Spo00721 (gene) | SpinachBase

Overview


Name	Spo00721
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Replication factor C subunit 2
Location	chr6 : 38449729 .. 38458204 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGTCTTCATCGAGTAGCGGATACGAGGTACCATGGGTGGAGAAGTACAGACCCAACAAGGTTGCTGACATCGTCGGCAACGAAGATGCTGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATCTTGGCCGTACTTTCTTTTTTCCCTCCTTCAATCTCTCAAAAATTACTGATTTTTTTGACATTTTCATGTCTTCAATTTGTTAGATTTTGTTGAAAGCCACTGGTATTTTAACGAGCTTTGCATTTCGTTGTTTTCCCGCAATTTTTGTACCTGTGTCTTTTTGTGAGAATTTTCTCGAATTGGAGCTTTCTGTTGCTGATTTAAAGTACTACACAACTGGGTTTCTAATTTTCAGTGCCTTTTTCTATGTTTGTATTGATTTGCTGGTGTTTCGGTTGAACCCTAATGTGTATTGTACTTTAACATTTTCTGAAATTGAACAGTTTATTTGTTGAAATATTGGGATATTTGTTGTAGAAATTGTTGTTGCCTGCAATTCAATTGCAAAATGCTGTTTGGGTGTGTTAAATTAGGTGTCCTATGGACCGGTGATTTGAATTTCTACAACAATCCTACTATTTAAGGGAGAATTAGGGTAGATGAAGAAATTGTTAAATTTTGAAGAAGGCGAAATAGAGCTACCACTTAGATTGTGTTATCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGTATATGTTCCTATTATTTGCAGTTAAATCTCCAAAATTTTCGCTTTTTTGGAAGTTCGGTGATTCCAAGTCCTGTGGTAAAGGTGTTGATGTATTGAGATCAAGGAGACTACTTTGCCACTTGTTGCCTTGGAAAAGAGCTACTTATTGGAGGTTTGTCTGGCAGAAAACATATGCTATATCAATTGAGTTTGATGTCAATATTTTTGCTTGTTGGTGCAATGGTCTGACAGAAATTATCTGGGAATATTTTTAGTCGAAAACCATTTTCTTCAAGAAAGAGGGGTGCTGTGTATGTAAGGTCGGGTCGTGGTTTTTCTTTAAGAAGATCAAAGGTCGTAAGTCTCTCTTGAACCAGTTTAAAATGGTCCGAGTCCATGGAAAAGCGTTCAAAGAAGTTTGAAGATGTTAGTTATGTATTTATTTCAATGTAATTTCTACAAATGAGATTGTTTTCTTGTGGCTCTTCACTAATAAATGGGTGCACCATACAGCTTGTAAATAGGTAACTTCATCCTCACCTGTAGCATATTTGGTGGAAAGACAAAGAAATAACAAGGCTGGTGGGATATTAAGAGGTAGAACTGTAGAACTTTATTTAATAATTAAATGGTCTTCCTTATTCAAAATCATGTCTTGGAAGGCTTAATTCTTTATGTCTGACAAAAATTGTGAATTTGGCTGTCAAATTCTATTCTTTCACTTAGTTCTTAATAGTAAAATCAGAATAAGTATCTATATTTTTAGATGTACATATGTATGCTTGGATTTCTTGGAAATTCCTGAGAATCATCCATGTCTGAGGACCTAACACTGCAAGGTTAAATAAACATATTGTCTACTAATTCCTAGAAAGTGACATACTTTAAGTGACACAATTCCAGATATTGACCAGGCTATTAAAGTTATGTTAAGTTATTTGATATTTTTCTCAAGTGTTTCTGCACAAGTATTGAGCTGCTACTGTCAACTTGCAGAATTGAATAGATAAGAATAGTCTAAGGGCAAAACAATTTCTAAAATGTTAGACAGTCAGGAACTTTTAGCTTTTTTTGATATTTTGCAGGCCAATATTTGAAGAACCAGAGAGAGATTTGTATTTATGCCTTATCAGTTGGTCGAAGAAGGTAACTATGTGATTTATACTATTAAATTAATGGTTTATTTAATCGTGTTTTCTCTAGCTAAGTCCCTGGTGATGGAGAATAATATTAGGAAATTTTGGTATTTACTACCTTTAAAATACACCACTTTTGTATTTACTACCTTATGAAATTTTTATTTTAAATTACTACCTTAAACTTCCAATTTTTTTTTTTTTACTACCACTTTACAGTTTTCTCATTTTAAAATTAAGATATCTCTTTCATTTCTTAATCGTTTAAAGTGATTCAAAGTTCATTATTTTCCTTTTTATATAGGGATTTCATTGAGAACGTCATTTCAAAAAAATTCGTTTGATAATTCATAAATATTTTAAAATTTTACAAATAATATTTATTTTGTTTAAACTTTTACGAAATGTTAAAAAGTAAGATCCCGATGGAATCCTTATAAATAAATGAGAAGAATGGGTTTTGAATCACTTAAAATGATTAAGAAACGAAAGAGATATCTCAATTTTAAAATGAGAAAATTGTAAAATGGTAGTGAATACAAAAAAAATGGAAGTTTAAGGTAGTAATTTAAAATAAATTTTTCATAAGGTAGTAAATACAAAAGTGGTGTATTTTTAAGGTAGTAAATACCAAAAAAATCATAATATTATTAATAGTTTGTAGCATGGTCAACAATAGTAAGGTCTTGTTGATCATTGTTTCCATATTATACATGTATCTTTGAGGGATATCATTGTATCCTATTTCATACCAAATTCATAGCATCATGCATTGCACTTCTAGCAAGCATGACTAAGAGAAACAGGACTCTTTACAATAATCTTTACTTTATTCATTATTTAACATCTAATTTTTTATCTCTTGAGTTTTTTTTCTCTATGAGGGTTGGCCCAGTTAGTACAGGTGTACTTCTCCCGACTCTTGTTTGTTCAATCTTCTGAATTGTCTGAGTGTACCTTTTTTCTTTTGAAACAATTTATCTCCCCCCCACCCCCTATCAGAGTTTTATGGTACAGGGGTGTAAGTCAGTAACTCGGTATAAGCTTTTCTCATGTCATTATTACGTAGCATCATTATTTATAATATATTATACTGCACTTTTAGTGTCATTTTTGGGTTAGTTGGTTAGAGGTAAAACTGTATTTACTTGGCCTGCACAGATCCTGCCAATGGAATAAATGTATACATGCTTGAGTTGTTGCTGTTTTATTTTATTTTAAAGACAAGGAAACAAAAAGCAGGCCTTCCTATATCTGGAATAAACTAGAGCTATTGTTGTTGTCAATGGCTTCTTAAACTTCTTTTTTTGTTTAGCAATTTCAATTTTGGCGATTCTTTGTTTTAATGGTCACTGTTATATCTGTTATTCTGTAGAATCCTGTTTGGTGCCAATGTGGATGATTCTTATTATGACGGTCTGCTCTGGACACTACGGTATGCCGTACATATAAGTATCTCTTAATTCTTGAATCTTCTATAACTTCTGCCTTAGATTTATTTCTGCAACATATCTTCTTAATTTGTTTGGTTCCGACTTCTATTTTTTTCTCCCTGCATGAAGGAGCTTACATCAACTCTCGATGCTGCTTGTGCCCCTAGTGATCTGGATTGATCTGCAGCAATACCTGAACTCAATGTTTTTTATGGTAGAGTGAGCAGGCGCAAGGTCCCAATCTGAAAGTTGTGGCAGTTAAGCTGGCTACTGATCTGCATGTACTATCTGCACATCAGTTACTTGCATTTTCCATAATGAGATGCAACTAGGATAGCCAACAATTTGGGCTGCTGTCTGAAGGGTTTTCCTCCTCACAGGAACATCGAATACTGGTGAGCATGTCCTTCAATCTCTAAATATTTGCTCAGAGTTGTTCTAGATAACTTTTTCAGCATTTTGATTTACAAAAGATATACTCCGTATTAATTTTAGGATTTGCTTAGCGTGTATCTACAGGGGAGCTTGGTGCTGCTCGGGCAAACCAAGACAATGCAGACACAAAAGACTTAAAAGAGCAGGTATTTACAGTTGTTGACTTCCTTATAGTTAACTTACTGTCTCTGAAGTTTGAAATGACAGTTGAAACATGTGATCACTCTGTTCTGTGCTAGGTTTCCAACCTCAAAGCAGCTTTAGCCAAGAAGGAAGAAGAAATGGAGAACCTTTCTCGTCCATTAACCAGCACTCCAGAAACAATCTGGTAAACTGATTGGCTTAAATTATCGAGTATCTAGATGAACCACTGAACATACTTGACCAGATTGATTTTATGACCCCTT

