Spo00902 (gene) | SpinachBase

Overview


Name	Spo00902
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Secondary thiamine-phosphate synthase enzyme
Location	chr1 : 7941557 .. 7944812 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTACTTTCGTAGTAAACCAACGAAAAGAAAAAGAAAAGAAAATGGAAGTCTAAAACGCTTGTGCCATCGGGACAAAAAACAAAAAGTGTAGAACTTATGATGACGTCAGCTATTCTGGGAGCAAAGCCATTGTTATCGGCTCATCATCGAGTACGAGCGGTTTATACTCCTGCCATTAAACCCTCTTCTTCTTCAATGGCGGCAACAACAACAACTCCAAAATGGGCACAGAAGACCATCACTCTCTCTCCTCACCCTCGTGGCTGCCATCTCATCACCTCTAAGGTTTTTACTTACTCCATTTCCTGCTAATTTCACTGCTATTGTTCCTAATTATCGTACCCACTGATGTTAATTGCTTCTGTTTTAGATTCTATTGTCTTCATTTTCATCTGATTATTTGATTTGAAGAAAAATTTGTTTTATTTATTAGAAGAATTTGTCCAATTACATGCACTTTGAACAAATGATTCTGTGAATTTTTTTGTTTTCGATAAATTTTTTTATACTCCAATTATTGTTTTTTGTTTTCCCGAAAATTGGAGAAATGGGGATTTGATTTAACAAACGTGTCTTACTGGGAAGTTTCTGTAATTTGATTTTGATAAATCTTTTGATCGTCTTCCTATGTTTGTTCAACTAGTTTTCGTTATTCTTAGAACTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAGCATTGAATGTATATGTGCATAGGTATTGTTATTACTTTGAGGAGGATCATCATGTTTGAAAGCTTGTAGTGGTTTCTAGTTCATATAGTTGCCTCGAGAATGGAAAACCATAGCATTTTTGTTGAAGTTTGACAAATTGTTGATGAGGTTCGAAACTTATGCTTAGTCAAGTGGGGTAAACTGATGCAACTCTGAACAACAACTGTCTTCTATTGATCAATGGTTGGAGGATCCAAGGATGAGGCTAGAAGCTTGTGCTACTTCATGTTGGAAAAATGAAGATTCGATCTATTTTATGTTTTAACACAGAAACATGCTTATGGAAGGAGATTGGGTATTGTCTTTAGAAGTATTAGGGTGTAATGTCACAATTGCTTTTTTCCCATCCATTTCACTAGTTTTACTTTGTTTTTTCTAATTCGGTGACTCATGGCCACAATATCTGAATGTTTATATCAGGTACTGAAGGAAATTGAACAAGATTTGTCTGGATTCAGTTGTGGGCTTGCTCATCTTTTCGGTAAGGGTTCCATTTTACATTCAGTAGAGTGAGTACACTCCTCCATTCTTCTGAGTTGAAAGGGCTTTGCTTATAATCACATACTTGTTTGTTCCTTGTAATACTTTAGTGCAACATACTAGTGCTTCCCTGACCATAAATGAAAATTACGACGATGATGTTCGGAAGGACACTGAGACATTTCTAAACAAGGTGGTTCCAGAGGTGAGCATCCATTTGCAAATATAATAGTTGCCATTTGCCATATGGACAGAGGGTATTAACAACATTTTAATATTTTTTCTTCAGGGTAGTTCCGCACCATGGAGGCACACATTGGAAGGTCAGCGTCTAGATTCATTATTTTGAAATTTATAATGCTTCAGATGTTTAGTTTTCCTTTTTCTCGATGAACAAAAAAGTATTTTTCTCGTATAAATGTCATATCAAGAGTAACTGCTGCATCAATATAGTGTTAAGTTTTGCATCAACATCTTCATATGCTAATCATTTTAGAGGGGTAATTTGTTTCTAGTTAAACCCATCATGATTATATGTATGCTCGTGCTCATACCTGATAAGTGGTTTGGAAACCGTTAATCCATTATCACCCGACGTGGCTGGAAAGAAGCCAATGAGGGGCTAAAGAGGCGTTTGGTGTTTCTCGGTGATAGGTTGTCCCCTTTGAGTTAGAATAGCATTGGATTTAATAAACAAGATCTAGGCTAGCACGAATGCACCAAGGGTTAGGTTGTTCAAATATGTCCCTAGAATCCTATTAAAGTTCTTTCAATTGATTTCCTGATGCTATTTACTGTGCTACATCCTCTCAAATCCCATTTCTTTGTAATGCTTCAAGTGTAAGGGAAGGGGCACTTTAGGTAATAGTGTAATACAAATAAGTTGATCATTCTTAGCTTGAGGAGTTGCGGAGGAAGGCTACTAGGAGTTCTTTATAGAGGTCAGTGAGTGGGAAGATTACGATGAATTTGATGAGAAGTTTTTTGTTGTTGTTTTGTTTTAGCTTTGTTTAGGGAATGTCCAGAGCCACTCAAATGTCTGGGATTGTTGCCCCAAATTGATGTTTAATCGCGTCTAGTTATGATCGACTATCGTTTTTTCTCAAATTCCCTCAGTCTCATTATCTTTTCTATATTTCTGATTTCCAGTCTACATTCTATTGGAAAGCAATTCTGGTATACATGGTGCCTCTTGATTTCTCTTAGAGCTCTTTTTGTCCTGCGAACTGTGATGCTTTAAATTAGTTGCTTCTCATCTCTCGTTAACAATTAATGTATTGTCTAGATTATGGTATTGTAAATTCCAATATTTGCAGATTGTTTTATTTGCATTTTTCAAAAATAATTTGGACTTGATTATCTAAAGAAAGACTCTGCTAAGACTTTGCTATGTTGACCTAATGTCTAATTTGGACTCTGCTGGTACCTGAACTGTAAGCTAGAAAGCAATTCTGGTATACATGGGTTTTGAATATCAAATGGTTCATTATTTGATTTGCTAATTGACGCGGAGGAAGCTTTTTTATGTGGTTGCTCAGTGCTGTGATTCGTTTTTTGTAGGGCCTGATGACATGCCAGCACACATCAAGTCATCAATGTTTGGCTGTGCATTGACGTACATTCTCTAATACTCTGAGTTTTCTTTGTTTTGTTTATATCCCTGGGAAGTTCTTGACTTCTTGTTTGTGGTTGTTATACCTTAGTTTCTTGTTTTTTTTTCAGGATTCCAATCACTAATGGACAGCTTAATATGGGAACCTGGCAGGTAACTTTGATTATACTCAAGTTGTTGCATAATTTTTCTGTAGTTTTAGTTTCACACACAAGTAACCATATTAGATTTGCCCTGGGCCTCGAGGAATTTAGAGGGGGATGGGGTGTGGTGTGGAGTATCATGAGAAGATTGCTCTAAGTTGGGTGAGTGGGCAGGAATGTAGATGCAGCAGTCCTGCCAGTGAAATATTGTAG

