Spo00653 (gene)

Overview
NameSpo00653
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02294 : 62487 .. 65931 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGCCCGCTATTCTGCCACTTTTCAATTTCGTTATCCCGCTGCACCCTCACCTGCTCTCGTAAATTTTTTCTATTCATTCAATTTTGTCTCCGCTCTTGCAAATCCTCTCTAGTTCGAAAATTTTGGGTTTTTCATGGAAAAATTCGAGTCGTTAATTGCGACATCAGATGTTGAGCTGCTCGATAGAGCTTGACACAACGAAAAACCTGCTCAAGAAATTCTTCAATTCCAGGCTCTTTTGGTTCAGAGATCTTATCCTCAACAGATCTCGCTAGCAAATTCAATCTATGGTATACATTCTCTCTCAATCAAAAACCCTAATTTTTTTTGTAGTATAACACTTTTTAAATACAATTGACAGTCAGTTCAGAATTTCTCTTTCTTAAATTTCGTATGATAAATTAATAATACATTTATTATTAGACTACAAGATCTGGCTGAAACAACTGGAAATTTTGGTGCTTTTTAATTGGGAAAAATCTGCTAACTGGCTAACTGCTCCAATTTTGTAATAAGCTGGTTTCTTGGATTAGAAGTGAAAGAGATGCAGTTACAATTGCTTTTTCTAATTTAATATCTCACCCTTTTGCTGCTTGCTACTTGTTGAAATTGTCGATTAACCTGAATGGCAGCTCTATGCTCTCGTTATTGTCAAAATCTTAAACTTCAGATTATGCAGTTCTTGAAGCAATATCAACGGCGACTTCAGATTCGCCTAATTCATCAATTCCAGTCCAAATCAGTAGAATTTGGGTGATTAAAATTCCCAAGTTCATTTCGAGTTTCCATTATTATCTCCATATCTTGCTTATTAGTAGAATTTGGGTGTTTCAAATCCTGTGTATTCTTCTTAAAAAAAATTCGGAATGTTATTCTAATGGGTTGAGAAATTGGGGTTTCTAACTTTTTATTTATTTATTATTTTTTGGGTTTGTTTTTGGTTAAATTGAATTGAGGTCAGGTTCGAATCATTGACCTGAATTACCCGGTGATGAATTGAACTTGAAGTAACCCAATTTGATCCTTTGTCGTTGCTCTTTTCTTACGCGTTTGATTATGATTTTGGATTCCATTTATGTTTTTCTCAATTGGATTAGTTTCTCTGTTTGTTAAAATGGTCTAATATCAATTGAATTAGGAAATGAAGTTAGGGTTTGAGTTATTGCTTTTGCTAAATATGATAGAACTACATAAACGAAAACTGTAGTTTAAGCGCCTAAGGCGTTTCATGGATAAGTGTCATTGTAAAAAAGTTGTTTGTTTTGTGAATATCTTAGTAAAGAGCTTAATATTAGCAAAGAAAAATTTTATGTTTAAAAGAAATGGTTTTTTTGGAGTCACTATGAACTTCAGGAACTCGGCTTCAACGGACATCCCGAGTCAATTTCGTAATTCACCTTCGTTTTATAGAGTTCTTATGCCTTATATCTCAAATTTGTTATTTTTAATTAATTCATGTGATTTATGTCAGTTTTATCTGATATGTTTTATGCAATAAGTGCTACTCTTGGTTGTTCTTTTTCTCTGTTTTTCTTTTTCCAAATTAATTTCAGGATTGAAGAATGTTTCATCCAAATTCTGGTCATGGTTTCATGGTCTGTGCAGGACATATATGAACAAAGTTGGGTAAAAAGTATGATAAGGAGAAATCAGAAAAGTTTGACTCCTAAATCTGTTGCTTCCGTTTTAAGGTGTAAAATAAGTACTGGTGGATTGAATCTAAAATAAGTAATGTTGCTTCTGTTTTGAGTGAACTCCTAATGTTTATCTTTACTGCTGTTGTTGCTGCTACTTCTGTTTTAAGGTTTTAAATATGTTCTAAATCTTGTTATATATTGAATCTGAACATTTCAAGATGATCAGAGTTACATGTACAGAAGCAAACTAATTGAAACAAGGGTAGTTGAGTTGTTAGCATGTTGTCTAAACTCTAAAGTTCTTTTCATAGATTGAATTGATTAGGATGCTGAGTTCGTGGTTACACAAGTTTGGTTTTAGTGTTAGAATGGGTATTTGAGGTGAAATAAAGAGCCGGGAGTACCCATAGGCTTTAGGACTCACTGAGTAATTGATCTGATGACTATCCTGGAATTGCAGTGGACTATTTTCAGTCACTTTTGTCACTAAAGTTAAATGTAGTGCCTGAAGTGTTGTCATGATAATTCTTCTTTGCTGCTGGGTTTTGGCCCTTCCTAGAAGGTTCGGAAACACAGTTTTGAACTAGGTTATAACTGTGTTCAGTTTTGAATATATCAGCTATAACTGTAATTGTGTTATGTTACAGTTGCTTATGACCTCACTGTGCACCCTAACCTTCATGGTGGATATCTTGCTTTAACTTCACATGTACTTTAATGATTCTCTTTCTTCTGGTCAGTAAAATAATGTTCTTCAACCTGCTTGGATGTTTTCTTCATTAGATCGATTCAATAATGAAAATAAATTCATGTTTCCACATTAGAAACTTGTAGTATAGTACCTGTGTTATGTAACATAGTACTATACCAAAAATTTCCTTAATAGACTGATATTGAAGTTACTCTTAAACCGATGTTTTGTTACCTATCATGTTTATGTTTCCATTCAATACTGAAAATAAAATCCCACCCGACTCATGTTTCCACAACAAGCATCAACAATGATCAACATAGTTTAAATTTAGCAATCTCTTGATATGTACTGAATCATGCCGCAATGTCTACCAGAGAAAATGCTGCTAGAGTGTCAGTACGTGCTAGTCGAAAGACATGATTTTTAAGCATTAAGCATATCCGTTTTACCTTTCTTATCGGTCTTTAATTGAATCTCTCTGACACGTCCTGTGATCTCTGTAATTTTCTTTGTTCGGTCAGAGACAATATACAAGGTACATTGTCTTGATTAGGAGCTGTACCTAGTTCATCAGATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATGTCAGTCTCTACATTTTCTCTCATATGTACTTGTTCAGTGTGTTGTTGTGTACAGATGTATGCATTACTAATAAATATGACTTTTTCACTTGTTTTGTTCCAGCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

