Spo00860 (gene)

Overview
NameSpo00860
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibosomal protein S19
Locationchr3 : 45050340 .. 45054336 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGAGCTGAGACCAAGCTTAGGTAAGCTTGGCTCGAACTGACGTTTCTTTTTGTTTTTTCCACGTTGAAATTATTTCATTTATGGCAAATAATTCTACCCAAAATAACCTCATCCTAAAATTCTAATTCCAACTCTATGTCTTATCTCAAACTCTTATTTAATTAATCAGTGCAAGACTCTTATTTTCTTAATTCCCTTTCCTATTTCAGACAGGGAGAACATTAAAGAACGGAAAAATATCATGTCCATTTGTGACATTGTAATCTAATCAAGGTCACCTCGACAATTTCTTCTAGCTTTTGGCTGGACTGAATTTCTTAAACATGTTGGTGTATAGTTCTTAAACAGAAGATGGCTTCCTAGGAAAGCAGCTGTTACTGAAAAACATTATATTTCTGATGCTTTAGTTCAAAGCTATAGCTAGATAAGATCCTGTTTTTCTTATACCACTTCAACCAAATCCAAGTATGTTTCTTTTTCGTATAGATTATCCTTTCTTCTTTTCTATCGTACCGGGTTTATAAAATATAAATGTATGAACCACAGTAGGGATGACATGTGGGTGCAAATTTGTGCATACCACACTGCACCCGCACCAGTTGAGACGGGGATGGATACAACTTTGACGGATAGTAGGCGGATAGTGAGTAGGTGATGGGATTTAAGCTCATACCCTCTCCACATCCGCCTACCGACTCCGCGTCCTACCCGCCCGCCCGTCATTATACCCGTATGCTTTGTTTTTATTTTACAACTTTTTAATACTATACTACAGGTCATATTAATATTAGGCCCATTTAGAATTAAAACCCTATTTTCTTATTTAGTCTTCACTCCCTTTTTATCTCTCCTAATTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGGTCAGTTTTACCAATTCTTTACTTTCTATTTAATTGTAATTTCTGCCAAATCTGTTAATTTGAGTGTCGGTCTTTGAGTCATTGAGACCCATTAATTTGCTTAAATGAATCGCAAAAAAAAAAAATCAATTGTACAACTTGCCAATTTGCTTCAATCGCTAGCTAGTACGGAGTACTAAATTGATAAATTGATTACTTAACTTGTAAATTTATTATGCATTGAAAGTCCATGTGGGTTTTATCCAATGTTGTTTGCCACTTGCGAGCTCATCTATTGATTTTGGGAAGCTTGTAAACTTTAATGGGGTTTCTGATTTTACTCGAAAAATGAGGTCATCGAGTATTCATCATTGATAATTCTTTAATTCTTCCATCAATTATAAGCATAATATTTTATAAATAACTTGTTGGTCGGTGATTAAATTTGTTGAAAAAGCTATTAAGATTAACAATAAAATAAAGCATGAACATAAATTTTGATATGTTCACAGCCGCATCAAATCGAATAAGCTAAAAGAGAGGATCTTGTTTGATAATTTATTCCTGTTCCGTATTTGAAAGGGAGAATTTACATATTATTGCTTATCTTTTGATAATTCTTCACCAATTTTTGATGTTTGGGGGTAATGTTAGATGTAGGAAGATAAAGTACTTAATACATCCAACTAATTTTAGATGGCTGGGGTGATGTTACATGCAGGGAACGCAATACTGAATGATTGCTTGAATTTAGTTGGGTTTTAGCTTTAGCTTAAAATTTTCAGGCTTCAATTTATTTTGGGACTTTATCTTGTCGGGAATTTAACTCATACCATAAGTTGAGTTGATAGTCACATGAAACTATCATTCAAATTAATATGCAAGACCTAATTAACCACCAAGATTCGCCCCTAAAACCACAACAAAAATGTTCAAATGCAACAATAACATCCAATTTTCAACAAAATCAAGTAGACCTTTGTTAATTAAATCAAACCCAGAATTTGAAAGACCTAATTAACCACCAAGATTCTCCCCCAAAACCACAACAAAAATGTTCAAATGTAACAAAAACATCCAATTTTCAATAAAATCAAGTAGAGCTAATTGATTAAATGGAACACACAATTTTCCCCCAAATGATCGACAAATTCCCTCCATCTATTGGCGGAGCCAGGATTTTTTATTTGGGGTGTCGACATTATAACTACATGCTGAAAATGTTTTATAAAATATTTATTTGACACATTTCATAAACTTTATTCACGAGTTATGACACATTAATCAACAATCCTCTTAAATTAACAGTACGAGGACTAAATCAACTTATTAAATAAAGTTTTGCATTGATAATTTGATATTTGACAAGTATCATTTATGTGTGAGATCCATTCAACTCTTAAGATTATTATACAAGTACAAGTTCCTCCTTAATCCTTATACCTTAAGTACTGCGTTGTTAATGTGTAGTCCTTCCACCTCAAATTGATCGTCAATTTCTATTTAGGATGTCAGAGACAATTGTGCTCCTACAATTTGCTCTTGAATTTACTCTTAGCTTGCTCTTGCCTCTGATCTTTCCCAACTACTTGTGAGAATGTGCACTAAAACAGAGTAAGACTGCTATCGTGTTTCTTGTTATAAAGCACCCACATATGTCAGGGAGCCAGAGAGGTGAATTCTCAGGTCCTTGTGGCCGTTGTCATCCATAATCAGTCCTATAATGAGATGTGCTGATTAATTTTGAGTTGTGACTTTGAAGCTTGAGCTTCCTTTTTTAAAGATCAAAAGGTTTATGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGCAATGACTTGGTTTTGAGGTCGTTGTCTTTTCTCATGCGTGATTTATCTGATGATAATTAGGTTTTGACCATGGATCTATGTGGTGTTTGATTTAGTTGACCTTTTATTATTTCTTAATGGCTGCAATTTAGATTATATCACTTACATTGTTATCAGAGTGACAATCCCAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGAGCAAACTAGTGGTAGTGGCTGCCTCCCTCCATTTGCTGTGCTTCTATATTCCATGCACACAGAGGATTCTTACCTCGTGTTTTTCATCTTGTTGAACTAGCTTTTATGCCATTCCTAGTAACATTGTATTTCGTTGGGAAATTTATGAAAACCCTTGTAACTTTGTAAGCCCCTTTATGGAACTCGAATTGTTTTTGTTCCTCAACAATGTTTTCCAGCTAAAACAACCATTTTAGTCAATTAATTGCCTCATTTCAGTTAAAGAGAATAAGAAATGGGAAGAGCATACATTTTTGGTACTTGTACATCCC

