Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTATTTTACCTCAACTTTTTCCATTATTTAAACACCATAACAAATTAAAATTTTCTGTCACTCTATTTTGCGCGTCTATTTACACCACCCCTCACCCTCCCTTTGTTTCGTCCTATTTCTCTCTCTTAAACCCCCCCTTTCTCTCTCTAAAATCCACCCAAATCGAATTTTGATTCATACCCAGATTTCACAATTCACTATAAAAAATCCTACCCAGAAAGTTTTTTTTTTTAAAACCCCCTCTTAAGGATTGATTTCGGGTTTTCGATCAATAAGTTAGAATTCAAAGAAGATCGAGAATTTCAGATACTCCAGAAGCCAGAACGTCGGAAGAAATTGACCTAGAAAACTGTTTTCTTGAATGGGTTCGGCGATTGGGAAGGAATCTGCAATCGGGTCAACCCGACAACCAAAGAAAACGGGTTTAGGGGATTTGCCTGAGAGCTGTGTTGCGACGGTGTTGATGAATTTGGACCCGAATGACATTTGCAGCTTGGCGAAATTGAACAAGGCTTTTCACGGAGCCTCATCTGCTGATTTTGTTTGGGAATCAAAATTACCCCCAAATTATAAGCAGATTATTGAGAAAATATCTGATGAAAACGATGATGATAATCTTCCTGTTTATTCGTGTAAAAAGGAGATTTATGCGAGTTTATCTCGATTTAATTCCATTGATGGCGGCTTAAAGGTTGGTTTAATCTTTTCATGTAATTCCCCCTAATAAATTTGGGATTATCTGAATGGGTATTGATTTTTTTTTTTTGTTGAATGGTGCAGAAGGTGTGGCTGGATAAGAACACAGGAGGGATCTGTATGGCGATATCTGCGAAGGGTTTATCAATAAATGGTATTGATGATCGAAGATATTGGAGCCACATTCCTACACAGGAATCTAGGTGAGAAATTTTATTTGCTATTTTGAATTGATATTTTCAAGGGTTCCGTTGTACGAATTGTGATTTTAATTGATAATTGCTTGCTCATTCCTCCGCAATTTGGAAGTCATTTTTGTACCATACCTGATGAGATTTCCCTGTTATATACAAAAATTTTGAGGTTGGTAATAATTTGTTGGTAGTGGGGCTTGGTTGATTGTTATTAGATTTAAGATCTAGATGATGTTAAGAGATGCCTGTTGGTTTTCCTTGTCATGATTTGAGACGAAGGTTTGATGGTACATGGAGATTGGGAACGGTTTGTGTCAGGTTATAGTTTGGCCTTTGACAGGGGATTGATGTTTTTGTGAAGCAATGGAGAGGTTGATTTTCTGTGGATCATTTGGATGTTTGTTTGACCATTAGTATTCTAGACAATCTGATCCGGGTATGTATCGATAATCGAGTCTTGCGAATCCCTATAACAAGGAAAACGCTATTGGTCCGAATAATCGAGTCTTGCGAATCCAGTCTTTTGTTTGGCTTTTGATATGGCATTGATGTTTTTGTGAAGCAATGGAGTGATGATTTTCTTTGGATTATGTTGAGGTTCTAATCGAGTTTGCCATATCTCATATGGAGAACATTATGAGTCTTAAGGTGGATTTCTGCACAAAAGTGGATTCAATAGAGAGTCTATAATTTTCCTTAGTGCTCAAATGCTGAATGTCTGAGCCCAGAGATTAAGAACTCACTTTGATGTGCAGGTTTTTTTTTCTTTTTGTTAATTCTATAATATGAAAAATTTGTATTAACATATAATTTTGTGGCTTATTTATTATCTTTTATTCTTTGGAGCTCGTTATTTTGTATTTATAGTGCTTGTTGGGTTGTCTAGATGTTGCAACATGCACATAACACATGGATGCAGCTCTACATGGCCTCTTGCTGTCTAGAGGTTGGTTCCCTTGGTTTCCCTGTTTAGGATTAGTATCCTGAATGAATGTGGAATTCGAAATTAACTATACATCCCAACTAAAAATCCGAGATTAATTTTTATACTTGCAACTAGTTCACACTAGGGTCACAAATATTAAACTTTTGTCACTCTTACAATTGGACATTGGTTAAATTTGATGGCAATACTTGTAAGTTTTATGATGATAAATCATAGTTTTTTCGAGCACCCTCCTCCCCTTAGAGAAGGATAATCTGATTATGATTAACTTGCATGGTTTTCTGGTTGGTAACTAGTGATTAATTGGGAATCCTCTGTTTTGTATGGTACACAGATTTCCATCAGTGGCTTATCTTCAACAGATCTGGTGGTTTGAGATCAACGGTGAAGTGGAGTTCCCATTCCCTGAAGGAACCTACAGTGTGTTCTTCAGGTTACAACTGGGCCGACCCGTGAAGAAGTTTGGGCGCCGAATTTGCAACACGGAGCAGATCCATGGGTGGAATGTCAAACCCGTACAATTCCAGCTTGCAACTTCAGAAGGGCAGCGAAGCGTCTCCCAGTGTTTCCTGGATAGTCCGGGGCAGTGGCTTCACTACCACGCGGGTGACTTTGTGGTAAAGAAATCAAACGGGCCAACGGTAGTGAAGTTCTCGATGATGCAGATAGATTGCACCCACACCAAAGGTGGTATATGTGTAGACTCTGTAGTGATTTACCCTAGTTCATTCAAGGAGAGACTGAAGCGTTTTTGAAGGGCTTGGTCATTCTCTAACTAGGTTTAGGAATCTCTATATTAGATGAGATGTAGATACTATATAGAGAGAAATAGAGAGAGTAAGTAAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGTAGCAGAGTGTCATGAGTTTTTTTTAGTCTTCAGGCTCTGTTATGTTATGTGTGTGGCTCATCGGCTGTAGTATGTAGAGTGAGCAGTTTATGGTGGAAATTGACAATTTAGGAAGTCATTTCCATCTCTGCTTTTGTTGTTTTAGCTTCATAGTTGGTATTTGAGGACAATAGATGCTTCGGTTGAAAAAAAACTAGCAACCTCTTGTTGTCCTTTATTTTCAATACAGTTCAGATACTCTGTGTTGTTTGGAAGGTTTTTTGAATTGGTTGATCTTTATTTTACTAAATTGTTTTTCGCAAGGCAAATTTTCTTGCTAACTTTTGTTAATGTACTGAATTGGAGACGGGGTATCCCTGAACTCTCATAGGGGG TTATTTTACCTCAACTTTTTCCATTATTTAAACACCATAACAAATTAAAATTTTCTGTCACTCTATTTTGCGCGTCTATTTACACCACCCCTCACCCTCCCTTTGTTTCGTCCTATTTCTCTCTCTTAAACCCCCCCTTTCTCTCTCTAAAATCCACCCAAATCGAATTTTGATTCATACCCAGATTTCACAATTCACTATAAAAAATCCTACCCAGAAAGTTTTTTTTTTTAAAACCCCCTCTTAAGGATTGATTTCGGGTTTTCGATCAATAAGTTAGAATTCAAAGAAGATCGAGAATTTCAGATACTCCAGAAGCCAGAACGTCGGAAGAAATTGACCTAGAAAACTGTTTTCTTGAATGGGTTCGGCGATTGGGAAGGAATCTGCAATCGGGTCAACCCGACAACCAAAGAAAACGGGTTTAGGGGATTTGCCTGAGAGCTGTGTTGCGACGGTGTTGATGAATTTGGACCCGAATGACATTTGCAGCTTGGCGAAATTGAACAAGGCTTTTCACGGAGCCTCATCTGCTGATTTTGTTTGGGAATCAAAATTACCCCCAAATTATAAGCAGATTATTGAGAAAATATCTGATGAAAACGATGATGATAATCTTCCTGTTTATTCGTGTAAAAAGGAGATTTATGCGAGTTTATCTCGATTTAATTCCATTGATGGCGGCTTAAAGAAGGTGTGGCTGGATAAGAACACAGGAGGGATCTGTATGGCGATATCTGCGAAGGGTTTATCAATAAATGGTATTGATGATCGAAGATATTGGAGCCACATTCCTACACAGGAATCTAGATTTCCATCAGTGGCTTATCTTCAACAGATCTGGTGGTTTGAGATCAACGGTGAAGTGGAGTTCCCATTCCCTGAAGGAACCTACAGTGTGTTCTTCAGGTTACAACTGGGCCGACCCGTGAAGAAGTTTGGGCGCCGAATTTGCAACACGGAGCAGATCCATGGGTGGAATGTCAAACCCGTACAATTCCAGCTTGCAACTTCAGAAGGGCAGCGAAGCGTCTCCCAGTGTTTCCTGGATAGTCCGGGGCAGTGGCTTCACTACCACGCGGGTGACTTTGTGGTAAAGAAATCAAACGGGCCAACGGTAGTGAAGTTCTCGATGATGCAGATAGATTGCACCCACACCAAAGGTGGTATATGTGTAGACTCTGTAGTGATTTACCCTAGTTCATTCAAGGAGAGACTGAAGCGTTTTTGAAGGGCTTGGTCATTCTCTAACTAGGTTTAGGAATCTCTATATTAGATGAGATGTAGATACTATATAGAGAGAAATAGAGAGAGTAAGTAAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGTAGCAGAGTGTCATGAGTTTTTTTTAGTCTTCAGGCTCTGTTATGTTATGTGTGTGGCTCATCGGCTGTAGTATGTAGAGTGAGCAGTTTATGGTGGAAATTGACAATTTAGGAAGTCATTTCCATCTCTGCTTTTGTTGTTTTAGCTTCATAGTTGGTATTTGAGGACAATAGATGCTTCGGTTGAAAAAAAACTAGCAACCTCTTGTTGTCCTTTATTTTCAATACAGTTCAGATACTCTGTGTTGTTTGGAAGGTTTTTTGAATTGGTTGATCTTTATTTTACTAAATTGTTTTTCGCAAGGCAAATTTTCTTGCTAACTTTTGTTAATGTACTGAATTGGAGACGGGGTATCCCTGAACTCTCATAGGGGG ATGGGTTCGGCGATTGGGAAGGAATCTGCAATCGGGTCAACCCGACAACCAAAGAAAACGGGTTTAGGGGATTTGCCTGAGAGCTGTGTTGCGACGGTGTTGATGAATTTGGACCCGAATGACATTTGCAGCTTGGCGAAATTGAACAAGGCTTTTCACGGAGCCTCATCTGCTGATTTTGTTTGGGAATCAAAATTACCCCCAAATTATAAGCAGATTATTGAGAAAATATCTGATGAAAACGATGATGATAATCTTCCTGTTTATTCGTGTAAAAAGGAGATTTATGCGAGTTTATCTCGATTTAATTCCATTGATGGCGGCTTAAAGAAGGTGTGGCTGGATAAGAACACAGGAGGGATCTGTATGGCGATATCTGCGAAGGGTTTATCAATAAATGGTATTGATGATCGAAGATATTGGAGCCACATTCCTACACAGGAATCTAGATTTCCATCAGTGGCTTATCTTCAACAGATCTGGTGGTTTGAGATCAACGGTGAAGTGGAGTTCCCATTCCCTGAAGGAACCTACAGTGTGTTCTTCAGGTTACAACTGGGCCGACCCGTGAAGAAGTTTGGGCGCCGAATTTGCAACACGGAGCAGATCCATGGGTGGAATGTCAAACCCGTACAATTCCAGCTTGCAACTTCAGAAGGGCAGCGAAGCGTCTCCCAGTGTTTCCTGGATAGTCCGGGGCAGTGGCTTCACTACCACGCGGGTGACTTTGTGGTAAAGAAATCAAACGGGCCAACGGTAGTGAAGTTCTCGATGATGCAGATAGATTGCACCCACACCAAAGGTGGTATATGTGTAGACTCTGTAGTGATTTACCCTAGTTCATTCAAGGAGAGACTGAAGCGTTTTTGA MGSAIGKESAIGSTRQPKKTGLGDLPESCVATVLMNLDPNDICSLAKLNKAFHGASSADFVWESKLPPNYKQIIEKISDENDDDNLPVYSCKKEIYASLSRFNSIDGGLKKVWLDKNTGGICMAISAKGLSINGIDDRRYWSHIPTQESRFPSVAYLQQIWWFEINGEVEFPFPEGTYSVFFRLQLGRPVKKFGRRICNTEQIHGWNVKPVQFQLATSEGQRSVSQCFLDSPGQWLHYHAGDFVVKKSNGPTVVKFSMMQIDCTHTKGGICVDSVVIYPSSFKERLKRF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00725.1 vs. NCBI nr
Match: gi|902170590|gb|KNA07862.1| (hypothetical protein SOVF_167880 [Spinacia oleracea]) HSP 1 Score: 612.1 bits (1577), Expect = 5.100e-172 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
BLAST of Spo00725.1 vs. NCBI nr
Match: gi|731331213|ref|XP_010676545.1| (PREDICTED: F-box protein PP2-A12-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 521.2 bits (1341), Expect = 1.200e-144 Identity = 241/290 (83.10%), Postives = 263/290 (90.69%), Query Frame = 1
BLAST of Spo00725.1 vs. NCBI nr
Match: gi|568847150|ref|XP_006477402.1| (PREDICTED: F-box protein PP2-A12-like [Citrus sinensis]) HSP 1 Score: 408.7 bits (1049), Expect = 8.600e-111 Identity = 184/271 (67.90%), Postives = 221/271 (81.55%), Query Frame = 1
BLAST of Spo00725.1 vs. NCBI nr
Match: gi|729297103|ref|XP_010545982.1| (PREDICTED: F-box protein PP2-A12-like [Tarenaya hassleriana]) HSP 1 Score: 407.9 bits (1047), Expect = 1.500e-110 Identity = 181/271 (66.79%), Postives = 216/271 (79.70%), Query Frame = 1
BLAST of Spo00725.1 vs. NCBI nr
Match: gi|567896112|ref|XP_006440544.1| (hypothetical protein CICLE_v10021489mg [Citrus clementina]) HSP 1 Score: 407.5 bits (1046), Expect = 1.900e-110 Identity = 183/271 (67.53%), Postives = 221/271 (81.55%), Query Frame = 1
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKU1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167880 PE=4 SV=1) HSP 1 Score: 612.1 bits (1577), Expect = 3.600e-172 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F8A3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g101050 PE=4 SV=1) HSP 1 Score: 521.2 bits (1341), Expect = 8.300e-145 Identity = 241/290 (83.10%), Postives = 263/290 (90.69%), Query Frame = 1
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Match: V4VLX1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021489mg PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.300e-110 Identity = 183/271 (67.53%), Postives = 221/271 (81.55%), Query Frame = 1
