Spo00746 (gene)

Overview
NameSpo00746
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionWound-responsive family protein, putative
Locationchr4 : 77494704 .. 77494967 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATCAGTAAGAAGCAGAGCATGGATAGTAATGGCAGCAGTTGAAGGGATGAAAGATCAAGGATTTGCAAGGTGGAATTATACAATAAGATCTCTTCAACAACATGTTAAGAATAACGTTAGATCTTATTCTCAGGCCAAAAGTGTTTCGGGGTCATCATCTTCTGTAATTACGCAGAAAATTAGAGACGAAAAATTGAAACAATCTGAGGAATCTCTTAGGAAAGTCATGTACTTAAGTTGTTGGGGTCCTAATTAG

mRNA sequence

ATGAGTTCATCAGTAAGAAGCAGAGCATGGATAGTAATGGCAGCAGTTGAAGGGATGAAAGATCAAGGATTTGCAAGGTGGAATTATACAATAAGATCTCTTCAACAACATGTTAAGAATAACGTTAGATCTTATTCTCAGGCCAAAAGTGTTTCGGGGTCATCATCTTCTGTAATTACGCAGAAAATTAGAGACGAAAAATTGAAACAATCTGAGGAATCTCTTAGGAAAGTCATGTACTTAAGTTGTTGGGGTCCTAATTAG

Coding sequence (CDS)

ATGAGTTCATCAGTAAGAAGCAGAGCATGGATAGTAATGGCAGCAGTTGAAGGGATGAAAGATCAAGGATTTGCAAGGTGGAATTATACAATAAGATCTCTTCAACAACATGTTAAGAATAACGTTAGATCTTATTCTCAGGCCAAAAGTGTTTCGGGGTCATCATCTTCTGTAATTACGCAGAAAATTAGAGACGAAAAATTGAAACAATCTGAGGAATCTCTTAGGAAAGTCATGTACTTAAGTTGTTGGGGTCCTAATTAG

Protein sequence

MSSSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQKIRDEKLKQSEESLRKVMYLSCWGPN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00746.1Spo00746.1mRNA


Homology
[Close]
BLAST of Spo00746.1 vs. NCBI nr
Match: gi|731365287|ref|XP_010694442.1| (PREDICTED: uncharacterized protein LOC104907244 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.8 bits (395), Expect = 1.800e-35
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS RSRAWIVMAAVEGMKDQG+ARWNYT+RSL QHVKNNVRSYSQAK +SGSSSSVI+QK
Sbjct: 2  SSARSRAWIVMAAVEGMKDQGYARWNYTLRSLHQHVKNNVRSYSQAKKLSGSSSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RDEKLKQSEESLRKVMYLSCWGPN
Sbjct: 62 FRDEKLKQSEESLRKVMYLSCWGPN 86
[Close]
BLAST of Spo00746.1 vs. NCBI nr
Match: gi|731365289|ref|XP_010694444.1| (PREDICTED: uncharacterized protein LOC104907245 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 1.500e-34
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS RSRAWIVMAAVEGMKDQG+ARWNYT+RSL QHVKNNVRSYSQAK +S SSSSVI+QK
Sbjct: 2  SSARSRAWIVMAAVEGMKDQGYARWNYTLRSLHQHVKNNVRSYSQAKKLSWSSSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RDEKLKQSEESLRKVMYLSCWGPN
Sbjct: 62 FRDEKLKQSEESLRKVMYLSCWGPN 86
[Close]
BLAST of Spo00746.1 vs. NCBI nr
Match: gi|731365293|ref|XP_010694446.1| (PREDICTED: uncharacterized protein LOC104907247 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 140.2 bits (352), Expect = 1.700e-30
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SSV+SRAWIVMAA+EGMKDQGFARWNYTIRSLQ H KNNVRSYSQAK++SGS+SSVI+QK
Sbjct: 2  SSVKSRAWIVMAAIEGMKDQGFARWNYTIRSLQNHAKNNVRSYSQAKNLSGSTSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
          + D     SEESLRKVMYLSCWGPN
Sbjct: 62 LND-----SEESLRKVMYLSCWGPN 81
[Close]
BLAST of Spo00746.1 vs. NCBI nr
Match: gi|902111831|gb|KNA03778.1| (hypothetical protein SOVF_205880 [Spinacia oleracea])

