Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCAAAATCATCTCTTCCACCTTGTCATCTTTCAAAGTATCCCCAAAAGTGGAAACTTCTTGTTTATTTTAATGATTTTTTATTATAAAAATTCAAAAAAAGGTAGACGCCCAATTAATATCCAATTTAATTTTAAATTTATTTCGAGAAAAAGACTTATTTTTTTTTTGTCAATTATCACCAATTCAATTCTCCATCTCCTTCCTTCCTCCCTCTGCATCGCCGATCAAACCTTCTTCTTCTTCTTTACCAGCGCGACTGCAGAGGAGAGAGAAAAAAACAAGGGTTTCAAATTCCACCATTAATGGCGATTCTTTACGCTCTAGTAGCTCGAGGATCGGTTGTTTTGGCGGAATTTGTGGGAACATCGACGAATGCTAGCTCAATTGCGAAGCAGATTCTCGATAAGATTCCCGGTGATAATGATACTCACGTTTCTTATTCTCAAGATCGGTATATTTTCCATGTCAAACGCACCGATGGTCTTACTGTTCTTTGTATGGCTGAGGATAATGCCGGACGTAACTCTCTCTCTGTTTCTCTTTATTATTTTGTTGAATTTGATTGTTTTTATTGACTGTGTTGTGTTTTGAGGGTTTAATTTGTTGTTTTATTGATTGATTTGGTGGGTTTGATTGCGTATGTTAGGGTTCTTTTTGTTGTTGGTGATTGTTATCGATTGCTTATTGTGAAGGCGTTGATTTTGAAAAAAAACAGCATGAATTCTTTGACTTGATTTTGAGGTGCTTAGGGTTAGATGATAGATTTTTTTTTTGATCTCCTTCATTCCGGGAGTAGTTGTTAAATACAAGTATTATGTACTTGGTATTTGAATTTCGGAAAAAAGATGACAACTGTTTTTTGTTTGAAATAGTCTTGGTTTATGATTGGATTTTCCTTGATAACCTTGTTAGGACGATACAACTACTCTAAAGGGTATTTTAAGGAAATTATGTCGTATCTATGAAGGTTTGAGACAATGTGAGACATCAGACATGTGACCATTGTTGTTTTTATGGTTGATGAGTGGATTGCTTTGTAGAAATTGGAATTTGATATTTGGGTTAAACTAGTTAAAGTACTTGTGTTCCGGAGTATGTTTGGGTTGTCAAGAGAAATAGAGTATGTGTTTATAAGAGAGGGGGGTTGCAGGTGGGGGTTGGGGGGAGGTAGGGAAAACAATATCAAAGTTAAGTTTTGTTTGTTCAGTTCGATTCTGACTGTGAGATTATCCTGATAGTTAAGATTTTAGTGAGTGATATGGATTGATTTTTATAGGAAAAAGCAAGATTGTTTTTTTTACCCCATGCTAGTTGATTTGAAAAATTTTAGTTTGGTTCTTGAGAAATCGTTTGACAAAATCATTTTCTGAGTTGAATATGTTAAAATATGTTTGACTTGTGAGCAAATTTTCCATCTGCCTTCTCAAAGTGAGAAGTGGATCCACTGATACTATGTTGGGTAGTCTTCGCTCCCAATTGAAAAGGAGGAATTATAACTGTGATTTCGAGTCCAGGAGCTGTTAAAATGCTAAGATGAAATTTTGTAATCCTAATATGCTTCTGCTGTAGGTTCTAGTATGTTTTCCTTGATAGTTGGCAGCCTGATTGGACCTAGATGTCTACCTTTTTTTTTAACAAATAAATTTTATTTACCTACCAAGTATAGTAAAACAAGAATTACAACCTACAAAACAACTAGGCTTTTAGTGGTAATAACTTCACCCTACCTTCTAGGAAGGGTTGAGGAAGCCCCACTAACCCCAACTAAACAAAAACGAGCCTCATTTGCTCAGTACATCGAACTGCCACATTAAATAAAATTCTGTTCACAACAGTGCTACAAGAGTCAATTTTGCTGTTAAACACTTTTGCATTTCTTTGCTGCCACAAATTGTTGACTGTTTCAATGAATGCTATACTCTTCACTTTACTTGCTGCCTTAGTGCTTCTGCAATGCTTCGTAGCCCATCTGATCTCATCAGGAAAACTCAGATTGTCTCTAGTGTCACTCAACTTCTACAAAACAGAACACCAAATCTCCTTAGAATACAGGCAGTAAAAGAACAGATGATGCAGGTCTCAGAACCCTGCTGACACAAACTGCAGACACGATCAGTTTGTATTTTCCACTTCAACAATCTATCTTTTGTTGCTAGCCTATTCTGAACAGCTAATCAAACAATAAACGTACTTTTCGGACTTGCCTTGCTGTTGCAAACAAGTCTCTTCCACTCCACCTGATCACTACACTGCCTCAAGTTTTATACATAATTTGGATTGCGAAGTTACCATTGGCATTAAACTTATCTGTCCCTCCTGCATCTTGAAGCACATTCCGACACTGCCATATCTTCCTCATGGACCAAGTGAGCCCATTAGGAATTGGCATCTAGATGTCTACCTTAACCTTGTTGTAATTGGATCTTGATATGGAACATATTACTGCTTGACCTGTTTTTCAAGAAATTTTATATGGAACATATTACTGCGTGAACTGGTGTAAATGCAAATGTTTTTGGGATTTATACTATATACCATTACCTTTATATAAGTGGTCCATGAGTAATTCTGTATGTTCAGGCATTGGTCGAGATAAACCTTGTGTGTGTGTGTGTGGCTCAGTTACCTTGTTGTCATTTGAATACCTGTGTGCCGTGTTAATTCCTTGGCTCATGTTATCACATATGAGCAGAAATTAGGACACTCTTTCCTCTATTTTGAATTTCTGATACATTTTAACTTTGTTTGTACAGGAAGAATCCCATTTGCATTTCTTGAAGATATACATCAAAGGTTTGTAAAGACCTATGGCCGCGCTATACATACTTCACCTGCATATGCGATGAATGATGAGTTTTCAAGGGTGTTGAGCCAACAAATGGACTATTACTCAAATGACCCAAACGCCGACAGACTAAACAGATTGAAAGGTGAAATGTCTCAGGTATGGTTTGCATTGCCTACCATTCTTCTTTAGATTTGTGGTGGTCCAACTCAACTGGATGTCTTCATTTCCTTTCACTTGGGTGATTGAAGTTTGTGTCATGAAAAGTATATATGGTGCTAATAGAAAATTGTACTGGATCAAGTGCTTACTTGTTACGCCACGTAGCAAAAAGATTAGGGTTATTTAATTTTTTGTTATCCTTGGGATAGTGAGGATCAATGGAAACAACCTATCTGCAATTGCAGGGTAAGGAGGTCATGTACGCCCGAACCCCCCTTACCCTTCCTTGTTGCGGGAGCCTCTTTGAAGGCAATGGGATAGTGAAGTGCATGCTTGCAAGTTTCTGTCTGGGAAATCTATGTTTTTCAGGTGTTAATATAATGTCATTTTGATGCAACAATTGTAGGTGCGTACTGTGATGATTGAGAATATAGATAAAGTTTTGGATAGGGGGGAGCGCCTGGACCTGCTTGTTGATAAATCTGCCACATTGCAAGGCAATACTCTTCGCTTCAGAAAGCAAAGTCGTCGCTTAAGAAGCTCTGTCTGGTGGAGAAATTGCAGGCTCATGTGAGTAAACTAATGTGAAATTTTCTTTGATGTTTCTATTTGCATAATTATGCTCTGTTGCATGTTTCCTTTTTATGTTTGTACTGGATGTGAAGAAACTTAGAAGGAACACAGTAGTTCGTTCTATCTGACAAGATTTCTATGATTCTGTCTATCTACATATGTGTAATGTATCATGTGATGCTGCAAGCCTGCAACCAACTAACATTCGTTCACTGCTTGCCATCATCTAATACAACACGCTTCATATTTTCAACATTTGATCCATAACGAATATGAAGGGTTATTATCTGGAATTCTGTATGTGTAAATGATTAATATGAAGTATTAACATGGACATCAAAGTCGGATTTGATGTGGAAGAAGAAAACTCAAAAGCGTTAGAATTCTAACCTCTAGTGCACTGAATGATCCACTAGAGTTAATTACGTGGTGTTATTCTTGAAAAACTTCAAGCTTGACTGAATACTGAGTTTTTCTAATTATTGCAGGTTTACTTTGATTATCGTTCTCTTGATCATCTCATACATTGTGGTTGCCTTTGTTTGTCATGGACCTTTGCTACCCTCCTGCTTTTAAGTATGTGGCCGAGGCATAGTGCTTTTCATATTCTTCTCAGTAGATATATTGCTCGACAGATTAATGCTGATTGGGCCATTGTCTACAATTTTCTGGTGGTGATGATCGATTTCTTCTGAAGCTCGATTTTTTAAGATGGAAATGCTCAACAAGGCATATAACTAATTGTTGTGAAATTGTTAGTGCTTTATTTGTGTATATGCAAAGGTTTCCTCCTATATTCTTCTCATTTTTTGGTTTTAATCTCTTGGCTCTGCAATTCGTTTTTAATTTCTCGGATGGACTATTGGTGGTGTGGTGTTATGTTTCTTTCCGGGGATTAATTGTGAACATTGTATAGTTCTGAGTAGTATGACAATTCGTTATACTCTTGTTCAATATATGTGCGTTGAAAGGTATATGCGAGGTCTTTGGTTAATTTACTTGCATTTTGTTTTCAATACAAAGCTGCAATTGGCGAGAATAATCGTTGCAAAGAAGTGATTTTCTCGTATGTACTTGAGGA