Spo00754 (gene)

Overview
NameSpo00754
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01430 : 75027 .. 76445 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTTCCGACACCTCTATCCATACTTTGACAGTGAGCTTGTGCCCTATCTCTATACACACGTGGCTGGCAAAAGTATATCTCCTTTTTCCTCCAAAACAATCCACTGCTTCACCATCATCATCATCATATTCTCATTTATCATCAAAACCATCAATCCACCACCAAGTCCATACGGGAATTTGTTTCAATTCAACCAAAACCATAGCCTCCAAAATTAATTTGCTTCAAATAAACGAATACTACCCACAATGAATAATTAATGGTTGAAGCATAAATCAAAAGTTTTGGAAACAACAAGAAAAAATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATGTAATTATTCTCTCTCCGTTTTCTAGTTTAATGTTTTAATTGGGTTTTTAATTGTGCGTAATTTGTGTTTAATTTATCTTTATTGGACTTCCATTTTATAAAAATAAAAAAATTGATTCATGAGTAGGAATTGGCAGTTTGACACTTTGTTTCAGTTTGGTAAATTGTGTTATTTGATTTAATTAATTAGGGGTTGTTTGGGAGGGTTTCTAAACCTCAACACAAGTGATCCAAATACAATCATCTTGAGTATCAACACATAATATGTCAGTACCAAAATGCAAAATTGCTTAGAAATACCACCAATATAAGTCATATGTGTTATTATTGGTATTCACATAATTTGTATTGATACTAACATATTCTGTATTGGTACTCCAAATTCTGTATTGGTACTCACTTGTGTCCAATATGGACACAAGTCACTTGTGACAAAGACTTCCTCGGTTGTTTGGTGAAGCTGTTGAAGAATATTAAATATCTGGTGGTTGATTTGTCTTGCTATTATTTGGAAAGAATAAAACTATTTTGGTTGGATTTGTTTTATTTCAAGTAATTGTGATGCAAGAGAGAGCCGCTGATCAAATGCACACGAAACCGGGGAATTAGCTATTACGGAGTACCATTTGTCAAATGTGCATGAAAAATTGACAGATTCAGCAGTTTTGGCATCCAAATGTATCATATCAGATACTTAGGCCATAATGATGTTTGACAACTAGTTATTAAGTAGAAGATAGCATAGTAGATTAGCAGACTTTAATGGCGAAATGGCAAATGGGTTCGTAGGTTTGTAGGGAGTAAGTAGACTATGTAAAGTTAAGGTATTTGATAAATTAGCAAGCGCATTGGCTTTTACATTTGATTTCAGAAACTGAAATGCTGGCTGCCGGTAGGAAGAGCCTTAGGAAATTAGCAGACTGGGACAAATATGCTCTCCTTGAAGCACATCCATTGGCATGTTTCAGGTGGTCAAACATATGA

mRNA sequence

CAGCTTCCGACACCTCTATCCATACTTTGACAGTGAGCTTGTGCCCTATCTCTATACACACGTGGCTGGCAAAAGTATATCTCCTTTTTCCTCCAAAACAATCCACTGCTTCACCATCATCATCATCATATTCTCATTTATCATCAAAACCATCAATCCACCACCAAGTCCATACGGGAATTTGTTTCAATTCAACCAAAACCATAGCCTCCAAAATTAATTTGCTTCAAATAAACGAATACTACCCACAATGAATAATTAATGGTTGAAGCATAAATCAAAAGTTTTGGAAACAACAAGAAAAAATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATAAACTGAAATGCTGGCTGCCGGTAGGAAGAGCCTTAGGAAATTAGCAGACTGGGACAAATATGCTCTCCTTGAAGCACATCCATTGGCATGTTTCAGGTGGTCAAACATATGA

Coding sequence (CDS)

ATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATAA

Protein sequence

MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00754.1Spo00754.1mRNA


Homology
[Close]
BLAST of Spo00754.1 vs. NCBI nr
Match: gi|902222544|gb|KNA19203.1| (hypothetical protein SOVF_063890 [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 44
          MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Sbjct: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 43
[Close]
BLAST of Spo00754.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063890 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 44
          MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Sbjct: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 43
The following BLAST results are available for this feature:
BLAST of Spo00754.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902222544|gb|KNA19203.1|3.6e-13100.hypothetical protein SOVF_0638... [more]
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BLAST of Spo00754.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RI82_SPIOL2.5e-13100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00754.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00754.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo150920.84Barchart | Table
Spo217160.82Barchart | Table
Spo163920.81Barchart | Table
Spo005380.81Barchart | Table
Spo113360.80Barchart | Table
Spo030060.79Barchart | Table
Spo152440.79Barchart | Table
Spo238740.78Barchart | Table
Spo094600.78Barchart | Table
Spo108170.76Barchart | Table
Spo043870.76Barchart | Table
Spo255030.75Barchart | Table
Spo153430.75Barchart | Table
Spo065080.75Barchart | Table
Spo230670.75Barchart | Table
Spo011830.74Barchart | Table
Spo058100.74Barchart | Table
Spo019670.74Barchart | Table
Spo123790.74Barchart | Table
Spo116820.74Barchart | Table
Spo194070.73Barchart | Table
Spo134280.73Barchart | Table
Spo049590.73Barchart | Table
Spo156080.73Barchart | Table
Spo187840.73Barchart | Table
Spo251750.73Barchart | Table
Spo043710.72Barchart | Table
Spo108200.72Barchart | Table
Spo247710.72Barchart | Table
Spo259950.72Barchart | Table
Spo269070.71Barchart | Table
Spo164360.71Barchart | Table
Spo239210.71Barchart | Table
Spo084970.71Barchart | Table
Spo272360.71Barchart | Table
Spo093210.71Barchart | Table
Spo193050.70Barchart | Table
Spo012240.70Barchart | Table
Spo020490.70Barchart | Table
Spo070200.70Barchart | Table
Spo206050.70Barchart | Table
Spo103000.69Barchart | Table
Spo057080.69Barchart | Table
Spo244160.69Barchart | Table
Spo067110.68Barchart | Table
Spo182200.68Barchart | Table
Spo165590.67Barchart | Table
Spo047890.67Barchart | Table
Spo212430.67Barchart | Table
Spo113330.67Barchart | Table
Spo119950.67Barchart | Table
Spo108630.67Barchart | Table
Spo181430.67Barchart | Table
Spo032130.66Barchart | Table
Spo049700.66Barchart | Table
Spo242030.66Barchart | Table
Spo256550.66Barchart | Table
Spo075490.66Barchart | Table
Spo059350.66Barchart | Table
Spo124830.66Barchart | Table
Spo060450.66Barchart | Table
Spo116290.66Barchart | Table
Spo046830.66Barchart | Table
Spo040370.66Barchart | Table