mRNA sequence

TCGTACTTTCGTAGTAAACCAACGAAAAGAAAAAGAAAAGAAAATGGAAGTCTAAAACGCTTGTGCCATCGGGACAAAAAACAAAAAGTGTAGAACTTATGATGACGTCAGCTATTCTGGGAGCAAAGCCATTGTTATCGGCTCATCATCGAGTACGAGCGGTTTATACTCCTGCCATTAAACCCTCTTCTTCTTCAATGGCGGCAACAACAACAACTCCAAAATGGGCACAGAAGACCATCACTCTCTCTCCTCACCCTCGTGGCTGCCATCTCATCACCTCTAAGGTACTGAAGGAAATTGAACAAGATTTGTCTGGATTCAGTTGTGGGCTTGCTCATCTTTTCGTGCAACATACTAGTGCTTCCCTGACCATAAATGAAAATTACGACGATGATGTTCGGAAGGACACTGAGACATTTCTAAACAAGGTGGTTCCAGAGGGTAGTTCCGCACCATGGAGGCACACATTGGAAGGGCCTGATGACATGCCAGCACACATCAAGTCATCAATGTTTGGCTGTGCATTGACGATTCCAATCACTAATGGACAGCTTAATATGGGAACCTGGCAGGAATGTAGATGCAGCAGTCCTGCCAGTGAAATATTGTAG