HSP 1 Score: 139.8 bits (351), Expect = 2.200e-30
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS +SRAW+++AAV+GMKDQGF RWNYTI+SL QHVKN VRSYSQAK +SGSSS  I+QK
Sbjct: 2  SSAKSRAWMIVAAVQGMKDQGFTRWNYTIKSLNQHVKNKVRSYSQAKLISGSSS--ISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
          IRDEKLKQSEES+RKV+YLSCWGPN
Sbjct: 62 IRDEKLKQSEESIRKVIYLSCWGPN 84
[Close]
BLAST of Spo00746.1 vs. NCBI nr
Match: gi|902237905|gb|KNA24974.1| (hypothetical protein SOVF_010750 [Spinacia oleracea])

HSP 1 Score: 136.7 bits (343), Expect = 1.900e-29
Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SSV+SRAWI++AAVEG+KDQG+A+WN+ I+S+ QHVKNN+RSYSQAK +SGSSSSVI+Q 
Sbjct: 2  SSVKSRAWIIVAAVEGIKDQGYAKWNHAIKSVNQHVKNNIRSYSQAKMLSGSSSSVISQN 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RD+KL++SEESL+KVMYL+CWGP+
Sbjct: 62 FRDDKLRESEESLKKVMYLNCWGPS 86
[Close]
BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBT0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093270 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.200e-35
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS RSRAWIVMAAVEGMKDQG+ARWNYT+RSL QHVKNNVRSYSQAK +SGSSSSVI+QK
Sbjct: 2  SSARSRAWIVMAAVEGMKDQGYARWNYTLRSLHQHVKNNVRSYSQAKKLSGSSSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RDEKLKQSEESLRKVMYLSCWGPN
Sbjct: 62 FRDEKLKQSEESLRKVMYLSCWGPN 86
[Close]
BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEI3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093280 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.000e-34
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS RSRAWIVMAAVEGMKDQG+ARWNYT+RSL QHVKNNVRSYSQAK +S SSSSVI+QK
Sbjct: 2  SSARSRAWIVMAAVEGMKDQGYARWNYTLRSLHQHVKNNVRSYSQAKKLSWSSSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RDEKLKQSEESLRKVMYLSCWGPN
Sbjct: 62 FRDEKLKQSEESLRKVMYLSCWGPN 86
[Close]
BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BE85_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093290 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.200e-30
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SSV+SRAWIVMAA+EGMKDQGFARWNYTIRSLQ H KNNVRSYSQAK++SGS+SSVI+QK
Sbjct: 2  SSVKSRAWIVMAAIEGMKDQGFARWNYTIRSLQNHAKNNVRSYSQAKNLSGSTSSVISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
          + D     SEESLRKVMYLSCWGPN
Sbjct: 62 LND-----SEESLRKVMYLSCWGPN 81
[Close]
BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAR0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205880 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.600e-30
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SS +SRAW+++AAV+GMKDQGF RWNYTI+SL QHVKN VRSYSQAK +SGSSS  I+QK
Sbjct: 2  SSAKSRAWMIVAAVQGMKDQGFTRWNYTIKSLNQHVKNKVRSYSQAKLISGSSS--ISQK 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
          IRDEKLKQSEES+RKV+YLSCWGPN
Sbjct: 62 IRDEKLKQSEESIRKVIYLSCWGPN 84
[Close]
BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1B2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010750 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.300e-29
Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 1 

		  

Query: 3  SSVRSRAWIVMAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 62
          SSV+SRAWI++AAVEG+KDQG+A+WN+ I+S+ QHVKNN+RSYSQAK +SGSSSSVI+Q 
Sbjct: 2  SSVKSRAWIIVAAVEGIKDQGYAKWNHAIKSVNQHVKNNIRSYSQAKMLSGSSSSVISQN 61

