Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGATGAACACACTTTATTTAAGGGAGCACAATCGAGTTTGGGAACGTAACTTAACTTCTCCGATCTCCAATTCTCCATACTTGCTTATATATTTTGTCTGGAACAAGAACCTGAAATTTTGGCCAGAATTAATGGAAAAAAAAAAGGTAGGAAGAGGGATAAAACAAGAGCGTAGTTTTTAGGAAATACGGAATAGCAGATTTCAGAAGCATAAGAAAAAATTAATGATAAAGCTCACACGTGAGAAATTATTACCTTTCCTTTATTAAGTTTTGGTCCACAATAAACTAGTGCGGACCGGGTTTATTTAAGAGTTTTACGAGTTCCGGAACGTAACTCCAATTCTCCCGTCTCCAATTCTCCATACTTGCTTATATATTTTGTCTGGAACAAGAACAACCGCTTAAATCAAAAGCTCCCTTCCTCCTTTGCCAATTGACCCGCACAAAACGCAGAAATTCGTGGATAAATTATTTATCCATTCAAAGGTAAATATTTCTTCGTTGATTTTAAGTTTTTTTTTTTTATCTACGATTTTAATTTCAATGTCCTGCTATTCACAGTTTCAATCACCAATTTGATTAATACCCAAAACCCAATTTGAAATTCAGTTATTAATGTTTGAAATTGATCTGATGTTTATGGTTTCTTCAGTTTGATATTTTTTTTCTGAATAAAAAGAGCTATCTTTGTGTTTAATCGTGAGGGGATTTCGTCTGATTTATTTGAATTGTCAAGTTTTCTGGGTGAGATATTTTGTTAATTAATTTGGCGTTGACTGAATTTTTGAGCCTATGCCGACACTTGCAGAAGCGGTGGTTTGTTAGTTTGATCTGATTTCTTTGCGTCGGTATAATCCCAAAGAGCACACAATCGAGATGATGCACTTTAAAAGTGTTGCTAGAGCCTAATTAACCACACAACCCAAAGCGTTTCCTACAATTAACCTATCGTTATTGTTCGAAATAATGGATTCTAATAAAATTAAATAGAAAGATCCGACCTTTTAGTGATAGCCTGATAGGGACAACGGGTAGTTCAATTTTTTTGTATAGCAATCAGGTTTACAGGCTGTTAGCCTGGCTGGCTGTTCTGTCTGCTTGCCGTTGGGACACCGGTAAGAATTAGGTTGTAAATGGTTCTGGTCACCGTTCACTAGTATGAGATTGGGTACGGGTTCGCAATTCGCTACCTAATTTGCCGAATTAGACCAAAATTGTACCAATTTCATGTTGTAATTCGCTTTTTCGGTTCGTGGAGTGATTGGAGGATCAGGTAACACTGGTTCTGGTCGTTGAATATAATATCAGAATATCTCAACTTCTCAAGCCTGCTGACTAAGAATACAAAGAAAAAACTGAACAATATCCTCATTGTCACTCTGTTTTCCAGTCATTTCCATCTCTCAAACTTAACTTAAAGAACAAGCCTAGTAGATTTAAATCAAAATTAAGTTCAAGAAATCATCCTCATATCATAATTACCTCCTATTACTGTATCAGAATTATTACTATTAGTCCTAGTTGTTGTAGCAGACGTATAGGAGCTAGAGGAAATCATCTTCAGATCATAATTTTCCTAGTCGTGGCTAGTTATCTTTTGGACAACGTTTAAAAGGAAGAACTGGATTCTTGTCTGTTTATTATTTGAGATATTCAAGTGGTAGTGTAAATGTTTCATGTTTGTATGGAAAAAGTCGGGACTTATAACAGACATATCCACATAAGTGACATAACTAATTATTTATTGTATTTATTTTTGTGAATTTCAGTTGGCTGACATGAAGATGAACAACCAAGCTTCCAAATCTCATCGCATGAAAAATGATTTTTATATAATAGATGATCTCCTGCTGCAAATTTTGTTCCGACTACCATGCTCAGAATCAGTTATCAGGTGTAAGTGCGTCAGCAAGCAGTGGTGTAAGGTAATATCTGAACCTGGATTTGATGCTGAATTTATTGCTCATAAAATCAATAACAGTCAATTGTCCTCATCGAAAAATGAAGAACAACTTCCCTCTATATTTGGGCTTCGGCGATACAATAAAAAGCCCTTTATTTATCCCACCCATCCGACCTTTACAAATCTTGACTTTTCGCTAAGTTTTATTCCAACTTATGAACAAGGACCTGAATACCGTATCGTTGTGAAAGCATCGTGTAGTGATCTCGTTGTATGCATCAGTCCCTCACCAAAAGATCTTTATCTGTATGTTTGCAATCCTCGCACCAAGCAATATTTTCAACTGCCTCCACCATCTCAAAAGAAACATCCTGCTTTGATTGGTTTTACTTGTGATCCTTTTTATGTGTTTGATAAAGAAGCTGACCAAGTTACACTTAGTACTTGTTTTCGATTCAGCGTCTGTTATGCTTTCTTTGCTAGAGCAAAAGCGGATAGACTGGAAATCGAAATTTTCTCATCTGAAAACAGAGTTTGGAGGAAAGCAATCTTATTGACACCACAGTATTTTGATTATAATTATGCTACGTTAAAAAACTGCTTTACGTACAAGGAGATATTGCATTTTTACAGTGACTGTGCCATTATCGGTTTTGATCCTTACAAGATCAATGAGGATGGTGAAATCCATACCCATTTCATTCAGATGCCCCCATTTGACGCCACTGCAAACCGCGGTGTGTGCATTGGAGTTTTTGGAGGGAAAATACTTGTTGCAGAATTATGTGCACGCTACGTACATCCAAGACAATTGATCAATACAGCACAGGTTAGTAATATCAGTATTATTGAACCAGCAAGTAGTGCGTATGGCATAAAGGTTTGGGAGCTTAACAACTATAGCACTGGTGAATGGTCCATGAAGCATATGATTTATTTTCATGAATTGGTTTCACCAGACTCTCTCCTCACTCAATATACTATGCGAGGATGTCCCAACTCGGAGGTTCTATTTTTCCATCCAAACGATGCTGATACTGTGTTGTTGAGGCTTCCGAAACTAGTTGCTGAATGTAACTTGAAGGATAAAACGATAAAACGAGTTTGTAACTTTAGTAAACAACTTCAGAAGGTATATGGTGTTGCTTTCCCGTGGTGGCCGTCACCACTTCCGTCAATTATGTAGTGGAGTACTACGTATTACAACATTGGCACACGGTTTAAGGAAGAGAATAGAGAAGATATACATTTTATTGTTCTCTTTGGTGCCAATGGAAGCACGCAAGTTATTGTTTGTTTTTCTGTTTATGGTGTTAATGTTGAATTCCTGAATCAACCTTTTATTACTACGTACTTATATTAGGTATTAACAAGCCCTTTTATGGCTCATCGTGTCGATGGTGTTTATGGTCTTCTTCTCCTTGGCTCTTTTTAGGTTCTGTTGTGCATGTATAATTTTGGTACTTACCAC AGGATGAACACACTTTATTTAAGGGAGCACAATCGAGTTTGGGAACGTAACTTAACTTCTCCGATCTCCAATTCTCCATACTTGCTTATATATTTTGTCTGGAACAAGAACCTGAAATTTTGGCCAGAATTAATGGAAAAAAAAAAGGTAGGAAGAGGGATAAAACAAGAGCGTAGTTTTTAGGAAATACGGAATAGCAGATTTCAGAAGCATAAGAAAAAATTAATGATAAAGCTCACACGTGAGAAATTATTACCTTTCCTTTATTAAGTTTTGGTCCACAATAAACTAGTGCGGACCGGGTTTATTTAAGAGTTTTACGAGTTCCGGAACGTAACTCCAATTCTCCCGTCTCCAATTCTCCATACTTGCTTATATATTTTGTCTGGAACAAGAACAACCGCTTAAATCAAAAGCTCCCTTCCTCCTTTGCCAATTGACCCGCACAAAACGCAGAAATTCGTGGATAAATTATTTATCCATTCAAAGTTGGCTGACATGAAGATGAACAACCAAGCTTCCAAATCTCATCGCATGAAAAATGATTTTTATATAATAGATGATCTCCTGCTGCAAATTTTGTTCCGACTACCATGCTCAGAATCAGTTATCAGGTGTAAGTGCGTCAGCAAGCAGTGGTGTAAGGTAATATCTGAACCTGGATTTGATGCTGAATTTATTGCTCATAAAATCAATAACAGTCAATTGTCCTCATCGAAAAATGAAGAACAACTTCCCTCTATATTTGGGCTTCGGCGATACAATAAAAAGCCCTTTATTTATCCCACCCATCCGACCTTTACAAATCTTGACTTTTCGCTAAGTTTTATTCCAACTTATGAACAAGGACCTGAATACCGTATCGTTGTGAAAGCATCGTGTAGTGATCTCGTTGTATGCATCAGTCCCTCACCAAAAGATCTTTATCTGTATGTTTGCAATCCTCGCACCAAGCAATATTTTCAACTGCCTCCACCATCTCAAAAGAAACATCCTGCTTTGATTGGTTTTACTTGTGATCCTTTTTATGTGTTTGATAAAGAAGCTGACCAAGTTACACTTAGTACTTGTTTTCGATTCAGCGTCTGTTATGCTTTCTTTGCTAGAGCAAAAGCGGATAGACTGGAAATCGAAATTTTCTCATCTGAAAACAGAGTTTGGAGGAAAGCAATCTTATTGACACCACAGTATTTTGATTATAATTATGCTACGTTAAAAAACTGCTTTACGTACAAGGAGATATTGCATTTTTACAGTGACTGTGCCATTATCGGTTTTGATCCTTACAAGATCAATGAGGATGGTGAAATCCATACCCATTTCATTCAGATGCCCCCATTTGACGCCACTGCAAACCGCGGTGTGTGCATTGGAGTTTTTGGAGGGAAAATACTTGTTGCAGAATTATGTGCACGCTACGTACATCCAAGACAATTGATCAATACAGCACAGGTTAGTAATATCAGTATTATTGAACCAGCAAGTAGTGCGTATGGCATAAAGGTTTGGGAGCTTAACAACTATAGCACTGGTGAATGGTCCATGAAGCATATGATTTATTTTCATGAATTGGTTTCACCAGACTCTCTCCTCACTCAATATACTATGCGAGGATGTCCCAACTCGGAGGTTCTATTTTTCCATCCAAACGATGCTGATACTGTGTTGTTGAGGCTTCCGAAACTAGTTGCTGAATGTAACTTGAAGGATAAAACGATAAAACGAGTTTGTAACTTTAGTAAACAACTTCAGAAGGTATATGGTGTTGCTTTCCCGTGGTGGCCGTCACCACTTCCGTCAATTATGTAGTGGAGTACTACGTATTACAACATTGGCACACGGTTTAAGGAAGAGAATAGAGAAGATATACATTTTATTGTTCTCTTTGGTGCCAATGGAAGCACGCAAGTTATTGTTTGTTTTTCTGTTTATGGTGTTAATGTTGAATTCCTGAATCAACCTTTTATTACTACGTACTTATATTAGGTATTAACAAGCCCTTTTATGGCTCATCGTGTCGATGGTGTTTATGGTCTTCTTCTCCTTGGCTCTTTTTAGGTTCTGTTGTGCATGTATAATTTTGGTACTTACCAC ATGAAGATGAACAACCAAGCTTCCAAATCTCATCGCATGAAAAATGATTTTTATATAATAGATGATCTCCTGCTGCAAATTTTGTTCCGACTACCATGCTCAGAATCAGTTATCAGGTGTAAGTGCGTCAGCAAGCAGTGGTGTAAGGTAATATCTGAACCTGGATTTGATGCTGAATTTATTGCTCATAAAATCAATAACAGTCAATTGTCCTCATCGAAAAATGAAGAACAACTTCCCTCTATATTTGGGCTTCGGCGATACAATAAAAAGCCCTTTATTTATCCCACCCATCCGACCTTTACAAATCTTGACTTTTCGCTAAGTTTTATTCCAACTTATGAACAAGGACCTGAATACCGTATCGTTGTGAAAGCATCGTGTAGTGATCTCGTTGTATGCATCAGTCCCTCACCAAAAGATCTTTATCTGTATGTTTGCAATCCTCGCACCAAGCAATATTTTCAACTGCCTCCACCATCTCAAAAGAAACATCCTGCTTTGATTGGTTTTACTTGTGATCCTTTTTATGTGTTTGATAAAGAAGCTGACCAAGTTACACTTAGTACTTGTTTTCGATTCAGCGTCTGTTATGCTTTCTTTGCTAGAGCAAAAGCGGATAGACTGGAAATCGAAATTTTCTCATCTGAAAACAGAGTTTGGAGGAAAGCAATCTTATTGACACCACAGTATTTTGATTATAATTATGCTACGTTAAAAAACTGCTTTACGTACAAGGAGATATTGCATTTTTACAGTGACTGTGCCATTATCGGTTTTGATCCTTACAAGATCAATGAGGATGGTGAAATCCATACCCATTTCATTCAGATGCCCCCATTTGACGCCACTGCAAACCGCGGTGTGTGCATTGGAGTTTTTGGAGGGAAAATACTTGTTGCAGAATTATGTGCACGCTACGTACATCCAAGACAATTGATCAATACAGCACAGGTTAGTAATATCAGTATTATTGAACCAGCAAGTAGTGCGTATGGCATAAAGGTTTGGGAGCTTAACAACTATAGCACTGGTGAATGGTCCATGAAGCATATGATTTATTTTCATGAATTGGTTTCACCAGACTCTCTCCTCACTCAATATACTATGCGAGGATGTCCCAACTCGGAGGTTCTATTTTTCCATCCAAACGATGCTGATACTGTGTTGTTGAGGCTTCCGAAACTAGTTGCTGAATGTAACTTGAAGGATAAAACGATAAAACGAGTTTGTAACTTTAGTAAACAACTTCAGAAGGTATATGGTGTTGCTTTCCCGTGGTGGCCGTCACCACTTCCGTCAATTATGTAG