGTGTGGGTATAATTGGAAGCAGTTGTGCTTTATCTGATGCTCAAAACTCCACGCTGTTTGTGAAGATTTTGGTGATCGAGATTTTTGGAAGTGCCCTTGGGTTGTTCGGTGTGATTGTTGGCATCATTATGTCAGCCCAAGCAACATGGCCAAAGGCTGCATGATTTGCATTTTGCACAATCCATGAGAGAAATTCGTGTAAAATAGTGAACCTCACTCCATTTCCATGTTCAGTAGCGGGAATACAGGTCTTGTTGCGGAATTACTTTTATTCCCATTGTATATCTAAAACACCTTGTCGAAATTGAGATCATAATAGCAAATTGATGATGTATGATTGAGATCATTTTGCCTTTTTTGGTAGATTTATGTTGTTATTCTAATTCTTGAATAATGAGGGAGGAGCTCACCGCTTCGTTTCCTAAAACTCGTTTGTTCATCTTGTGAATTCTTTATTTATGTACACAAAATAAAAGTTTTGTTTCCAATCTTTATCAGGCCACACTTTTTCTATGAAT ATGGTGTACCCGGTAACAAGTTCATGGGCGAGAGCTCTGGTTCAGATCTCTCCTTACACCTTCTCGGCCCTCGGCATCGCCCTTTCCATTGGCATCTCCGTCCTCGGCGCCGCCTGGGGAATTTATATTACTGGGAGTAGTTTGATTGGTGCGGCAATCAAAGCTCCTAGAATCACATCCAAAAATCTCATCAGTGTAATCTTTTGTGAAGCTGTAGCTATTTATGGAGTAATTGTCGCTATCATTCTGCAGACAAAGCTAGAGAGTGTTCCTTCATCTCTTATTTACGAACCTGAGTCACTTAGAGCAGGATATGCAATCTTTGCATCTGGACTTATTGTCGGCTTTGCCAACCTTGTTTGTGGGTTGTGTGTGGGTATAATTGGAAGCAGTTGTGCTTTATCTGATGCTCAAAACTCCACGCTGTTTGTGAAGATTTTGGTGATCGAGATTTTTGGAAGTGCCCTTGGGTTGTTCGGTGTGATTGTTGGCATCATTATGTCAGCCCAAGCAACATGGCCAAAGGCTGCATGATTTGCATTTTGCACAATCCATGAGAGAAATTCGTGTAAAATAGTGAACCTCACTCCATTTCCATGTTCAGTAGCGGGAATACAGGTCTTGTTGCGGAATTACTTTTATTCCCATTGTATATCTAAAACACCTTGTCGAAATTGAGATCATAATAGCAAATTGATGATGTATGATTGAGATCATTTTGCCTTTTTTGGTAGATTTATGTTGTTATTCTAATTCTTGAATAATGAGGGAGGAGCTCACCGCTTCGTTTCCTAAAACTCGTTTGTTCATCTTGTGAATTCTTTATTTATGTACACAAAATAAAAGTTTTGTTTCCAATCTTTATCAGGCCACACTTTTTCTATGAAT ATGGTGTACCCGGTAACAAGTTCATGGGCGAGAGCTCTGGTTCAGATCTCTCCTTACACCTTCTCGGCCCTCGGCATCGCCCTTTCCATTGGCATCTCCGTCCTCGGCGCCGCCTGGGGAATTTATATTACTGGGAGTAGTTTGATTGGTGCGGCAATCAAAGCTCCTAGAATCACATCCAAAAATCTCATCAGTGTAATCTTTTGTGAAGCTGTAGCTATTTATGGAGTAATTGTCGCTATCATTCTGCAGACAAAGCTAGAGAGTGTTCCTTCATCTCTTATTTACGAACCTGAGTCACTTAGAGCAGGATATGCAATCTTTGCATCTGGACTTATTGTCGGCTTTGCCAACCTTGTTTGTGGGTTGTGTGTGGGTATAATTGGAAGCAGTTGTGCTTTATCTGATGCTCAAAACTCCACGCTGTTTGTGAAGATTTTGGTGATCGAGATTTTTGGAAGTGCCCTTGGGTTGTTCGGTGTGATTGTTGGCATCATTATGTCAGCCCAAGCAACATGGCCAAAGGCTGCATGA MVYPVTSSWARALVQISPYTFSALGIALSIGISVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSSLIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPKAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00615.1 vs. NCBI nr
Match: gi|902171241|gb|KNA07974.1| (hypothetical protein SOVF_166870 [Spinacia oleracea]) HSP 1 Score: 324.7 bits (831), Expect = 1.000e-85 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of Spo00615.1 vs. NCBI nr
Match: gi|731320298|ref|XP_010670731.1| (PREDICTED: V-type proton ATPase subunit c''2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 321.6 bits (823), Expect = 8.400e-85 Identity = 173/177 (97.74%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of Spo00615.1 vs. NCBI nr
Match: gi|604302011|gb|EYU21597.1| (hypothetical protein MIMGU_mgv1a013070mg [Erythranthe guttata]) HSP 1 Score: 299.3 bits (765), Expect = 4.500e-78 Identity = 160/169 (94.67%), Postives = 168/169 (99.41%), Query Frame = 1
BLAST of Spo00615.1 vs. NCBI nr
Match: gi|470110431|ref|XP_004291487.1| (PREDICTED: V-type proton ATPase subunit c''2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 299.3 bits (765), Expect = 4.500e-78 Identity = 161/169 (95.27%), Postives = 167/169 (98.82%), Query Frame = 1
BLAST of Spo00615.1 vs. NCBI nr
