Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGATAGGTTGAGCATGCAACTCAACTACAACACAAATCAAAACACGTGCTTATAATATTACACACTCATTTGCATCTTATTTTCGGCATAAGAAATGGCTCAAGCAATCAAGGTATGTTTTTTTACTTTTTCATTAATATTATACTACGTATAAACTAATTTTTAATGAATTGGTGTTTGCAAAACATATTAAAATGTATAGAGGTCAATGTCATAAGCTTTTAAAATGTTAGACATGCATTTCCTCTAGCTTTCTATTATTGAAATACTCCACTTCGTACAATATTGTGATGTTGCTGCCGCGGTTTTCTAATTCTCTAACCGATAGAGATTAGAAACGGTATACTAATTAAGCATAAAATAGTAATTTTGGATGGTATACTAGGGTCTAAATGGTAACTTCAGGTAATAAATTGAGTTTGGCCCATGAAAAATAACATTTATCTTTGACTTATAGGTGCCAAACTATGTTGTTTGGTACGAAATAAAAATACAATCACGTTATCAAACTATGTTATTTGGTACCACATGAGAATATAAATGCAACTACTCTTTTTCTACCAAACTATAAACTATTACTACGTATTATATTATGAGTACAGCATTTCAAATCTCTACCGATTATAGAACAAGACTTCCTCGTTGCTGCCAACATTAAAGCTAGGAGATTGGGTTTGTTTAAAAAAAATGAGAGGAGAGAGAATGATCGAGAGATAGTATCAGAAGGGGTGTAAGTTTGTCTTTATTAAAACAAGGAAGAAAGACACGCATTTCTTTTATTTAACGTTTTACCATTAAATGTGGCGCACCAATCAAGAGTCGTTCGATGTGATTTATCTAACGGTTTGTAATTCTTCTCATTCTTCTCATTATAAGGATTTTCTCATTGGATGAGGACCCTATAAATATACTTCGTATATCTCTAACTATTTCATTTAAATGATTTAATTATCTTTTTTAAGGTACTTAATTAGGCCATACTAACTTTTTTGTGTTGAATTTCATAGAATCAAGAGGTTGAATACTATGGACCCTATGGTTCTAAATCCTCAGAAAACTATCGCATGCAACTTCGTGATGGAGAACAATTCAGAGAAGTTATAGTAAGACATGAGAGCATAGTAGACGCACTCGGGTTCGTGGTAGCTAAGCCAGATGGGACTACCGTCACTTACCAGTTTGGTGGCAACGGTGGTATTGAAAGCAAGGTTAGACTAACACGTACTAGTACATGTCTAATTCTTCATTCTTTTCGAGTAAACAATTTTCTTATAAGTCCTTTAACGTGTAATAATCCCCCATTTCTTTTTTCTTAAAATGCATATCTAAAGATTGTGCTCAAGACTGGCGAATACGTTACAGGGGTTAGTGGGATTAGTGGTTACTACCTATTGGTACTTGGTGTGTTGATTGCTGAGATAAAAATACACACCAATTTGAATCCGAATGGATACGGGCCATTTGGAAATAGAAACAAAGTTTCAAGTCAGGAGAAATTTTCATCGCCGGTCATAACTGATGGACGTGCTACTGTTGGATTTTTTGGAAGAAATGGATGGTATCTCGACTCTGTAGGAGTCATGATCCCAAAGGTAAGATGTATATGTGTAGTACTTACCAAATTCTTAAATTAGAAAAATTAACTACTCCCCTTCCCAGTCCCTTTTTATTCTTTACGTTTGGTATCATACACGCGATTTAACAACTAATTGACGTTAATAACGATTCATCCTTTTTTATTTTAAACAATGCAAAATTACGTTTATGATAATGTTTACACTTGTATCCAAAAATATGACATTGGGAAAATGTGAGAGGTTCATGTCTCAATAGAAAAGTGTGAAAGGTTTTAACGATTTTAATTAATTAAAATAATCACTTGCATGATTTTTGACAGAATATTAACGACATTAATGATACAATATAATTAAAGAAAAGATTCTAAATGTAAAGATTAAAACGAGACACTTGAAACTAAAAGGGTAAAGAATAAAAAGGGACATAGGAAGTAGAATTTTATCATGTGAGATTGTGAAAACATGAAAATTAGTCTGACATATCAAGTAAAATACAAACAATAGTACAATTAAAAATACATCCATACTATCTAAATATATATCACTAATATGGATTTTACCGGTTATCATATGTTGTTGTTTTAATTTTCGTAGATGCCAGAGATTGAAATCTACGGGCCTTATGGTTCTCAACTCCCAGAAAATTTTAAAGTGCAACTTGAATATGGAGACCGTTTCAAGGAAGTCACAGTAAAGTATGGGTCCATAGTAGACTCACTGGGCTTCGTGGTAACTAAGAAAGATGGGACCACCGTCCCTTACCAGTTTGGTGGTAACGGCTTCTATGCAGGCAAGGTTAGACTAACATGTAATACATGTTTAAATCTACAAAAAAAAAAATCTAGGTAAAAATATACTTACAATTCCTTAAACATGTACTTATTTCCTCCTTATTTCTTAATATGTATATCTAAAGGTGACACTGATGGATGGAGAATATTTAACAAGGATTAGTGGAATCTTTGGTAATGCACCTAAATACCTACCTGACAATAGTGTAGTAATTGGTACGATGACAATACACACCAATTTGAATCCGAATGGATACGGACCATTTGGAAAAGGTATAGATATTCAAAATGTTAGGAACTACTCATCGCCGACCATGACTGATGGCCCTATTGTTGGATTTCTTGGAAGGAGCGGCAAGTTTCTTGAGTCTGCAGGAGTTATGATCCGAAAGGTAAGATACTTATCAAAATAATACATAAATTTAATCAAGAGTCAACATTATTTCCCCGTTCTATAAACTAAAGTCGCATAGTTTCATTTTTGTTGTTAAGTTGACTTTAATAAAGGTTAATATGCTAAAGCTTTTTTGAACGCCAAATACAGGAATTCCCGTGAAACAAGGCAATGTAAGGCGATGTAAGTGCGTATGAATGCTTAAGTTATTATATGTATTTTCAAATAAGCCACATTAGTTTTTCCATAAACTATGAGTGAGTGGCCTCTCAAGAGTGATTGTAATCATAAGCTTGAGTGAATGTTGTATTGTACTAATTTTCTAGTTTCCCTTATGTATTGGCTTATCTATACCATATGATAATATGAAGTCTTTTTTCCCTTTTAAATATTG TAGATAGGTTGAGCATGCAACTCAACTACAACACAAATCAAAACACGTGCTTATAATATTACACACTCATTTGCATCTTATTTTCGGCATAAGAAATGGCTCAAGCAATCAAGAATCAAGAGGTTGAATACTATGGACCCTATGGTTCTAAATCCTCAGAAAACTATCGCATGCAACTTCGTGATGGAGAACAATTCAGAGAAGTTATAGTAAGACATGAGAGCATAGTAGACGCACTCGGGTTCGTGGTAGCTAAGCCAGATGGGACTACCGTCACTTACCAGTTTGGTGGCAACGGTGGTATTGAAAGCAAGATTGTGCTCAAGACTGGCGAATACGTTACAGGGGTTAGTGGGATTAGTGGTTACTACCTATTGGTACTTGGTGTGTTGATTGCTGAGATAAAAATACACACCAATTTGAATCCGAATGGATACGGGCCATTTGGAAATAGAAACAAAGTTTCAAGTCAGGAGAAATTTTCATCGCCGGTCATAACTGATGGACGTGCTACTGTTGGATTTTTTGGAAGAAATGGATGGTATCTCGACTCTGTAGGAGTCATGATCCCAAAGATGCCAGAGATTGAAATCTACGGGCCTTATGGTTCTCAACTCCCAGAAAATTTTAAAGTGCAACTTGAATATGGAGACCGTTTCAAGGAAGTCACAGTAAAGTATGGGTCCATAGTAGACTCACTGGGCTTCGTGGTAACTAAGAAAGATGGGACCACCGTCCCTTACCAGTTTGGTGGTAACGGCTTCTATGCAGGCAAGGTGACACTGATGGATGGAGAATATTTAACAAGGATTAGTGGAATCTTTGGTAATGCACCTAAATACCTACCTGACAATAGTGTAGTAATTGGTACGATGACAATACACACCAATTTGAATCCGAATGGATACGGACCATTTGGAAAAGGTATAGATATTCAAAATGTTAGGAACTACTCATCGCCGACCATGACTGATGGCCCTATTGTTGGATTTCTTGGAAGGAGCGGCAAGTTTCTTGAGTCTGCAGGAGTTATGATCCGAAAGGAATTCCCGTGAAACAAGGCAATGTAAGGCGATGTAAGTGCGTATGAATGCTTAAGTTATTATATGTATTTTCAAATAAGCCACATTAGTTTTTCCATAAACTATGAGTGAGTGGCCTCTCAAGAGTGATTGTAATCATAAGCTTGAGTGAATGTTGTATTGTACTAATTTTCTAGTTTCCCTTATGTATTGGCTTATCTATACCATATGATAATATGAAGTCTTTTTTCCCTTTTAAATATTG