Query: 63 IRDEKLKQSEESLRKVMYLSCWGPN 88
           RD+KL++SEESL+KVMYL+CWGP+
Sbjct: 62 FRDDKLRESEESLKKVMYLNCWGPS 86
[Close]
BLAST of Spo00746.1 vs. TAIR (Arabidopsis)
Match: AT4G10270.1 (Wound-responsive family protein)

HSP 1 Score: 93.2 bits (230), Expect = 8.500e-20
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 1 

		  

Query: 4  SVRSRAWIV---MAAVEGMKDQ-GFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSS-SSV 63
          S  S+AW V   + AVE +KDQ G  RWNY +RS+ QH++NNVRS SQ K  S SS S+ 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 ITQKIRDEKLKQSEESLRKVMYLSCWGPN 88
          +T     EK K++EESLR VMYLSCWGPN
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90
[Close]
BLAST of Spo00746.1 vs. TAIR (Arabidopsis)
Match: AT4G10265.1 (Wound-responsive family protein)

HSP 1 Score: 83.6 bits (205), Expect = 6.700e-17
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1 

		  

Query: 4  SVRSRAWIVMA---AVEGMKDQ-GFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVI 63
          S  S+ W+V A   AVE +KDQ G  RWNY IRS  Q+++NN+RS SQAK +S SS    
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY- 61

Query: 64 TQKIRDEKLKQSEESLRKVMYLSCWGPN 88
                 K KQ+EESLR VMYLSCWGP+
Sbjct: 62 -----TNKTKQAEESLRTVMYLSCWGPS 83
[Close]
BLAST of Spo00746.1 vs. TAIR (Arabidopsis)
Match: AT4G33560.1 (Wound-responsive family protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-7
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 1 

		  

Query: 6  RSRAWIV---MAAVEGMKDQGFARWNYTIRSLQQHVKNNVRSYSQAKSVSGSSSSVITQK 65
          +  +W V   +AAVE +KDQG ARWNY  R L +     VR+ +     S  +SS     
Sbjct: 5  KQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATS 64

Query: 66 IRDEKLKQS--EESLRKVMYLSCWGP 87
          IR + L  +  E S  K M LSC+GP
Sbjct: 65 IRSKPLSTTPFETSFEKAMGLSCFGP 90
The following BLAST results are available for this feature:
BLAST of Spo00746.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731365287|ref|XP_010694442.1|1.8e-3590.5PREDICTED: uncharacterized pro... [more]
gi|731365289|ref|XP_010694444.1|1.5e-3489.4PREDICTED: uncharacterized pro... [more]
gi|731365293|ref|XP_010694446.1|1.7e-3082.3PREDICTED: uncharacterized pro... [more]
gi|902111831|gb|KNA03778.1|2.2e-3080.0hypothetical protein SOVF_2058... [more]
gi|902237905|gb|KNA24974.1|1.9e-2972.9hypothetical protein SOVF_0107... [more]
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BLAST of Spo00746.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BBT0_BETVU1.2e-3590.5Uncharacterized protein OS=Bet... [more]
A0A0J8BEI3_BETVU1.0e-3489.4Uncharacterized protein OS=Bet... [more]
A0A0J8BE85_BETVU1.2e-3082.3Uncharacterized protein OS=Bet... [more]
A0A0K9QAR0_SPIOL1.6e-3080.0Uncharacterized protein OS=Spi... [more]
A0A0K9S1B2_SPIOL1.3e-2972.9Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00746.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00746.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G10270.18.5e-2057.3Wound-responsive family protei... [more]
AT4G10265.16.7e-1754.5Wound-responsive family protei... [more]
AT4G33560.12.2e-739.5Wound-responsive family protei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 13..86
score: 1.3
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 4..87
score: 2.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045227 capsule polysaccharide biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0006012 galactose metabolic process
biological_process GO:0033358 UDP-L-arabinose biosynthetic process
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0050373 UDP-arabinose 4-epimerase activity
molecular_function GO:0003978 UDP-glucose 4-epimerase activity
RNA-Seq Expression