Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTATTTTTATTTTTATTTTTATTTTTTAATTTATTTTACTTTTATTTTAATTTTTAATTTTTTTAATCAATCCTCTTCTATTGAATTTCGGTCTTTCTGGAACACCCCACGCCCCCTTTCTCTCTCTCATCATTTAACTCCCTACCACGAACTTTCTAGAAACCCAACAAATAACCTACCCCCCTCTTCCTCCTCTCTTTTCCCCCCTTCCTTTCAACTTGCATCCACCTTCCTCTCTCCCTCATTCCTTACCCCCTTTCCTTATCCAATCATCTCCATTTGACCGTATCTCAATTTGGATCTGAGTCATAATCAATCATTTATCATGATTCCAGTGCCGCTGGACCAAAACGGCGACTCCACCGGTTGCGGTGGCACAGGTAGTGGTAACGCTAGCGACCTGCAGCAGCGAACTCTTCCTACGCCGTTTCTCACCAAAACTTATCTGCTTGTTGATGATCCTGTTGTCGATGATTTGATCTCGTGGAACGATGACGGAACTAGCTTCATTGTTTGGCGACCTGCGGAGTTTGCTCGTGATTTGCTTCCTAAATATTTCAAGCATAATAATTTCTCTAGCTTTGTCCGCCAACTCAACACATATGTAATTCTTATTTCTCGAACAAATTTGGATTTGGTTGTCAAATTTGAGTATTTTTGCATTCAATTAATTGATTTGATTTGTTTTTTTAGGGTTTCCGGAAGGTTATACCGGACCGGTGGGAGTTTGCGAACGATTGTTTCAAACGAGGAGAGAAAGCGCTCCTTCGTGATATTCAACGCCGGAAAATATCTCCGGCCCCGGCGATTAATTCCCCGACAGCTGTAGCTGCATGTCCGACGGCTATTCCGGCTGTGGTAACGGTAGCAGCACCACCTCCTGTCACGGTAAGGGCGGTATCACCAGCAAACTCCGGTGACGAGCAAGTGCACTCGTCAAATTCCTCCCCTGCTCCCGGTGTTGTGACGGTACAGCGAGTAGCGAGCTGCGCGTCGACGACGGAGATATTGGAAGAGAATGAGAGGCTGAGGAGTGAGAATTTCACGTTATCGCAGGAATTGAATCATTTGAGAGGATTATGTAATAATATATTGGCGATGATGAGTAACTACGCGACGGGGCAGCCCGAGACAAGCGGATTACAAGAAGGCAGGCCATTAGATTTGCTACCGACGAAACCGGTTACAGTGGCAGAAGCTGATCCTTGTGGTGCTTCTAGTGGCGGAGCCACCGCGAGTGGCGGCAGTAAGGGAGAAGAGAAGATGGAGGAAGAGGAGATGGAGGGGTGTCCCTGTCCGAGATTGTTTGGCGTTTCAATCGGAGCGAAGCGCGTGAGAAGAGAGGACGATGAGGAAAACAGAGCGAGTGTGGAAAGATCAAGATCGAGAGAGGGATCTGATCCAATACAAACGCAGCAAGAGCAACAATGTTCTGGGGAATGAAATTTCAGCCGTTGATTGATGATAATCATGAATTGTTCTGTGTAATAAACGGTCGTGATCGGGCTGTGTGATGAAAGCGACATGAGTGGGAAAGTGGACGCGTGTGGAAAGATTGTGATAGGGGAACCCACGTTTCTGGATAAGGAAATGGTTTAGAAAACAATCATCATAGAATTTGTGGATTCCTCTAGTTGGTTCTTTAGGCGGATTTCTAGAAAGTCAATGTGATTAAAGGGAGAGAGAGACTGCATTTCACAGGTGGCAGGGAGAAGCCATTGATGCTTTTATGCATACTCCTCCGTAAGAAGTTGTGACTTGTGACCCACCACACGTGTTAAACGTCAAAAGCTTTACTGAATTCTCCGTTCGAGGGGCAACGCCTAAAACATCGGAAACGGCCAAATCGGATTATCGGAAAAATGGTGCAAACTCGGAATTAAGAGTAGTTTAACATGAGTATAGTAGAGGTAGATAGACTCTTGAGCGTGTGCAAGTAGTGTTTAGAACTTAATTACATAAATGTGTTAATTTGTAGCACATTATTTGCTATTGTAAGATGTAAATATCCATTTATACGGAGTAGTCAGACTTGTTGTATTGTACTTCTATGACGTATAGAGATGACCCGTGGGTCAGTGATGACCCGTGGGTCAGATATGACCCAGCCCATAGTGGATCATTTGGGCCGGATGCGCTTATGACTCATGACATGACCCGTTCAATCCGGATATTTTTCATGTCGTGTTGTGGGTTGAGTTTTATCAACACAAGTACACAACCCATTTCAACCCGCCCCATCAGACCGATACAACCTACTACGGCACACCTGACTCACCTAACCTTTTGACACATCAAACCCGCCATCATAATTTAAGTATTTCGTATGTTAGAAATGCTAATAAATTTTAATTTTATTACTTATATGTGCAGTAACTACATGTATATGAGTATGTGAATTACATAAAAAT