ATGGCTCAAGCAATCAAGAATCAAGAGGTTGAATACTATGGACCCTATGGTTCTAAATCCTCAGAAAACTATCGCATGCAACTTCGTGATGGAGAACAATTCAGAGAAGTTATAGTAAGACATGAGAGCATAGTAGACGCACTCGGGTTCGTGGTAGCTAAGCCAGATGGGACTACCGTCACTTACCAGTTTGGTGGCAACGGTGGTATTGAAAGCAAGATTGTGCTCAAGACTGGCGAATACGTTACAGGGGTTAGTGGGATTAGTGGTTACTACCTATTGGTACTTGGTGTGTTGATTGCTGAGATAAAAATACACACCAATTTGAATCCGAATGGATACGGGCCATTTGGAAATAGAAACAAAGTTTCAAGTCAGGAGAAATTTTCATCGCCGGTCATAACTGATGGACGTGCTACTGTTGGATTTTTTGGAAGAAATGGATGGTATCTCGACTCTGTAGGAGTCATGATCCCAAAGATGCCAGAGATTGAAATCTACGGGCCTTATGGTTCTCAACTCCCAGAAAATTTTAAAGTGCAACTTGAATATGGAGACCGTTTCAAGGAAGTCACAGTAAAGTATGGGTCCATAGTAGACTCACTGGGCTTCGTGGTAACTAAGAAAGATGGGACCACCGTCCCTTACCAGTTTGGTGGTAACGGCTTCTATGCAGGCAAGGTGACACTGATGGATGGAGAATATTTAACAAGGATTAGTGGAATCTTTGGTAATGCACCTAAATACCTACCTGACAATAGTGTAGTAATTGGTACGATGACAATACACACCAATTTGAATCCGAATGGATACGGACCATTTGGAAAAGGTATAGATATTCAAAATGTTAGGAACTACTCATCGCCGACCATGACTGATGGCCCTATTGTTGGATTTCTTGGAAGGAGCGGCAAGTTTCTTGAGTCTGCAGGAGTTATGATCCGAAAGGAATTCCCGTGA MAQAIKNQEVEYYGPYGSKSSENYRMQLRDGEQFREVIVRHESIVDALGFVVAKPDGTTVTYQFGGNGGIESKIVLKTGEYVTGVSGISGYYLLVLGVLIAEIKIHTNLNPNGYGPFGNRNKVSSQEKFSSPVITDGRATVGFFGRNGWYLDSVGVMIPKMPEIEIYGPYGSQLPENFKVQLEYGDRFKEVTVKYGSIVDSLGFVVTKKDGTTVPYQFGGNGFYAGKVTLMDGEYLTRISGIFGNAPKYLPDNSVVIGTMTIHTNLNPNGYGPFGKGIDIQNVRNYSSPTMTDGPIVGFLGRSGKFLESAGVMIRKEFP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00728.1 vs. NCBI nr
Match: gi|902197517|gb|KNA13444.1| (hypothetical protein SOVF_116660 [Spinacia oleracea]) HSP 1 Score: 656.4 bits (1692), Expect = 2.600e-185 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
BLAST of Spo00728.1 vs. NCBI nr
Match: gi|902116757|gb|KNA03916.1| (hypothetical protein SOVF_204650 [Spinacia oleracea]) HSP 1 Score: 422.2 bits (1084), Expect = 8.300e-115 Identity = 210/321 (65.42%), Postives = 247/321 (76.95%), Query Frame = 1
BLAST of Spo00728.1 vs. NCBI nr
Match: gi|902204590|gb|KNA14922.1| (hypothetical protein SOVF_102940 [Spinacia oleracea]) HSP 1 Score: 350.9 bits (899), Expect = 2.300e-93 Identity = 171/235 (72.77%), Postives = 191/235 (81.28%), Query Frame = 1
BLAST of Spo00728.1 vs. NCBI nr
Match: gi|731329754|ref|XP_010675763.1| (PREDICTED: uncharacterized protein LOC104891724 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 293.5 bits (750), Expect = 4.400e-76 Identity = 154/316 (48.73%), Postives = 202/316 (63.92%), Query Frame = 1
BLAST of Spo00728.1 vs. NCBI nr
Match: gi|731329752|ref|XP_010675762.1| (PREDICTED: uncharacterized protein LOC104891724 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 293.5 bits (750), Expect = 4.400e-76 Identity = 154/316 (48.73%), Postives = 202/316 (63.92%), Query Frame = 1
