Spo00626 (gene) | SpinachBase

Overview


Name	Spo00626
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47)
Location	chr3 : 56082044 .. 56082487 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

mRNA sequence

ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

Coding sequence (CDS)

ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

Protein sequence

MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASLYGNTQKNIHRERDDTHKS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00626.1	Spo00626.1	mRNA

Homology

[Close]

BLAST of Spo00626.1 vs. NCBI nr
Match: gi|959122459|ref|YP_009183015.1| (photosystem II CP47 chlorophyll apoprotein (plastid) [Plantago maritima])

HSP 1 Score: 270.8 bits (691), Expect = 1.400e-69
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASL 130
           WFTFGHASL
Sbjct: 450 WFTFGHASL 458

[Close]

BLAST of Spo00626.1 vs. NCBI nr
Match: gi|27446519|gb|AAG12383.1| (photosystem II CP47 protein [Rheum x hybridum])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 317 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 376

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 377 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 436

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 437 WFTFGHAS 444

[Close]

BLAST of Spo00626.1 vs. NCBI nr
Match: gi|12278|emb|CAA26691.1| (unnamed protein product (chloroplast) [Spinacia oleracea])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. NCBI nr
Match: gi|305672023|gb|ADM63396.1| (photosystem II cp47 protein, partial (chloroplast) [Ilex crenata])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 320 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 379

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 380 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 439

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 440 WFTFGHAS 447

[Close]

BLAST of Spo00626.1 vs. NCBI nr
Match: gi|910354342|ref|YP_009160828.1| (PsbB (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: A0A0S1EIH0_9LAMI (Photosystem II CP47 reaction center protein OS=Plantago maritima GN=psbB PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.900e-70
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASL 130
           WFTFGHASL
Sbjct: 450 WFTFGHASL 458

[Close]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: H6T962_MOLVE (Photosystem II CP47 reaction center protein (Fragment) OS=Mollugo verticillata GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: G4WP22_CLAVI (Photosystem II CP47 reaction center protein (Fragment) OS=Claytonia virginica GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 283 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 342

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 343 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 402

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 403 WFTFGHAS 410

[Close]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K898_9CARY (Photosystem II CP47 reaction center protein OS=Haloxylon ammodendron GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: Q8HS22_9CARY (Photosystem II CP47 reaction center protein (Fragment) OS=Rheum rhabarbarum GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 317 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 376

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 377 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 436

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 437 WFTFGHAS 444

[Close]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_FAGEA (Photosystem II CP47 reaction center protein OS=Fagopyrum esculentum subsp. ancestrale GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.600e-71
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_SPIOL (Photosystem II CP47 reaction center protein OS=Spinacia oleracea GN=psbB PE=1 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 2.600e-71
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_NANDO (Photosystem II CP47 reaction center protein OS=Nandina domestica GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_CARPA (Photosystem II CP47 reaction center protein OS=Carica papaya GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_LOTJA (Photosystem II CP47 reaction center protein OS=Lotus japonicus GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

[Close]

BLAST of Spo00626.1 vs. TAIR (Arabidopsis)
Match: ATCG00680.1 (photosystem II reaction center protein B)

HSP 1 Score: 266.5 bits (680), Expect = 9.400e-72
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 1

		  
Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FR+KEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457

The following BLAST results are available for this feature:

BLAST of Spo00626.1 vs. NCBI nr
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
BLAST of Spo00626.1 vs. TAIR (Arabidopsis)

BLAST of Spo00626.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|959122459\|ref\|YP_009183015.1\|	1.4e-69	99.2	photosystem II CP47 chlorophyl...	[more]
gi\|27446519\|gb\|AAG12383.1\|	4.1e-69	100.	photosystem II CP47 protein [R...	[more]
gi\|12278\|emb\|CAA26691.1\|	4.1e-69	100.	unnamed protein product (chlor...	[more]
gi\|305672023\|gb\|ADM63396.1\|	4.1e-69	100.	photosystem II cp47 protein, p...	[more]
gi\|910354342\|ref\|YP_009160828.1\|	4.1e-69	100.	PsbB (chloroplast) [Haloxylon ...	[more]

BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0S1EIH0_9LAMI	9.9e-70	99.2	Photosystem II CP47 reaction c...	[more]
H6T962_MOLVE	2.9e-69	100.	Photosystem II CP47 reaction c...	[more]
G4WP22_CLAVI	2.9e-69	100.	Photosystem II CP47 reaction c...	[more]
A0A0K0K898_9CARY	2.9e-69	100.	Photosystem II CP47 reaction c...	[more]
Q8HS22_9CARY	2.9e-69	100.	Photosystem II CP47 reaction c...	[more]

BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
PSBB_FAGEA	2.6e-71	100.	Photosystem II CP47 reaction c...	[more]
PSBB_SPIOL	2.6e-71	100.	Photosystem II CP47 reaction c...	[more]
PSBB_NANDO	3.4e-71	99.2	Photosystem II CP47 reaction c...	[more]
PSBB_CARPA	3.4e-71	99.2	Photosystem II CP47 reaction c...	[more]
PSBB_LOTJA	3.4e-71	99.2	Photosystem II CP47 reaction c...	[more]

BLAST of Spo00626.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ATCG00680.1	9.4e-72	97.6	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..128 score: 5.8
IPR000932	Photosystem antenna protein-like	unknown	SSF161077	Photosystem II antenna protein-like	coord: 1..129 score: 8.37
None	No IPR available	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 1..129 score: 2.2E
None	No IPR available	PANTHER	PTHR33180:SF8	SUBFAMILY NOT NAMED	coord: 1..129 score: 2.2E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16490	0.85	Barchart \| Table
Spo11904	0.84	Barchart \| Table
Spo16485	0.83	Barchart \| Table
Spo06201	0.82	Barchart \| Table
Spo08440	0.82	Barchart \| Table
Spo17010	0.82	Barchart \| Table
Spo24708	0.81	Barchart \| Table
Spo26127	0.81	Barchart \| Table
Spo17923	0.81	Barchart \| Table
Spo04277	0.81	Barchart \| Table
Spo06200	0.81	Barchart \| Table
Spo16484	0.80	Barchart \| Table
Spo09413	0.80	Barchart \| Table
Spo25004	0.80	Barchart \| Table
Spo13959	0.79	Barchart \| Table
Spo25555	0.79	Barchart \| Table
Spo02851	0.79	Barchart \| Table
Spo24707	0.78	Barchart \| Table
Spo18044	0.77	Barchart \| Table
Spo24719	0.77	Barchart \| Table
Spo11124	0.76	Barchart \| Table
Spo04278	0.76	Barchart \| Table
Spo05875	0.76	Barchart \| Table
Spo10627	0.76	Barchart \| Table
Spo01748	0.76	Barchart \| Table
Spo22573	0.76	Barchart \| Table
Spo25537	0.76	Barchart \| Table
Spo25538	0.76	Barchart \| Table
Spo17924	0.75	Barchart \| Table
Spo24718	0.75	Barchart \| Table
Spo19560	0.75	Barchart \| Table
Spo19561	0.74	Barchart \| Table
Spo24717	0.74	Barchart \| Table
Spo22445	0.73	Barchart \| Table
Spo17927	0.72	Barchart \| Table
Spo17925	0.72	Barchart \| Table
Spo26126	0.71	Barchart \| Table
Spo19336	0.71	Barchart \| Table
Spo22572	0.71	Barchart \| Table
Spo16486	0.70	Barchart \| Table
Spo21946	0.70	Barchart \| Table
Spo14104	0.69	Barchart \| Table
Spo05412	0.68	Barchart \| Table
Spo23916	0.67	Barchart \| Table
Spo16196	0.67	Barchart \| Table
Spo01972	0.67	Barchart \| Table
Spo19530	0.66	Barchart \| Table
Spo13650	0.66	Barchart \| Table
Spo14815	0.66	Barchart \| Table