Coding sequence (CDS)

ATGATGACGTCAGCTATTCTGGGAGCAAAGCCATTGTTATCGGCTCATCATCGAGTACGAGCGGTTTATACTCCTGCCATTAAACCCTCTTCTTCTTCAATGGCGGCAACAACAACAACTCCAAAATGGGCACAGAAGACCATCACTCTCTCTCCTCACCCTCGTGGCTGCCATCTCATCACCTCTAAGGTACTGAAGGAAATTGAACAAGATTTGTCTGGATTCAGTTGTGGGCTTGCTCATCTTTTCGTGCAACATACTAGTGCTTCCCTGACCATAAATGAAAATTACGACGATGATGTTCGGAAGGACACTGAGACATTTCTAAACAAGGTGGTTCCAGAGGGTAGTTCCGCACCATGGAGGCACACATTGGAAGGGCCTGATGACATGCCAGCACACATCAAGTCATCAATGTTTGGCTGTGCATTGACGATTCCAATCACTAATGGACAGCTTAATATGGGAACCTGGCAGGAATGTAGATGCAGCAGTCCTGCCAGTGAAATATTGTAG

Protein sequence

MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQECRCSSPASEIL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00902.1	Spo00902.1	mRNA

Homology

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BLAST of Spo00902.1 vs. NCBI nr
Match: gi|902204914|gb|KNA15015.1| (hypothetical protein SOVF_102050 [Spinacia oleracea])

HSP 1 Score: 327.4 bits (838), Expect = 1.500e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


		  
Query: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60
           MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI
Sbjct: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60

Query: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120
           TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP
Sbjct: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120

Query: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ
Sbjct: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 159

[Close]

BLAST of Spo00902.1 vs. NCBI nr
Match: gi|731346137|ref|XP_010684296.1| (PREDICTED: UPF0047 protein C4A8.02c [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 271.6 bits (693), Expect = 9.700e-70
Identity = 132/159 (83.02%), Postives = 146/159 (91.82%), Query Frame = 1


		  
Query: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60
           MM S+ILG KPLLS+H R+RAV++P I  +SS+  A +TTPKWAQKTITLSPHPRGCHL+
Sbjct: 1   MMASSILGVKPLLSSH-RIRAVHSPTIDTTSSTSMA-STTPKWAQKTITLSPHPRGCHLV 60

Query: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120
           TSKVLKEI QDLS F CGLAHLF+QHTSASLTINENYD DVR+DTETFLN+VVPEGSSAP
Sbjct: 61  TSKVLKEIGQDLSEFKCGLAHLFLQHTSASLTINENYDADVREDTETFLNRVVPEGSSAP 120

Query: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           W+HTLEGPDDMPAHIKSSMFGCALTIPITNG+LNMGTWQ
Sbjct: 121 WKHTLEGPDDMPAHIKSSMFGCALTIPITNGKLNMGTWQ 157

[Close]

BLAST of Spo00902.1 vs. NCBI nr
Match: gi|731427626|ref|XP_010664048.1| (PREDICTED: uncharacterized protein LOC100252976 isoform X2 [Vitis vinifera])

HSP 1 Score: 243.0 bits (619), Expect = 3.700e-61
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 1


		  
Query: 7   LGAKPLLSAHH-RVRAVYTPAI--KPSSSSMAATTTTPKWAQKTITLSPHPRGCHLITSK 66
           LGAKP L++H  RV+++YTP     P+ S+  A    PKWAQKTITL P  RGCH IT K
Sbjct: 58  LGAKPPLTSHQIRVKSLYTPTSFNDPTDSTSMAAIPAPKWAQKTITLPPQRRGCHHITPK 117

Query: 67  VLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRH 126
           +LKEI QDLSGF CGLAHLF+QHTSASLTINENYD DVR DTETFL+K+VPEG SAPW+H
Sbjct: 118 ILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPEGRSAPWKH 177

Query: 127 TLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQECR 163
           TLEGPDDMPAHIKSSMFGC+LTIPIT+GQLNMGTWQ  R
Sbjct: 178 TLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQAGR 216

[Close]