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3C7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116660 PE=4 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 1.800e-185 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBJ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_204650 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 5.800e-115 Identity = 210/321 (65.42%), Postives = 247/321 (76.95%), Query Frame = 1
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7Z8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102940 PE=4 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 1.600e-93 Identity = 171/235 (72.77%), Postives = 191/235 (81.28%), Query Frame = 1
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CG81_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088840 PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 3.100e-76 Identity = 154/316 (48.73%), Postives = 202/316 (63.92%), Query Frame = 1
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CL65_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088880 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.800e-68 Identity = 148/315 (46.98%), Postives = 202/315 (64.13%), Query Frame = 1
BLAST of Spo00728.1 vs. ExPASy Swiss-Prot
Match: LEC_PARPC (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 7.000e-21 Identity = 97/319 (30.41%), Postives = 153/319 (47.96%), Query Frame = 1
BLAST of Spo00728.1 vs. ExPASy Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 8.500e-11 Identity = 77/271 (28.41%), Postives = 117/271 (43.17%), Query Frame = 1
BLAST of Spo00728.1 vs. ExPASy Swiss-Prot
Match: JAL3_ARATH (Jacalin-related lectin 3 OS=Arabidopsis thaliana GN=JAL3 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.100e-9 Identity = 57/210 (27.14%), Postives = 95/210 (45.24%), Query Frame = 1
BLAST of Spo00728.1 vs. TAIR (Arabidopsis)
Match: AT1G19715.3 (Mannose-binding lectin superfamily protein) HSP 1 Score: 64.7 bits (156), Expect = 1.200e-10 Identity = 57/210 (27.14%), Postives = 95/210 (45.24%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00728.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00728.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00728.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo00728.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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