mRNA sequence

ATGAGCCGAGCTGAGACCAAGCTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGAGCAAACTAGTGGTAGTGGCTGCCTCCCTCCATTTGCTGTGCTTCTATATTCCATGCACACAGAGGATTCTTACCTCGTGTTTTTCATCTTGTTGAACTAGCTTTTATGCCATTCCTAGTAACATTGTATTTCGTTGGGAAATTTATGAAAACCCTTGTAACTTTGTAAGCCCCTTTATGGAACTCGAATTGTTTTTGTTCCTCAACAATGTTTTCCAGCTAAAACAACCATTTTAGTCAATTAATTGCCTCATTTCAGTTAAAGAGAATAAGAAATGGGAAGAGCATACATTTTTGGTACTTGTACATCCC

Coding sequence (CDS)

ATGAGCCGAGCTGAGACCAAGCTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGA

Protein sequence

MSRAETKLSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTSRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00860.1Spo00860.1mRNA


Homology
[Close]
BLAST of Spo00860.1 vs. NCBI nr
Match: gi|902154914|gb|KNA05857.1| (hypothetical protein SOVF_186490 [Spinacia oleracea])

HSP 1 Score: 190.7 bits (483), Expect = 1.700e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI
Sbjct: 1   MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR
Sbjct: 61  NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 92
[Close]
BLAST of Spo00860.1 vs. NCBI nr
Match: gi|469402881|dbj|BAN04690.1| (ribosomal protein S19 [Beta vulgaris])

HSP 1 Score: 170.6 bits (431), Expect = 1.800e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92
[Close]
BLAST of Spo00860.1 vs. NCBI nr
Match: gi|514724809|ref|XP_004955585.1| (PREDICTED: ribosomal protein S19, mitochondrial [Setaria italica])

HSP 1 Score: 141.4 bits (355), Expect = 1.200e-30
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 1 

		  