ATCAAAATCATCTCTTCCACCTTGTCATCTTTCAAAGTATCCCCAAAAGTGGAAACTTCTTGTTTATTTTAATGATTTTTTATTATAAAAATTCAAAAAAAGGTAGACGCCCAATTAATATCCAATTTAATTTTAAATTTATTTCGAGAAAAAGACTTATTTTTTTTTTGTCAATTATCACCAATTCAATTCTCCATCTCCTTCCTTCCTCCCTCTGCATCGCCGATCAAACCTTCTTCTTCTTCTTTACCAGCGCGACTGCAGAGGAGAGAGAAAAAAACAAGGGTTTCAAATTCCACCATTAATGGCGATTCTTTACGCTCTAGTAGCTCGAGGATCGGTTGTTTTGGCGGAATTTGTGGGAACATCGACGAATGCTAGCTCAATTGCGAAGCAGATTCTCGATAAGATTCCCGGTGATAATGATACTCACGTTTCTTATTCTCAAGATCGGTATATTTTCCATGTCAAACGCACCGATGGTCTTACTGTTCTTTGTATGGCTGAGGATAATGCCGGACGAAGAATCCCATTTGCATTTCTTGAAGATATACATCAAAGGTTTGTAAAGACCTATGGCCGCGCTATACATACTTCACCTGCATATGCGATGAATGATGAGTTTTCAAGGGTGTTGAGCCAACAAATGGACTATTACTCAAATGACCCAAACGCCGACAGACTAAACAGATTGAAAGGTGAAATGTCTCAGGTGCGTACTGTGATGATTGAGAATATAGATAAAGTTTTGGATAGGGGGGAGCGCCTGGACCTGCTTGTTGATAAATCTGCCACATTGCAAGGCAATACTCTTCGCTTCAGAAAGCAAAGTCGTCGCTTAAGAAGCTCTGTCTGGTGGAGAAATTGCAGGCTCATGTTTACTTTGATTATCGTTCTCTTGATCATCTCATACATTGTGGTTGCCTTTGTTTGTCATGGACCTTTGCTACCCTCCTGCTTTTAAGTATGTGGCCGAGGCATAGTGCTTTTCATATTCTTCTCAGTAGATATATTGCTCGACAGATTAATGCTGATTGGGCCATTGTCTACAATTTTCTGGTGGTGATGATCGATTTCTTCTGAAGCTCGATTTTTTAAGATGGAAATGCTCAACAAGGCATATAACTAATTGTTGTGAAATTGTTAGTGCTTTATTTGTGTATATGCAAAGGTTTCCTCCTATATTCTTCTCATTTTTTGGTTTTAATCTCTTGGCTCTGCAATTCGTTTTTAATTTCTCGGATGGACTATTGGTGGTGTGGTGTTATGTTTCTTTCCGGGGATTAATTGTGAACATTGTATAGTTCTGAGTAGTATGACAATTCGTTATACTCTTGTTCAATATATGTGCGTTGAAAGGTATATGCGAGGTCTTTGGTTAATTTACTTGCATTTTGTTTTCAATACAAAGCTGCAATTGGCGAGAATAATCGTTGCAAAGAAGTGATTTTCTCGTATGTACTTGAGGA ATGGCGATTCTTTACGCTCTAGTAGCTCGAGGATCGGTTGTTTTGGCGGAATTTGTGGGAACATCGACGAATGCTAGCTCAATTGCGAAGCAGATTCTCGATAAGATTCCCGGTGATAATGATACTCACGTTTCTTATTCTCAAGATCGGTATATTTTCCATGTCAAACGCACCGATGGTCTTACTGTTCTTTGTATGGCTGAGGATAATGCCGGACGAAGAATCCCATTTGCATTTCTTGAAGATATACATCAAAGGTTTGTAAAGACCTATGGCCGCGCTATACATACTTCACCTGCATATGCGATGAATGATGAGTTTTCAAGGGTGTTGAGCCAACAAATGGACTATTACTCAAATGACCCAAACGCCGACAGACTAAACAGATTGAAAGGTGAAATGTCTCAGGTGCGTACTGTGATGATTGAGAATATAGATAAAGTTTTGGATAGGGGGGAGCGCCTGGACCTGCTTGTTGATAAATCTGCCACATTGCAAGGCAATACTCTTCGCTTCAGAAAGCAAAGTCGTCGCTTAAGAAGCTCTGTCTGGTGGAGAAATTGCAGGCTCATGTTTACTTTGATTATCGTTCTCTTGATCATCTCATACATTGTGGTTGCCTTTGTTTGTCATGGACCTTTGCTACCCTCCTGCTTTTAA MAILYALVARGSVVLAEFVGTSTNASSIAKQILDKIPGDNDTHVSYSQDRYIFHVKRTDGLTVLCMAEDNAGRRIPFAFLEDIHQRFVKTYGRAIHTSPAYAMNDEFSRVLSQQMDYYSNDPNADRLNRLKGEMSQVRTVMIENIDKVLDRGERLDLLVDKSATLQGNTLRFRKQSRRLRSSVWWRNCRLMFTLIIVLLIISYIVVAFVCHGPLLPSCF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00840.1 vs. NCBI nr