mRNA sequence

ATGGCGTCGTCTTCATCGAGTAGCGGATACGAGGTACCATGGGTGGAGAAGTACAGACCCAACAAGGTTGCTGACATCGTCGGCAACGAAGATGCTGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATCTTGGCCGTAACTTCATCCTCACCTGTAGCATATTTGGTGGAAAGACAAAGAAATAACAAGGCTGGTGGGATATTAAGAGGCCAATATTTGAAGAACCAGAGAGAGATTTGTATTTATGCCTTATCAGTTGGTCGAAGAAGAATCCTGTTTGGTGCCAATGTGGATGATTCTTATTATGACGGTCTGCTCTGGACACTACGGGTTTTCCTCCTCACAGGAACATCGAATACTGGGGAGCTTGGTGCTGCTCGGGCAAACCAAGACAATGCAGACACAAAAGACTTAAAAGAGCAGGTTTCCAACCTCAAAGCAGCTTTAGCCAAGAAGGAAGAAGAAATGGAGAACCTTTCTCGTCCATTAACCAGCACTCCAGAAACAATCTGGTAAACTGATTGGCTTAAATTATCGAGTATCTAGATGAACCACTGAACATACTTGACCAGATTGATTTTATGACCCCTT

Coding sequence (CDS)

ATGGCGTCGTCTTCATCGAGTAGCGGATACGAGGTACCATGGGTGGAGAAGTACAGACCCAACAAGGTTGCTGACATCGTCGGCAACGAAGATGCTGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATCTTGGCCGTAACTTCATCCTCACCTGTAGCATATTTGGTGGAAAGACAAAGAAATAACAAGGCTGGTGGGATATTAAGAGGCCAATATTTGAAGAACCAGAGAGAGATTTGTATTTATGCCTTATCAGTTGGTCGAAGAAGAATCCTGTTTGGTGCCAATGTGGATGATTCTTATTATGACGGTCTGCTCTGGACACTACGGGTTTTCCTCCTCACAGGAACATCGAATACTGGGGAGCTTGGTGCTGCTCGGGCAAACCAAGACAATGCAGACACAAAAGACTTAAAAGAGCAGGTTTCCAACCTCAAAGCAGCTTTAGCCAAGAAGGAAGAAGAAATGGAGAACCTTTCTCGTCCATTAACCAGCACTCCAGAAACAATCTGGTAA

Protein sequence

MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAVTSSSPVAYLVERQRNNKAGGILRGQYLKNQREICIYALSVGRRRILFGANVDDSYYDGLLWTLRVFLLTGTSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00721.1	Spo00721.1	mRNA

Homology

[Close]

BLAST of Spo00721.1 vs. NCBI nr
Match: gi|902142768|gb|KNA04791.1| (hypothetical protein SOVF_196390 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1

		  
Query: 123 TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 178
           TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW
Sbjct: 1   TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 55

[Close]

BLAST of Spo00721.1 vs. NCBI nr
Match: gi|902234229|gb|KNA23374.1| (hypothetical protein SOVF_025430 [Spinacia oleracea])

HSP 1 Score: 103.6 bits (257), Expect = 3.600e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA
Sbjct: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 51

[Close]

BLAST of Spo00721.1 vs. NCBI nr
Match: gi|902142769|gb|KNA04792.1| (hypothetical protein SOVF_196390 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 101.7 bits (252), Expect = 1.400e-18
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1

		  
Query: 125 NTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 178
           +TGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW
Sbjct: 8   STGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 60

[Close]

BLAST of Spo00721.1 vs. NCBI nr
Match: gi|224074887|ref|XP_002304476.1| (replication factor C 40 kDa family protein [Populus trichocarpa])

HSP 1 Score: 97.4 bits (241), Expect = 2.600e-17
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSS+SS Y++PWVEKYRPNKVADIVGN+DAVSRLQVIARDGNMPNLILA
Sbjct: 1  MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILA 51

[Close]

BLAST of Spo00721.1 vs. NCBI nr
Match: gi|731331183|ref|XP_010676529.1| (PREDICTED: replication factor C subunit 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 97.1 bits (240), Expect = 3.400e-17
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLIL 51
          MASSSSSSGY++PWVEKYRP KV+DIVGNEDAVSRLQVIARDGNMPNLIL
Sbjct: 1  MASSSSSSGYDIPWVEKYRPTKVSDIVGNEDAVSRLQVIARDGNMPNLIL 50

[Close]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QE33_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_196390 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.300e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1

		  
Query: 123 TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 178
           TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW
Sbjct: 1   TSNTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 55

[Close]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWS5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_025430 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.500e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA
Sbjct: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 51

[Close]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBZ4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_196390 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.600e-19
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1

		  
Query: 125 NTGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 178
           +TGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW
Sbjct: 8   STGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEMENLSRPLTSTPETIW 60

[Close]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Match: B9GWE8_POPTR (Replication factor C 40 kDa family protein OS=Populus trichocarpa GN=POPTR_0003s12340g PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.800e-17
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSS+SS Y++PWVEKYRPNKVADIVGN+DAVSRLQVIARDGNMPNLILA
Sbjct: 1  MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILA 51