MKMNNQASKSHRMKNDFYIIDDLLLQILFRLPCSESVIRCKCVSKQWCKVISEPGFDAEFIAHKINNSQLSSSKNEEQLPSIFGLRRYNKKPFIYPTHPTFTNLDFSLSFIPTYEQGPEYRIVVKASCSDLVVCISPSPKDLYLYVCNPRTKQYFQLPPPSQKKHPALIGFTCDPFYVFDKEADQVTLSTCFRFSVCYAFFARAKADRLEIEIFSSENRVWRKAILLTPQYFDYNYATLKNCFTYKEILHFYSDCAIIGFDPYKINEDGEIHTHFIQMPPFDATANRGVCIGVFGGKILVAELCARYVHPRQLINTAQVSNISIIEPASSAYGIKVWELNNYSTGEWSMKHMIYFHELVSPDSLLTQYTMRGCPNSEVLFFHPNDADTVLLRLPKLVAECNLKDKTIKRVCNFSKQLQKVYGVAFPWWPSPLPSIM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00807.1 vs. NCBI nr
Match: gi|902113665|gb|KNA03832.1| (hypothetical protein SOVF_205390 [Spinacia oleracea]) HSP 1 Score: 916.8 bits (2368), Expect = 1.500e-263 Identity = 435/436 (99.77%), Postives = 435/436 (99.77%), Query Frame = 1
BLAST of Spo00807.1 vs. NCBI nr
Match: gi|902182717|gb|KNA09978.1| (hypothetical protein SOVF_148680 [Spinacia oleracea]) HSP 1 Score: 337.4 bits (864), Expect = 3.700e-89 Identity = 175/438 (39.95%), Postives = 266/438 (60.73%), Query Frame = 1
BLAST of Spo00807.1 vs. NCBI nr
Match: gi|566260203|ref|XP_006389655.1| (hypothetical protein POPTR_0021s01040g [Populus trichocarpa]) HSP 1 Score: 154.8 bits (390), Expect = 3.400e-34 Identity = 121/441 (27.44%), Postives = 202/441 (45.80%), Query Frame = 1
BLAST of Spo00807.1 vs. NCBI nr
Match: gi|743909115|ref|XP_011048029.1| (PREDICTED: uncharacterized protein LOC105142208 [Populus euphratica]) HSP 1 Score: 154.8 bits (390), Expect = 3.400e-34 Identity = 121/441 (27.44%), Postives = 202/441 (45.80%), Query Frame = 1
BLAST of Spo00807.1 vs. NCBI nr
Match: gi|920696767|gb|KOM39992.1| (hypothetical protein LR48_Vigan04g019000 [Vigna angularis]) HSP 1 Score: 154.5 bits (389), Expect = 4.400e-34 Identity = 134/445 (30.11%), Postives = 203/445 (45.62%), Query Frame = 1
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q970_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205390 PE=4 SV=1) HSP 1 Score: 916.8 bits (2368), Expect = 1.000e-263 Identity = 435/436 (99.77%), Postives = 435/436 (99.77%), Query Frame = 1