BLAST of Spo00902.1 vs. NCBI nr
Match: gi|225457713|ref|XP_002277414.1| (PREDICTED: UPF0047 protein C4A8.02c isoform X1 [Vitis vinifera])

HSP 1 Score: 242.3 bits (617), Expect = 6.300e-61
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 1


		  
Query: 7   LGAKPLLSAHH-RVRAVYTPAI--KPSSSSMAATTTTPKWAQKTITLSPHPRGCHLITSK 66
           LGAKP L++H  RV+++YTP     P+ S+  A    PKWAQKTITL P  RGCH IT K
Sbjct: 58  LGAKPPLTSHQIRVKSLYTPTSFNDPTDSTSMAAIPAPKWAQKTITLPPQRRGCHHITPK 117

Query: 67  VLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRH 126
           +LKEI QDLSGF CGLAHLF+QHTSASLTINENYD DVR DTETFL+K+VPEG SAPW+H
Sbjct: 118 ILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPEGRSAPWKH 177

Query: 127 TLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           TLEGPDDMPAHIKSSMFGC+LTIPIT+GQLNMGTWQ
Sbjct: 178 TLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQ 213

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BLAST of Spo00902.1 vs. NCBI nr
Match: gi|729340010|ref|XP_010539742.1| (PREDICTED: UPF0047 protein C4A8.02c [Tarenaya hassleriana])

HSP 1 Score: 237.3 bits (604), Expect = 2.000e-59
Identity = 113/144 (78.47%), Postives = 128/144 (88.89%), Query Frame = 1


		  
Query: 18  RVRAVYTPAIKPSS--SSMAATTTTPKWAQKTITLSPHPRGCHLITSKVLKEIEQDLSGF 77
           RV +V+TPA  PS+  SSMAA +T PKWAQKTITL PH RGCHLIT K++KEI QDLS F
Sbjct: 63  RVSSVFTPA-NPSTDRSSMAAPSTGPKWAQKTITLPPHRRGCHLITPKIVKEIGQDLSEF 122

Query: 78  SCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHI 137
            CGLAH+F+QHTSASLTINENYD DV+ DTETFLN++VPEG+SAPWRHT+EGPDDMPAHI
Sbjct: 123 KCGLAHVFLQHTSASLTINENYDPDVQADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHI 182

Query: 138 KSSMFGCALTIPITNGQLNMGTWQ 160
           KSSMFGC LT+PITNG+LNMGTWQ
Sbjct: 183 KSSMFGCQLTVPITNGKLNMGTWQ 205

[Close]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R682_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102050 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.000e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


		  
Query: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60
           MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI
Sbjct: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60

Query: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120
           TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP
Sbjct: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120

Query: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ
Sbjct: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 159

[Close]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BX91_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163290 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.700e-70
Identity = 132/159 (83.02%), Postives = 146/159 (91.82%), Query Frame = 1


		  
Query: 1   MMTSAILGAKPLLSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLI 60
           MM S+ILG KPLLS+H R+RAV++P I  +SS+  A +TTPKWAQKTITLSPHPRGCHL+
Sbjct: 1   MMASSILGVKPLLSSH-RIRAVHSPTIDTTSSTSMA-STTPKWAQKTITLSPHPRGCHLV 60

Query: 61  TSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAP 120
           TSKVLKEI QDLS F CGLAHLF+QHTSASLTINENYD DVR+DTETFLN+VVPEGSSAP
Sbjct: 61  TSKVLKEIGQDLSEFKCGLAHLFLQHTSASLTINENYDADVREDTETFLNRVVPEGSSAP 120

Query: 121 WRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           W+HTLEGPDDMPAHIKSSMFGCALTIPITNG+LNMGTWQ
Sbjct: 121 WKHTLEGPDDMPAHIKSSMFGCALTIPITNGKLNMGTWQ 157

[Close]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Match: F6I6Y1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00190 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.400e-61
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 1


		  
Query: 7   LGAKPLLSAHH-RVRAVYTPAI--KPSSSSMAATTTTPKWAQKTITLSPHPRGCHLITSK 66
           LGAKP L++H  RV+++YTP     P+ S+  A    PKWAQKTITL P  RGCH IT K
Sbjct: 58  LGAKPPLTSHQIRVKSLYTPTSFNDPTDSTSMAAIPAPKWAQKTITLPPQRRGCHHITPK 117