[Close]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEC6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g100920 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.400e-17
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1

		  
Query: 1  MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLIL 51
          MASSSSSSGY++PWVEKYRP KV+DIVGNEDAVSRLQVIARDGNMPNLIL
Sbjct: 1  MASSSSSSGYDIPWVEKYRPTKVSDIVGNEDAVSRLQVIARDGNMPNLIL 50

[Close]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Match: RFC2_ARATH (Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.800e-17
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1

		  
Query: 1  MASSSSSS---GYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSSS+S   GY  PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLIL+
Sbjct: 1  MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILS 54

[Close]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Match: RFC4_ORYSJ (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.100e-13
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1

		  
Query: 2  ASSSSS----SGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          ASSSS+      Y++PWVEKYRP +VAD+ GN DAV+RLQ IARDGNMPNLIL+
Sbjct: 3  ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILS 56

[Close]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.500e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 1

		  
Query: 4  SSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          S ++  YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+A
Sbjct: 23 SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIA 70

[Close]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.500e-12
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 1

		  
Query: 1  MASSSSSSG-YEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          + S+ ++SG YE+PWVEKYRP K+ ++VGNED VSRL+V A++GN+PN+I+A
Sbjct: 29 LGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIA 80

[Close]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.500e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1

		  
Query: 6  SSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          S+  YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+A
Sbjct: 28 SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIA 73

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BLAST of Spo00721.1 vs. TAIR (Arabidopsis)
Match: AT1G63160.1 (replication factor C 2)

HSP 1 Score: 88.2 bits (217), Expect = 5.500e-18
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1

		  
Query: 1  MASSSSSS---GYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILA 52
          MASSSS+S   GY  PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLIL+
Sbjct: 1  MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILS 54

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BLAST of Spo00721.1 vs. TAIR (Arabidopsis)
Match: AT2G47500.1 (P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain)

HSP 1 Score: 47.8 bits (112), Expect = 8.300e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1

		  
Query: 126 TGELGAARANQDNADTKDLKEQVSNLKAALAKKEEEME 164
           T ELGAAR N D +D K+LKEQ++ LKAALA+KE E +
Sbjct: 723 TVELGAARVNNDTSDVKELKEQIATLKAALARKEAESQ 760

The following BLAST results are available for this feature:

BLAST of Spo00721.1 vs. NCBI nr
BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
BLAST of Spo00721.1 vs. TAIR (Arabidopsis)

BLAST of Spo00721.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902142768\|gb\|KNA04791.1\|	3.3e-20	100.	hypothetical protein SOVF_1963...	[more]
gi\|902234229\|gb\|KNA23374.1\|	3.6e-19	100.	hypothetical protein SOVF_0254...	[more]
gi\|902142769\|gb\|KNA04792.1\|	1.4e-18	98.1	hypothetical protein SOVF_1963...	[more]
gi\|224074887\|ref\|XP_002304476.1\|	2.6e-17	90.2	replication factor C 40 kDa fa...	[more]
gi\|731331183\|ref\|XP_010676529.1\|	3.4e-17	92.0	PREDICTED: replication factor ...	[more]

BLAST of Spo00721.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QE33_SPIOL	2.3e-20	100.	Uncharacterized protein (Fragm...	[more]
A0A0K9RWS5_SPIOL	2.5e-19	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QBZ4_SPIOL	9.6e-19	98.1	Uncharacterized protein (Fragm...	[more]
B9GWE8_POPTR	1.8e-17	90.2	Replication factor C 40 kDa fa...	[more]
A0A0J8CEC6_BETVU	2.4e-17	92.0	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo00721.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RFC2_ARATH	9.8e-17	83.3	Replication factor C subunit 2...	[more]
RFC4_ORYSJ	5.1e-13	68.5	Replication factor C subunit 4...	[more]
RFC2_RAT	9.5e-12	64.5	Replication factor C subunit 2...	[more]
RFC2_CHICK	9.5e-12	59.6	Replication factor C subunit 2...	[more]
RFC2_BOVIN	9.5e-12	67.3	Replication factor C subunit 2...	[more]

BLAST of Spo00721.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT1G63160.1	5.5e-18	83.3	replication factor C 2	[more]
AT2G47500.1	8.3e-6	63.1	P-loop nucleoside triphosphate...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 13..51 score: 9.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..50 score: 1.5
None	No IPR available	unknown	Coil	Coil	coord: 141..168 scor
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 1..51 score: 1.9
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 1..51 score: 1.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0009225	nucleotide-sugar metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0003978	UDP-glucose 4-epimerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00718	0.94	Barchart \| Table
Spo24399	0.68	Barchart \| Table
Spo11643	0.66	Barchart \| Table