Query: 8   LSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTS----------RIMPRRALWKGPFVDA 67
           +S   +  F R S ++   A A    P      S          R    RALWKG FVDA
Sbjct: 3   ISSLIASRFARSSHALPAAAAAISQAPRAQHTASPLLSGLGAAARAFSSRALWKGAFVDA 62

Query: 68  FLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAF 127
           FL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGK+ VRCKI E KVGHKFGEFAF
Sbjct: 63  FLARIKKNRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAF 122

Query: 128 TRKRKPHKTDTGKKKGGR 136
           TR+R+PH+T TGK K G+
Sbjct: 123 TRRRRPHRTITGKGKQGK 140
[Close]
BLAST of Spo00860.1 vs. NCBI nr
Match: gi|226528256|ref|NP_001143727.1| (uncharacterized protein LOC100276475 [Zea mays])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-30
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

		  

Query: 41  SRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVR 100
           +R    RALWKG FVDAFL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGKS VR
Sbjct: 47  ARDFSSRALWKGAFVDAFLARIKKNRENMNGKKIWSRRSSILPEFVGSTVLIYNGKSHVR 106

Query: 101 CKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           CKI E KVGHKFGEFAFTR+R+PH+T TGK   G+
Sbjct: 107 CKITEGKVGHKFGEFAFTRRRRPHRTITGKGNQGK 141
[Close]
BLAST of Spo00860.1 vs. NCBI nr
Match: gi|316996013|dbj|BAD83473.2| (ribosomal protein S19 (mitochondrion) [Nicotiana tabacum])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-30
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRR++WKG FVDAFLLR+K+ ++ L N+KIWSRRSSILPEFV   VRIYNGK+FVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTD--TGKKKG 134
            E KVGHKFGEFAFTRKR+P +T+   G+KKG
Sbjct: 61  TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKKG 92
[Close]
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF05_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186490 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.200e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI
Sbjct: 1   MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR
Sbjct: 61  NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 92
[Close]
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BS99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193640 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92
[Close]
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: M5AUG4_BETVU (Ribosomal protein S19 OS=Beta vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92
[Close]
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: K4A177_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_032619mg PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.300e-31
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 1 

		  

Query: 8   LSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTS----------RIMPRRALWKGPFVDA 67
           +S   +  F R S ++   A A    P      S          R    RALWKG FVDA
Sbjct: 3   ISSLIASRFARSSHALPAAAAAISQAPRAQHTASPLLSGLGAAARAFSSRALWKGAFVDA 62

Query: 68  FLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAF 127
           FL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGK+ VRCKI E KVGHKFGEFAF
Sbjct: 63  FLARIKKNRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAF 122

Query: 128 TRKRKPHKTDTGKKKGGR 136
           TR+R+PH+T TGK K G+
Sbjct: 123 TRRRRPHRTITGKGKQGK 140
[Close]
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: B6TC74_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.400e-30
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

		  

Query: 41  SRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVR 100
           +R    RALWKG FVDAFL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGKS VR
Sbjct: 47  ARDFSSRALWKGAFVDAFLARIKKNRENMNGKKIWSRRSSILPEFVGSTVLIYNGKSHVR 106

Query: 101 CKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           CKI E KVGHKFGEFAFTR+R+PH+T TGK   G+
Sbjct: 107 CKITEGKVGHKFGEFAFTRRRRPHRTITGKGNQGK 141
[Close]
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_PETHY (Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 2.800e-32
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRR++WKG FVDAFLLR+K+ ++ L N+KIWSRRSSILPEFV   VRIYNGK+FVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTD--TGKKKG 134
            E KVGHKFGEFAFTRKR+P +T+   G+K+G
Sbjct: 61  TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRG 92
[Close]
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 2.800e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M  R++WK PFVDAFL++    K    N+KIWSRRS+ILPE+V + VRIYNGK+ VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK---KKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 104 NEAKVGHKFGEFAFTRKRKPH 125
            E KVGHKFGEFAFTRK K H
Sbjct: 191 TEGKVGHKFGEFAFTRKVKKH 208
[Close]
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_TETSU (Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis GN=RPS19 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-18
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1 

		  

Query: 47  RALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEA 106
           RA+WKGPF+D F  R  +N    +N KI+SRRS + P+F+G  V IYNG  ++  KI E 
Sbjct: 3   RAIWKGPFIDPFFFR--KNGSSNSNNKIYSRRSVVSPKFIGREVEIYNGHKWITIKIKED 62