TTATTTTTATTTTTATTTTTATTTTTTAATTTATTTTACTTTTATTTTAATTTTTAATTTTTTTAATCAATCCTCTTCTATTGAATTTCGGTCTTTCTGGAACACCCCACGCCCCCTTTCTCTCTCTCATCATTTAACTCCCTACCACGAACTTTCTAGAAACCCAACAAATAACCTACCCCCCTCTTCCTCCTCTCTTTTCCCCCCTTCCTTTCAACTTGCATCCACCTTCCTCTCTCCCTCATTCCTTACCCCCTTTCCTTATCCAATCATCTCCATTTGACCGTATCTCAATTTGGATCTGAGTCATAATCAATCATTTATCATGATTCCAGTGCCGCTGGACCAAAACGGCGACTCCACCGGTTGCGGTGGCACAGGTAGTGGTAACGCTAGCGACCTGCAGCAGCGAACTCTTCCTACGCCGTTTCTCACCAAAACTTATCTGCTTGTTGATGATCCTGTTGTCGATGATTTGATCTCGTGGAACGATGACGGAACTAGCTTCATTGTTTGGCGACCTGCGGAGTTTGCTCGTGATTTGCTTCCTAAATATTTCAAGCATAATAATTTCTCTAGCTTTGTCCGCCAACTCAACACATATGGTTTCCGGAAGGTTATACCGGACCGGTGGGAGTTTGCGAACGATTGTTTCAAACGAGGAGAGAAAGCGCTCCTTCGTGATATTCAACGCCGGAAAATATCTCCGGCCCCGGCGATTAATTCCCCGACAGCTGTAGCTGCATGTCCGACGGCTATTCCGGCTGTGGTAACGGTAGCAGCACCACCTCCTGTCACGGTAAGGGCGGTATCACCAGCAAACTCCGGTGACGAGCAAGTGCACTCGTCAAATTCCTCCCCTGCTCCCGGTGTTGTGACGGTACAGCGAGTAGCGAGCTGCGCGTCGACGACGGAGATATTGGAAGAGAATGAGAGGCTGAGGAGTGAGAATTTCACGTTATCGCAGGAATTGAATCATTTGAGAGGATTATGTAATAATATATTGGCGATGATGAGTAACTACGCGACGGGGCAGCCCGAGACAAGCGGATTACAAGAAGGCAGGCCATTAGATTTGCTACCGACGAAACCGGTTACAGTGGCAGAAGCTGATCCTTGTGGTGCTTCTAGTGGCGGAGCCACCGCGAGTGGCGGCAGTAAGGGAGAAGAGAAGATGGAGGAAGAGGAGATGGAGGGGTGTCCCTGTCCGAGATTGTTTGGCGTTTCAATCGGAGCGAAGCGCGTGAGAAGAGAGGACGATGAGGAAAACAGAGCGAGTGTGGAAAGATCAAGATCGAGAGAGGGATCTGATCCAATACAAACGCAGCAAGAGCAACAATGTTCTGGGGAATGAAATTTCAGCCGTTGATTGATGATAATCATGAATTGTTCTGTGTAATAAACGGTCGTGATCGGGCTGTGTGATGAAAGCGACATGAGTGGGAAAGTGGACGCGTGTGGAAAGATTGTGATAGGGGAACCCACGTTTCTGGATAAGGAAATGGTTTAGAAAACAATCATCATAGAATTTGTGGATTCCTCTAGTTGGTTCTTTAGGCGGATTTCTAGAAAGTCAATGTGATTAAAGGGAGAGAGAGACTGCATTTCACAGGTGGCAGGGAGAAGCCATTGATGCTTTTATGCATACTCCTCCGTAAGAAGTTGTGACTTGTGACCCACCACACGTGTTAAACGTCAAAAGCTTTACTGAATTCTCCGTTCGAGGGGCAACGCCTAAAACATCGGAAACGGCCAAATCGGATTATCGGAAAAATGGTGCAAACTCGGAATTAAGAGTAGTTTAACATGAGTATAGTAGAGGTAGATAGACTCTTGAGCGTGTGCAAGTAGTGTTTAGAACTTAATTACATAAATGTGTTAATTTGTAGCACATTATTTGCTATTGTAAGATGTAAATATCCATTTATACGGAGTAGTCAGACTTGTTGTATTGTACTTCTATGACGTATAGAGATGACCCGTGGGTCAGTGATGACCCGTGGGTCAGATATGACCCAGCCCATAGTGGATCATTTGGGCCGGATGCGCTTATGACTCATGACATGACCCGTTCAATCCGGATATTTTTCATGTCGTGTTGTGGGTTGAGTTTTATCAACACAAGTACACAACCCATTTCAACCCGCCCCATCAGACCGATACAACCTACTACGGCACACCTGACTCACCTAACCTTTTGACACATCAAACCCGCCATCATAATTTAAGTATTTCGTATGTTAGAAATGCTAATAAATTTTAATTTTATTACTTATATGTGCAGTAACTACATGTATATGAGTATGTGAATTACATAAAAAT ATGATTCCAGTGCCGCTGGACCAAAACGGCGACTCCACCGGTTGCGGTGGCACAGGTAGTGGTAACGCTAGCGACCTGCAGCAGCGAACTCTTCCTACGCCGTTTCTCACCAAAACTTATCTGCTTGTTGATGATCCTGTTGTCGATGATTTGATCTCGTGGAACGATGACGGAACTAGCTTCATTGTTTGGCGACCTGCGGAGTTTGCTCGTGATTTGCTTCCTAAATATTTCAAGCATAATAATTTCTCTAGCTTTGTCCGCCAACTCAACACATATGGTTTCCGGAAGGTTATACCGGACCGGTGGGAGTTTGCGAACGATTGTTTCAAACGAGGAGAGAAAGCGCTCCTTCGTGATATTCAACGCCGGAAAATATCTCCGGCCCCGGCGATTAATTCCCCGACAGCTGTAGCTGCATGTCCGACGGCTATTCCGGCTGTGGTAACGGTAGCAGCACCACCTCCTGTCACGGTAAGGGCGGTATCACCAGCAAACTCCGGTGACGAGCAAGTGCACTCGTCAAATTCCTCCCCTGCTCCCGGTGTTGTGACGGTACAGCGAGTAGCGAGCTGCGCGTCGACGACGGAGATATTGGAAGAGAATGAGAGGCTGAGGAGTGAGAATTTCACGTTATCGCAGGAATTGAATCATTTGAGAGGATTATGTAATAATATATTGGCGATGATGAGTAACTACGCGACGGGGCAGCCCGAGACAAGCGGATTACAAGAAGGCAGGCCATTAGATTTGCTACCGACGAAACCGGTTACAGTGGCAGAAGCTGATCCTTGTGGTGCTTCTAGTGGCGGAGCCACCGCGAGTGGCGGCAGTAAGGGAGAAGAGAAGATGGAGGAAGAGGAGATGGAGGGGTGTCCCTGTCCGAGATTGTTTGGCGTTTCAATCGGAGCGAAGCGCGTGAGAAGAGAGGACGATGAGGAAAACAGAGCGAGTGTGGAAAGATCAAGATCGAGAGAGGGATCTGATCCAATACAAACGCAGCAAGAGCAACAATGTTCTGGGGAATGA MIPVPLDQNGDSTGCGGTGSGNASDLQQRTLPTPFLTKTYLLVDDPVVDDLISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDRWEFANDCFKRGEKALLRDIQRRKISPAPAINSPTAVAACPTAIPAVVTVAAPPPVTVRAVSPANSGDEQVHSSNSSPAPGVVTVQRVASCASTTEILEENERLRSENFTLSQELNHLRGLCNNILAMMSNYATGQPETSGLQEGRPLDLLPTKPVTVAEADPCGASSGGATASGGSKGEEKMEEEEMEGCPCPRLFGVSIGAKRVRREDDEENRASVERSRSREGSDPIQTQQEQQCSGE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00709.1 vs. NCBI nr
Match: gi|902131573|gb|KNA04285.1| (hypothetical protein SOVF_201140 [Spinacia oleracea]) HSP 1 Score: 674.5 bits (1739), Expect = 9.900e-191 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
BLAST of Spo00709.1 vs. NCBI nr
Match: gi|731331177|ref|XP_010676525.1| (PREDICTED: heat stress transcription factor B-2b-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 488.8 bits (1257), Expect = 7.700e-135 Identity = 261/344 (75.87%), Postives = 282/344 (81.98%), Query Frame = 1
BLAST of Spo00709.1 vs. NCBI nr
Match: gi|289466351|gb|ADC94861.1| (HSP transcription factor [Vitis pseudoreticulata]) HSP 1 Score: 356.3 bits (913), Expect = 6.000e-95 Identity = 202/331 (61.03%), Postives = 232/331 (70.09%), Query Frame = 1
BLAST of Spo00709.1 vs. NCBI nr
Match: gi|225426819|ref|XP_002283139.1| (PREDICTED: heat stress transcription factor B-2b [Vitis vinifera]) HSP 1 Score: 356.3 bits (913), Expect = 6.000e-95 Identity = 199/331 (60.12%), Postives = 230/331 (69.49%), Query Frame = 1
BLAST of Spo00709.1 vs. NCBI nr
Match: gi|147852112|emb|CAN82265.1| (hypothetical protein VITISV_009283 [Vitis vinifera]) HSP 1 Score: 355.9 bits (912), Expect = 7.800e-95 Identity = 199/331 (60.12%), Postives = 230/331 (69.49%), Query Frame = 1
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_201140 PE=3 SV=1) HSP 1 Score: 674.5 bits (1739), Expect = 6.900e-191 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F884_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g100880 PE=3 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 5.400e-135 Identity = 261/344 (75.87%), Postives = 282/344 (81.98%), Query Frame = 1
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Match: F6HUF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04170 PE=3 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.200e-95 Identity = 199/331 (60.12%), Postives = 230/331 (69.49%), Query Frame = 1