mRNA sequence

GGTGCCCGCTATTCTGCCACTTTTCAATTTCGTTATCCCGCTGCACCCTCACCTGCTCTCGTAAATTTTTTCTATTCATTCAATTTTGTCTCCGCTCTTGCAAATCCTCTCTAGTTCGAAAATTTTGGGTTTTTCATGGAAAAATTCGAGTCGTTAATTGCGACATCAGATGTTGAGCTGCTCGATAGAGCTTGACACAACGAAAAACCTGCTCAAGAAATTCTTCAATTCCAGGCTCTTTTGGTTCAGAGATCTTATCCTCAACAGATCTCGCTAGCAAATTCAATCTATGAGACAATATACAAGGTACATTGTCTTGATTAGGAGCTGTACCTAGTTCATCAGATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

Coding sequence (CDS)

ATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

Protein sequence

MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLHFSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYALTESMFPLLEKAAPDSQLDVNVFRC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00653.1Spo00653.1mRNA


Homology
[Close]
BLAST of Spo00653.1 vs. NCBI nr
Match: gi|902217521|gb|KNA17752.1| (hypothetical protein SOVF_077180 [Spinacia oleracea])

HSP 1 Score: 301.6 bits (771), Expect = 7.400e-79
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLH 60
           MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGA+FPSFTSPLLH
Sbjct: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGARFPSFTSPLLH 60

Query: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120
           FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL
Sbjct: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120

Query: 121 TESMFPLLEKAAPDSQLDVNVFRC 145
           TESMFPLLEKAAPDSQLDVNVFRC
Sbjct: 121 TESMFPLLEKAAPDSQLDVNVFRC 144
[Close]
BLAST of Spo00653.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFZ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077180 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.100e-79
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLH 60
           MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGA+FPSFTSPLLH
Sbjct: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGARFPSFTSPLLH 60

Query: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120
           FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL
Sbjct: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120

Query: 121 TESMFPLLEKAAPDSQLDVNVFRC 145
           TESMFPLLEKAAPDSQLDVNVFRC
Sbjct: 121 TESMFPLLEKAAPDSQLDVNVFRC 144
The following BLAST results are available for this feature:
BLAST of Spo00653.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902217521|gb|KNA17752.1|7.4e-7999.3hypothetical protein SOVF_0771... [more]
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BLAST of Spo00653.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RFZ4_SPIOL5.1e-7999.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00653.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo00653.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0007276 gamete generation
biological_process GO:0009561 megagametogenesis
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0016567 protein ubiquitination
biological_process GO:0051302 regulation of cell division
biological_process GO:0007267 cell-cell signaling
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009616 virus induced gene silencing
cellular_component GO:0005819 spindle
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo092140.76Barchart | Table
Spo076850.74Barchart | Table
Spo247360.74Barchart | Table
Spo013440.72Barchart | Table
Spo209300.72Barchart | Table
Spo234010.71Barchart | Table
Spo133200.71Barchart | Table
Spo001460.71Barchart | Table
Spo007160.70Barchart | Table
Spo209120.70Barchart | Table
Spo038650.70Barchart | Table
Spo039500.70Barchart | Table
Spo056210.70Barchart | Table
Spo031630.70Barchart | Table
Spo011870.70Barchart | Table
Spo131610.70Barchart | Table
Spo269900.70Barchart | Table
Spo052690.70Barchart | Table
Spo132380.69Barchart | Table
Spo182850.69Barchart | Table
Spo179790.69Barchart | Table
Spo255730.69Barchart | Table
Spo255510.69Barchart | Table
Spo233260.69Barchart | Table
Spo084160.69Barchart | Table
Spo226940.68Barchart | Table
Spo041040.68Barchart | Table
Spo224360.68Barchart | Table
Spo218230.68Barchart | Table
Spo142400.68Barchart | Table
Spo216000.68Barchart | Table
Spo180810.68Barchart | Table
Spo096840.68Barchart | Table
Spo210440.68Barchart | Table
Spo100210.68Barchart | Table
Spo011960.68Barchart | Table
Spo108950.68Barchart | Table
Spo237450.68Barchart | Table
Spo161860.68Barchart | Table
Spo149420.68Barchart | Table
Spo024780.68Barchart | Table
Spo189800.68Barchart | Table
Spo147120.68Barchart | Table
Spo190130.68Barchart | Table
Spo053800.68Barchart | Table
Spo177290.67Barchart | Table
Spo018220.67Barchart | Table
Spo054500.67Barchart | Table
Spo057650.67Barchart | Table
Spo068110.67Barchart | Table
Spo069230.67Barchart | Table
Spo105000.67Barchart | Table
Spo114350.67Barchart | Table
Spo115340.67Barchart | Table
Spo125430.67Barchart | Table
Spo126580.67Barchart | Table
Spo132810.67Barchart | Table
Spo163610.67Barchart | Table
Spo168040.67Barchart | Table
Spo172200.67Barchart | Table
Spo181300.67Barchart | Table
Spo251070.67Barchart | Table
Spo259810.67Barchart | Table
Spo262850.67Barchart | Table
Spo264810.67Barchart | Table
Spo001610.66Barchart | Table
Spo253300.66Barchart | Table
Spo193280.66Barchart | Table
Spo176770.66Barchart | Table
Spo173860.66Barchart | Table
Spo173440.66Barchart | Table
Spo112850.66Barchart | Table
Spo155850.66Barchart | Table
Spo100190.66Barchart | Table
Spo084350.66Barchart | Table
Spo082750.66Barchart | Table
Spo218330.66Barchart | Table
Spo223920.66Barchart | Table
Spo081820.66Barchart | Table
Spo070790.66Barchart | Table
Spo201550.66Barchart | Table
Spo142730.66Barchart | Table
Spo034160.66Barchart | Table
Spo238070.66Barchart | Table
Spo208520.66Barchart | Table
Spo244300.66Barchart | Table
Spo246970.66Barchart | Table
Spo027490.66Barchart | Table
Spo065800.65Barchart | Table
Spo201870.65Barchart | Table
Spo130870.65Barchart | Table
Spo148720.65Barchart | Table
Spo053070.65Barchart | Table
Spo243690.65Barchart | Table
Spo003990.65Barchart | Table
Spo002830.65Barchart | Table