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTF8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148680 PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 2.600e-89 Identity = 175/438 (39.95%), Postives = 266/438 (60.73%), Query Frame = 1
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Match: U7E1R3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0021s01040g PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 2.300e-34 Identity = 121/441 (27.44%), Postives = 202/441 (45.80%), Query Frame = 1
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Match: A0A0L9UBT3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g019000 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 3.100e-34 Identity = 134/445 (30.11%), Postives = 203/445 (45.62%), Query Frame = 1
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Match: K7LCD4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G075900 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 5.800e-33 Identity = 131/467 (28.05%), Postives = 205/467 (43.90%), Query Frame = 1
BLAST of Spo00807.1 vs. ExPASy Swiss-Prot
Match: FB341_ARATH (F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.600e-7 Identity = 76/340 (22.35%), Postives = 135/340 (39.71%), Query Frame = 1
BLAST of Spo00807.1 vs. ExPASy Swiss-Prot
Match: FB253_ARATH (F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 2.300e-6 Identity = 59/235 (25.11%), Postives = 102/235 (43.40%), Query Frame = 1
BLAST of Spo00807.1 vs. TAIR (Arabidopsis)
Match: AT5G49610.1 (F-box family protein) HSP 1 Score: 58.9 bits (141), Expect = 8.900e-9 Identity = 76/340 (22.35%), Postives = 135/340 (39.71%), Query Frame = 1
BLAST of Spo00807.1 vs. TAIR (Arabidopsis)
Match: AT5G07610.1 (F-box family protein) HSP 1 Score: 55.1 bits (131), Expect = 1.300e-7 Identity = 59/235 (25.11%), Postives = 102/235 (43.40%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00807.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00807.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00807.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo00807.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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