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Match: B9GKN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08810g PE=4 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 9.500e-109 Identity = 178/271 (65.68%), Postives = 218/271 (80.44%), Query Frame = 1
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Match: A0A0D2S3C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G208300 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 1.200e-108 Identity = 176/267 (65.92%), Postives = 216/267 (80.90%), Query Frame = 1
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 6.100e-109 Identity = 180/272 (66.18%), Postives = 215/272 (79.04%), Query Frame = 1
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1) HSP 1 Score: 392.9 bits (1008), Expect = 3.000e-108 Identity = 180/267 (67.42%), Postives = 216/267 (80.90%), Query Frame = 1
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 3.500e-96 Identity = 159/263 (60.46%), Postives = 200/263 (76.05%), Query Frame = 1
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 8.600e-87 Identity = 139/273 (50.92%), Postives = 197/273 (72.16%), Query Frame = 1
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.200e-80 Identity = 142/279 (50.90%), Postives = 189/279 (67.74%), Query Frame = 1
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Match: AT1G12710.1 (phloem protein 2-A12) HSP 1 Score: 395.2 bits (1014), Expect = 3.500e-110 Identity = 180/272 (66.18%), Postives = 215/272 (79.04%), Query Frame = 1
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Match: AT1G63090.1 (phloem protein 2-A11) HSP 1 Score: 392.9 bits (1008), Expect = 1.700e-109 Identity = 180/267 (67.42%), Postives = 216/267 (80.90%), Query Frame = 1
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Match: AT3G61060.2 (phloem protein 2-A13) HSP 1 Score: 348.2 bits (892), Expect = 4.900e-96 Identity = 159/264 (60.23%), Postives = 200/264 (75.76%), Query Frame = 1
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Match: AT5G52120.1 (phloem protein 2-A14) HSP 1 Score: 321.6 bits (823), Expect = 4.900e-88 Identity = 139/273 (50.92%), Postives = 197/273 (72.16%), Query Frame = 1
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Match: AT3G53000.1 (phloem protein 2-A15) HSP 1 Score: 301.2 bits (770), Expect = 6.800e-82 Identity = 142/279 (50.90%), Postives = 189/279 (67.74%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00725.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00725.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00725.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00725.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|