Match: gi|848919174|ref|XP_012856703.1| (PREDICTED: V-type proton ATPase subunit c''2 [Erythranthe guttata]) HSP 1 Score: 299.3 bits (765), Expect = 4.500e-78 Identity = 160/169 (94.67%), Postives = 168/169 (99.41%), Query Frame = 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QL53_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166870 PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 7.000e-86 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043400 PE=3 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 5.900e-85 Identity = 173/177 (97.74%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Match: A0A022PZ33_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013070mg PE=3 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 3.100e-78 Identity = 160/169 (94.67%), Postives = 168/169 (99.41%), Query Frame = 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Match: G7KRP2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g090330 PE=2 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.000e-77 Identity = 160/169 (94.67%), Postives = 166/169 (98.22%), Query Frame = 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Match: M0RLU0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 2.600e-77 Identity = 157/170 (92.35%), Postives = 168/170 (98.82%), Query Frame = 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Match: VATO1_ARATH (V-type proton ATPase subunit c''1 OS=Arabidopsis thaliana GN=VHA-c''1 PE=1 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 1.300e-77 Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Match: VATO2_ARATH (V-type proton ATPase subunit c''2 OS=Arabidopsis thaliana GN=VHA-c''2 PE=1 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 1.300e-77 Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Match: VATO_YEAST (V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 PE=1 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.000e-45 Identity = 93/165 (56.36%), Postives = 133/165 (80.61%), Query Frame = 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Match: VATO_MOUSE (V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=1 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.500e-44 Identity = 94/163 (57.67%), Postives = 129/163 (79.14%), Query Frame = 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Match: VATO_HUMAN (V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 3.200e-44 Identity = 93/163 (57.06%), Postives = 129/163 (79.14%), Query Frame = 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Match: AT2G25610.1 (ATPase, F0/V0 complex, subunit C protein) HSP 1 Score: 290.4 bits (742), Expect = 7.400e-79 Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Match: AT4G32530.2 (ATPase, F0/V0 complex, subunit C protein) HSP 1 Score: 274.6 bits (701), Expect = 4.200e-74 Identity = 156/198 (78.79%), Postives = 164/198 (82.83%), Query Frame = 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Match: AT1G19910.1 (ATPase, F0/V0 complex, subunit C protein) HSP 1 Score: 86.7 bits (213), Expect = 1.600e-17 Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Match: AT2G16510.1 (ATPase, F0/V0 complex, subunit C protein) HSP 1 Score: 86.7 bits (213), Expect = 1.600e-17 Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Match: AT4G38920.1 (vacuolar-type H(+)-ATPase C3) HSP 1 Score: 86.7 bits (213), Expect = 1.600e-17 Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00615.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00615.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00615.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00615.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|