Query: 67  VLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRH 126
           +LKEI QDLSGF CGLAHLF+QHTSASLTINENYD DVR DTETFL+K+VPEG SAPW+H
Sbjct: 118 ILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPEGRSAPWKH 177

Query: 127 TLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           TLEGPDDMPAHIKSSMFGC+LTIPIT+GQLNMGTWQ
Sbjct: 178 TLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQ 213

[Close]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MLM1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_18113 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.400e-59
Identity = 116/160 (72.50%), Postives = 129/160 (80.62%), Query Frame = 1


		  
Query: 1   MMTSAILGAKPL-LSAHHRVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHL 60
           M TSAI  +KP  + A HR  +         S+SMAAT   PKWAQKT+TL P  RGCHL
Sbjct: 3   MQTSAIFSSKPAWVKAVHRTSST-------DSNSMAATVPAPKWAQKTVTLPPLRRGCHL 62

Query: 61  ITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSA 120
           +TS++LKEI  DLS F CGLAHLF+QHTSASLTINENYD DVR DTETFLNK+VPEG SA
Sbjct: 63  VTSQILKEIRPDLSEFKCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 122

Query: 121 PWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
           PW+HTLEGPDDMPAHIKSSMFGCALTIPIT+G+LNMGTWQ
Sbjct: 123 PWKHTLEGPDDMPAHIKSSMFGCALTIPITDGRLNMGTWQ 155

[Close]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Match: B9R8W5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602560 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.100e-59
Identity = 114/147 (77.55%), Postives = 125/147 (85.03%), Query Frame = 1


		  
Query: 18  RVRAVYTPAIKPSS-----SSMAATTTTPKWAQKTITLSPHPRGCHLITSKVLKEIEQDL 77
           RV ++YT   KPSS     ++  ATT+T KWAQKT+TLSPH RGCHLITSK+L EI  DL
Sbjct: 28  RVNSLYTA--KPSSLTNDSNNSMATTSTSKWAQKTVTLSPHRRGCHLITSKILNEIGSDL 87

Query: 78  SGFSCGLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRHTLEGPDDMP 137
           S F CGLAHLF+QHTSASLTINENYD DVR DTETFLNK+VPEG SAPW+HTLEGPDDMP
Sbjct: 88  SEFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMP 147

Query: 138 AHIKSSMFGCALTIPITNGQLNMGTWQ 160
           AHIKSSMFGC LTIPITNG+LNMGTWQ
Sbjct: 148 AHIKSSMFGCQLTIPITNGKLNMGTWQ 172

[Close]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.800e-30
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 1


		  
Query: 45  QKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVRKD 104
           Q+ ITL    +G ++IT+ ++K++ + L  FS G  + F+QHTSA+LTINEN+D D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 64

Query: 105 TETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQE 161
               L+K+VPE  SA +RHT EG DDMPAH+KSS+ G +LT+PITNG+L++GTWQ+
Sbjct: 65  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQD 117

[Close]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.500e-27
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 1


		  
Query: 43  WAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVR 102
           W QKT+TLS   RG HL+T ++L ++  D+   + GL HL +QHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 103 KDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
            D E F  + VP+  +  + H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 62  HDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

[Close]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.500e-27
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 1


		  
Query: 43  WAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVR 102
           W QKT+TLS   RG HL+T ++L ++  D+   + GL HL +QHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 103 KDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
            D E F  + VP+  +  + H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 62  HDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

[Close]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.600e-26
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 1


		  
Query: 43  WAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVR 102
           W Q+TITLS  PRG HLIT ++  ++   L     GL HL + HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 103 KDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
            D E    K VP+  +A + H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 62  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

[Close]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.600e-26
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 1


		  
Query: 43  WAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSCGLAHLFVQHTSASLTINENYDDDVR 102
           W Q+TITLS  PRG HLIT ++  ++   L     GL HL + HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 103 KDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKSSMFGCALTIPITNGQLNMGTWQ 160
            D E    K VP+  +A + H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 62  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

[Close]