Query: 107 KVGHKFGEFAFTRKRKPHKTDT 129
            +GHKFGEFAFTRK   HK  T
Sbjct: 63  MIGHKFGEFAFTRKATIHKKKT 82
[Close]
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_MARPO (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.400e-17
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1 

		  

Query: 47  RALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEA 106
           R++WKGPFVD  L      K++    +IWSRRS ILP+FVG   +IYNGK FV  KI E 
Sbjct: 3   RSIWKGPFVDTCLF-----KQKKIRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 107 KVGHKFGEFAFTRK 121
            VGHKFGEFA TRK
Sbjct: 63  MVGHKFGEFASTRK 71
[Close]
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RS19_SPHWW (30S ribosomal protein S19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsS PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.700e-16
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1 

		  

Query: 47  RALWKGPFVDAFLLRLKENKEQLANK---KIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 106
           R++WKGPFVD  LLR  E  +    +   K WSRRS+ILP+FVG    +YNG+ FV   +
Sbjct: 3   RSIWKGPFVDLHLLRKAEGAQDSGARAPIKTWSRRSTILPQFVGLTFNVYNGRKFVPVSV 62

Query: 107 NEAKVGHKFGEFAFTRKRKPHKTDTGKK 132
           +E  VGHK GEFA TR    H    GK+
Sbjct: 63  SEEMVGHKLGEFAPTRYFPGHADKKGKR 90
[Close]
BLAST of Spo00860.1 vs. TAIR (Arabidopsis)
Match: AT5G47320.1 (ribosomal protein S19)

HSP 1 Score: 112.8 bits (281), Expect = 1.600e-25
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

		  

Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M  R++WK PFVDAFL++    K    N+KIWSRRS+ILPE+V + VRIYNGK+ VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK---KKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 104 NEAKVGHKFGEFAFTRKRKPH 125
            E KVGHKFGEFAFTRK K H
Sbjct: 191 TEGKVGHKFGEFAFTRKVKKH 208
The following BLAST results are available for this feature:
BLAST of Spo00860.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902154914|gb|KNA05857.1|1.7e-45100.hypothetical protein SOVF_1864... [more]
gi|469402881|dbj|BAN04690.1|1.8e-3989.1ribosomal protein S19 [Beta vu... [more]
gi|514724809|ref|XP_004955585.1|1.2e-3054.3PREDICTED: ribosomal protein S... [more]
gi|226528256|ref|NP_001143727.1|2.0e-3070.5uncharacterized protein LOC100... [more]
gi|316996013|dbj|BAD83473.2|2.0e-3072.8ribosomal protein S19 (mitocho... [more]
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BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QF05_SPIOL1.2e-45100.Uncharacterized protein OS=Spi... [more]
A0A0J8BS99_BETVU1.3e-3989.1Uncharacterized protein OS=Bet... [more]
M5AUG4_BETVU1.3e-3989.1Ribosomal protein S19 OS=Beta ... [more]
K4A177_SETIT8.3e-3154.3Uncharacterized protein OS=Set... [more]
B6TC74_MAIZE1.4e-3070.5Putative uncharacterized prote... [more]
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BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RT19_PETHY2.8e-3271.7Ribosomal protein S19, mitocho... [more]
RT19_ARATH2.8e-2466.640S ribosomal protein S19, mit... [more]
RT19_TETSU2.3e-1853.6Ribosomal protein S19, mitocho... [more]
RT19_MARPO3.4e-1759.4Ribosomal protein S19, mitocho... [more]
RS19_SPHWW3.7e-1648.830S ribosomal protein S19 OS=S... [more]
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BLAST of Spo00860.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G47320.11.6e-2566.6ribosomal protein S19[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 106..121
score: 1.8E-14coord: 94..106
score: 1.8E-14coord: 74..93
score: 1.8
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 45..130
score:
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 44..135
score: 2.5
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 47..124
score: 1.3
IPR005732Ribosomal protein S19, bacterial-typeTIGRFAMsTIGR01050TIGR01050coord: 47..130
score: 7.4
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 94..118
scor
IPR023575Ribosomal protein S19, superfamilyGENE3D3.30.860.10coord: 46..131
score: 1.5
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 46..125
score: 1.05
NoneNo IPR availablePANTHERPTHR11880:SF837S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 44..135
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0008080 N-acetyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo006160.71Barchart | Table