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Match: D3Y3F4_VITPS (HSP transcription factor OS=Vitis pseudoreticulata PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.200e-95 Identity = 202/331 (61.03%), Postives = 232/331 (70.09%), Query Frame = 1
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Match: A5AK60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009283 PE=3 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 5.400e-95 Identity = 199/331 (60.12%), Postives = 230/331 (69.49%), Query Frame = 1
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 6.400e-81 Identity = 186/357 (52.10%), Postives = 225/357 (63.03%), Query Frame = 1
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 5.100e-70 Identity = 157/315 (49.84%), Postives = 198/315 (62.86%), Query Frame = 1
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 6.900e-67 Identity = 158/308 (51.30%), Postives = 192/308 (62.34%), Query Frame = 1
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 3.700e-60 Identity = 135/306 (44.12%), Postives = 183/306 (59.80%), Query Frame = 1
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 3.100e-51 Identity = 124/298 (41.61%), Postives = 167/298 (56.04%), Query Frame = 1
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Match: AT4G11660.1 (winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 302.4 bits (773), Expect = 3.600e-82 Identity = 186/357 (52.10%), Postives = 225/357 (63.03%), Query Frame = 1
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Match: AT5G62020.1 (heat shock transcription factor B2A) HSP 1 Score: 233.4 bits (594), Expect = 2.100e-61 Identity = 135/306 (44.12%), Postives = 183/306 (59.80%), Query Frame = 1
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Match: AT1G46264.1 (heat shock transcription factor B4) HSP 1 Score: 192.2 bits (487), Expect = 5.300e-49 Identity = 125/315 (39.68%), Postives = 167/315 (53.02%), Query Frame = 1
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Match: AT4G36990.1 (heat shock factor 4) HSP 1 Score: 188.0 bits (476), Expect = 9.900e-48 Identity = 118/289 (40.83%), Postives = 167/289 (57.79%), Query Frame = 1
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Match: AT4G17750.1 (heat shock factor 1) HSP 1 Score: 154.8 bits (390), Expect = 9.300e-38 Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00709.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00709.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00709.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00709.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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