Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFSLIFKH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00782.1 vs. NCBI nr
Match: gi|902189520|gb|KNA11392.1| (hypothetical protein SOVF_135650 [Spinacia oleracea]) HSP 1 Score: 114.4 bits (285), Expect = 7.500e-23 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864280|gb|KMT15400.1| (hypothetical protein BVRB_3g061040 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 103.6 bits (257), Expect = 1.300e-19 Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1
BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864283|gb|KMT15403.1| (hypothetical protein BVRB_3g061070 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 101.3 bits (251), Expect = 6.600e-19 Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1
BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864281|gb|KMT15401.1| (hypothetical protein BVRB_3g061050 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 94.7 bits (234), Expect = 6.200e-17 Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1
BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864282|gb|KMT15402.1| (hypothetical protein BVRB_3g061060 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 94.4 bits (233), Expect = 8.100e-17 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVT2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135650 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 5.200e-23 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNR9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061040 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 9.300e-20 Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061070 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 4.600e-19 Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FHL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061050 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 4.300e-17 Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061060 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 5.600e-17 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00782.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00782.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo00782.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|