Match: gi|902177818|gb|KNA09025.1| (hypothetical protein SOVF_157460 [Spinacia oleracea]) HSP 1 Score: 428.7 bits (1101), Expect = 6.100e-117 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1
BLAST of Spo00840.1 vs. NCBI nr
Match: gi|731353162|ref|XP_010687916.1| (PREDICTED: vesicle-associated membrane protein 711 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 397.9 bits (1021), Expect = 1.100e-107 Identity = 199/219 (90.87%), Postives = 213/219 (97.26%), Query Frame = 1
BLAST of Spo00840.1 vs. NCBI nr
Match: gi|923505191|ref|XP_013666231.1| (PREDICTED: vesicle-associated membrane protein 711-like [Brassica napus]) HSP 1 Score: 369.8 bits (948), Expect = 3.300e-99 Identity = 182/219 (83.11%), Postives = 206/219 (94.06%), Query Frame = 1
BLAST of Spo00840.1 vs. NCBI nr
Match: gi|685257491|ref|XP_009126340.1| (PREDICTED: vesicle-associated membrane protein 711-like [Brassica rapa]) HSP 1 Score: 369.8 bits (948), Expect = 3.300e-99 Identity = 182/219 (83.11%), Postives = 207/219 (94.52%), Query Frame = 1
BLAST of Spo00840.1 vs. NCBI nr
Match: gi|923796105|ref|XP_013685833.1| (PREDICTED: vesicle-associated membrane protein 711 [Brassica napus]) HSP 1 Score: 369.0 bits (946), Expect = 5.700e-99 Identity = 178/218 (81.65%), Postives = 206/218 (94.50%), Query Frame = 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP50_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157460 PE=3 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 4.200e-117 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BN46_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193700 PE=3 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 8.000e-108 Identity = 199/219 (90.87%), Postives = 213/219 (97.26%), Query Frame = 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Match: A0A078CGH9_BRANA (BnaA01g04780D protein OS=Brassica napus GN=BnaA01g04780D PE=3 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 2.300e-99 Identity = 182/219 (83.11%), Postives = 207/219 (94.52%), Query Frame = 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZS63_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 5.200e-99 Identity = 177/218 (81.19%), Postives = 206/218 (94.50%), Query Frame = 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Match: M4FG42_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 5.200e-99 Identity = 178/218 (81.65%), Postives = 205/218 (94.04%), Query Frame = 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2) HSP 1 Score: 365.5 bits (937), Expect = 3.900e-100 Identity = 177/218 (81.19%), Postives = 204/218 (93.58%), Query Frame = 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 8.500e-95 Identity = 168/218 (77.06%), Postives = 199/218 (91.28%), Query Frame = 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 1.200e-93 Identity = 168/220 (76.36%), Postives = 200/220 (90.91%), Query Frame = 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 2.000e-67 Identity = 118/219 (53.88%), Postives = 176/219 (80.37%), Query Frame = 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.100e-46 Identity = 96/213 (45.07%), Postives = 145/213 (68.08%), Query Frame = 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Match: AT4G32150.1 (vesicle-associated membrane protein 711) HSP 1 Score: 365.5 bits (937), Expect = 2.200e-101 Identity = 177/218 (81.19%), Postives = 204/218 (93.58%), Query Frame = 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Match: AT2G25340.1 (vesicle-associated membrane protein 712) HSP 1 Score: 347.8 bits (891), Expect = 4.800e-96 Identity = 168/218 (77.06%), Postives = 199/218 (91.28%), Query Frame = 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Match: AT5G11150.1 (vesicle-associated membrane protein 713) HSP 1 Score: 344.0 bits (881), Expect = 6.900e-95 Identity = 168/220 (76.36%), Postives = 200/220 (90.91%), Query Frame = 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Match: AT5G22360.1 (vesicle-associated membrane protein 714) HSP 1 Score: 256.9 bits (655), Expect = 1.100e-68 Identity = 118/219 (53.88%), Postives = 176/219 (80.37%), Query Frame = 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Match: AT1G04750.1 (vesicle-associated membrane protein 721) HSP 1 Score: 146.0 bits (367), Expect = 2.800e-35 Identity = 80/213 (37.56%), Postives = 132/213 (61.97%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00840.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00840.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00840.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo00840.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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