BLAST of Spo00902.1 vs. TAIR (Arabidopsis)
Match: AT1G21065.1 (unknown protein)

HSP 1 Score: 223.8 bits (569), Expect = 8.200e-59
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1


		  
Query: 18  RVRAVYTPAIKPSSSSMAATTTTPKWAQKTITLSPHPRGCHLITSKVLKEIEQDLSGFSC 77
           RVR+V TPA   +  +  A+++  KWAQKTITL P  RGCHLIT K+LKEI +DLS F+C
Sbjct: 53  RVRSVLTPANPATDRASMASSSGAKWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNC 112

Query: 78  GLAHLFVQHTSASLTINENYDDDVRKDTETFLNKVVPEGSSAPWRHTLEGPDDMPAHIKS 137
           GLAH+F+QHTSASLTINENYD DV+ DTETFLN++VPEG+SAPWRHT+EGPDDMPAHIKS
Sbjct: 113 GLAHVFLQHTSASLTINENYDPDVQADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKS 172

Query: 138 SMFGCALTIPITNGQLNMGTWQ 160
           SMFGC LTIPIT G+L+MGTWQ
Sbjct: 173 SMFGCQLTIPITKGKLSMGTWQ 194

The following BLAST results are available for this feature:

BLAST of Spo00902.1 vs. NCBI nr
BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
BLAST of Spo00902.1 vs. TAIR (Arabidopsis)

BLAST of Spo00902.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902204914\|gb\|KNA15015.1\|	1.5e-86	100.	hypothetical protein SOVF_1020...	[more]
gi\|731346137\|ref\|XP_010684296.1\|	9.7e-70	83.0	PREDICTED: UPF0047 protein C4A...	[more]
gi\|731427626\|ref\|XP_010664048.1\|	3.7e-61	74.2	PREDICTED: uncharacterized pro...	[more]
gi\|225457713\|ref\|XP_002277414.1\|	6.3e-61	75.0	PREDICTED: UPF0047 protein C4A...	[more]
gi\|729340010\|ref\|XP_010539742.1\|	2.0e-59	78.4	PREDICTED: UPF0047 protein C4A...	[more]

BLAST of Spo00902.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R682_SPIOL	1.0e-86	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BX91_BETVU	6.7e-70	83.0	Uncharacterized protein OS=Bet...	[more]
F6I6Y1_VITVI	4.4e-61	75.0	Putative uncharacterized prote...	[more]
A0A0B0MLM1_GOSAR	2.4e-59	72.5	Uncharacterized protein OS=Gos...	[more]
B9R8W5_RICCO	4.1e-59	77.5	Putative uncharacterized prote...	[more]

BLAST of Spo00902.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
YE72_SCHPO	9.8e-30	53.4	UPF0047 protein C4A8.02c OS=Sc...	[more]
YJBQ_ECO57	3.5e-27	49.5	UPF0047 protein YjbQ OS=Escher...	[more]
YJBQ_ECOLI	3.5e-27	49.5	UPF0047 protein YjbQ OS=Escher...	[more]
YJBQ_SALTI	6.6e-26	50.4	UPF0047 protein YjbQ OS=Salmon...	[more]
YJBQ_SALTY	6.6e-26	50.4	UPF0047 protein YjbQ OS=Salmon...	[more]

BLAST of Spo00902.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G21065.1	8.2e-59	73.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001602	Uncharacterised protein family UPF0047	GENE3D	2.60.120.460		coord: 35..160 score: 5.6
IPR001602	Uncharacterised protein family UPF0047	PFAM	PF01894	UPF0047	coord: 60..160 score: 5.5
IPR001602	Uncharacterised protein family UPF0047	TIGRFAMs	TIGR00149	TIGR00149	coord: 46..160 score: 9.8
IPR001602	Uncharacterised protein family UPF0047	unknown	SSF111038	YjbQ-like	coord: 43..160 score: 2.35
None	No IPR available	PANTHER	PTHR30615	UNCHARACTERIZED PROTEIN YJBQ-RELATED	coord: 18..159 score: 5.9E
None	No IPR available	PANTHER	PTHR30615:SF1	SUBFAMILY NOT NAMED	coord: 18..159 score: 5.9E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16925	0.66	Barchart \| Table