Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAATAGGAGTAAAACATAGGGACAAGAATAAAGGTTAAAAAATGGTAAAGGGGACCTAAGCAATACTGTACCACCAGTCACCACCACACTCCACACTCCACACCCCACCATAGTTCATCCCCAATTCCTCCCTTCTTTCTTCTTTCTCTTTAATCTATTCTTCCTTTTATAAAATTTGTGTTAATTTGACCATCTTTTTCCCTCATTCGTCTGTCAATTTCTTTTTCTTTAGTCTCTGCAGTCTGCTTACATAAAACTTCCAAAACCTCCCATGAAATTCAAATTCCACTTTCTTGAAATTAATCTCCTTTGTCTTTGTCTGGTCTTTATTTTGGGTTTCAAATTCCTAAAATGAGGAAACCGAAACCCCACTTTTTCACTTAAATAAAAACCCACCACTCCTCCCTCCTCTGTACTCCACTCCACTGTTCTTATTTTATACACTTTCACACTCTTTGGGGAGAGAGACAGAAACCAAAAAATGGGTAGAGAATCAGCAGAAATTTCTGCTTCTTCTAAGCTCAAAAAAGTAGCTAAGAAGCTCCTCTTCCTTAATTGTTGCTCAGCCTCAACAACCGTCGCCAGCGGTAGCTCCCGCGGCGGCACAAGCTTTAATTCCGTAAGTTTTCCTCCACTCTCCGCCCCTCAATTTTGAGCGATTCTAGTAAAATTGGATTGAATTTTGATTTTTGTTGGTGAAATGCAGAATGTGGGGCCCGGTCAAGAAGCAGAATTGGGGTGTTGTTCGCCTCCGAAAGAAGCTCTGAATTATTTGTCAGAGATGGAAGTGGAAGAAGAATATGTACCCAGTGTCTCATCTAAGGTAAACTAACCTTTTCCTTTTTTATTTTTTTTATTTTTTATTTTTTATTTTATAAATCGTGAATTAATTGTTTGCTTCTTATTAGAGTTTCATGAAGGAAATAGGAATATTTTTGTTTAATTTTTATTTTTACTCTGCACTGAGTTTATATTAATGTTAAATTTCCTTTTTTATTTAATAAAAAATGCTAAATCTACCATTTATTCCATTTAAAGTAAAATAAGCTAAAGTGGAATTAATGAGAAGAAAGGGATGATACTATTTGAATTTATGTCTACAATTTTGTTATTGTAGGAGTATTTCTTTAAATTTGTGTGTTGGGAAGATTTTGTCAAACGAAACAAAATGCAACTTTTTTTTTTGTACCTGTAATATTTTTACACCTACAAAATGTACAATTCAGTATGTTTTTGATTTCAATGTGGGATGAACATGATTTAATTAGGTTTCAAATCATACTAGTTTCATGCCATTATATGCGCCCTTTCTGTAGTCGAAACCTGAGCCGTTGTCGTGTCCTTGGTTCATCATTATCAACCTTCCAAATGCAGAGAGTAAGTACCTGGCTGTCTGATAGTGCCATTACTGTGGTTACAAACATGCTTCAACCTTGGGCATGTAGTTACAGCTTGCCATATGAGAAACGAGTCATATGACACCCAGAAATAAATATGATGTGGTTCTTCAGCTTGGATGAGCCTTATTTGAGTACTAAATTGATTGTTAAGCATCTGAAATATTTGTGACTTCGACTGTGGAGAACAACATTTTTGGATTAAACTTGTAACTTGTAAGGGTTCGGGATTCCACCCAATGTGCTTTCTGTACCCATGCTGAATTACATATTCAGCAGTTTAACTGAACATGGATACTTCAGCGATAATAGTTAGAACATACTCGAGAAAGAACAGTGGTATACATATGGTATAACCGTATAACTCAAGTGATGCGTGGTTGACATGAAAAACCATGGGAAGTATGACTTCCTAGGAAGTGGAAGATTACATGGGTAGTCGCACTTCCTAGGAAGTAGAACTTCCTACAAAATGGAGGAAGTTGCTTACCTAGGTTCCCCTAGGTAAGTGGAACTTCCCGTGGGAATTTACTTACCATATTTAACCAAACAATATCGCCCACTTCCTAGGAAATGCTTATACATGGAAAAAGCTTCTTCCTAGTAAGTTCTACTTCCCACGATCAACCAAATGACCCCTCAACAGGTTCAAGCAACAGAGGAATCCCCCCCTCCCTAATAAAAAACAATTGTGCTTTTACTAAGTTTGTTTGAACAGGGCTGCAATTTCTCTTTTGGTGCGGGGGGCAATGCCAATGTGGGTAGGAGGTCATATCTCCCAAACTGGTCCAACGTATACCTGTAACAGTAACAACCTACATTTGAAGGAACTGTATCTCTCACTACTGAATGCAACAAGTGAAATGACTGAAAATCTAGTGTCTTTAAAGATCATATATGTTCTTCTAGCGTTCCAGTTATTGAAAAATGTAGTACCTCTGAAGGTGATAAAACATGAAAGATAGGACCTATTCTCGAATCTGTACATGCTAGTTTTCCCTCCCTACTTGATAGTTGGTACTACCATGGAAACACAACATATATTTGAGTCAGAGATGTTGCACATTGTCCAATCTTTATATCTTCCATAAAGTTCCATAATTATCGTACCTTAAAATGATTTAGTCATGCAATTTATGTGTTTTCTGCTTATGCTGCGTACATCTTGTTAGTCTGCATGCTAGCTGTGTCTAATGCAGTTTCTGTAATGATGTCTATTACAAGTATTTTGTGTTACATTTATAAAGACATGTACAAAGCAAGCTAATATTGTTTTTTGTTTTTGACATGGCAGAATGTATGCACAATATGTCTTGAACCATTGCTCAACAGTAGCTACACATCATCAAGTAGCCCTGGAAAAGCAATATTTACTTCCCAATGCTCTCATTCATTCCATCTATCATGTATCTCCTCAAATATTCGGCACGGAAGCATAAACTGTCCAGTTTGTCGTGCACAATGGACACGCTTACCTCGCACCTTACATCCACCTTGTTGGCTCCCCCGTAACCAAGATGATCCTATCATTCGCATACTTGATGATTCCATCTCCACATTTCGGGTCCATAGACGGTCTTTTCTTCGCACTGCTCGCTACAATGATGATGATCCTGTGTCCCCTGAGGCGGCTCACTCTTCTTGCCAGCCACGTCTTTGCTTCAATCTTGTCCCATTGGACGAACACTTGATGAGTACTGGTTCACTGTCATCACCCTGGTACAAACGTAAGAGATCAGCATATCTATGTGTTAGGTTAGCTCCTCTACAAGCAATAGATTTAGTAGTGGTTGCCACCCCAAACGGTCCTCATTTAAGGCTCCTTAAGCAATCAATAGCACAAGTGGTATTCTCCTTACGGGCTGTAGATAGATTAGCAATAGTGAGTTACTCTTCTGCTGCAGCCCGCATCTTCCCACTCAGACGCATGACAACCTATGGCAAGAAAGCAGCACTTCAAGTCATTGATCGGCTATTCTACGCTGGACATGCCGACCCTGTGGAAGGACTCAGAAAAGGTATTAAAATTCTAAAGGATCGTACTCATGAAAACCCGTTTTCCTCCATGCTACACTTATCTGATTATCCAAACGGACCCACAAGTAGTAGATATCACAGCACCATAAATGACATAGAAAGGAGCATGCCTTTTCCTATCTGTGTACATCAGTTTCATGTAGCAGGTTCAACAAACTCAATCATGCATCAGCTTGAAGAATTCTTAAGAAGGTTACTGGGTGGTCTGATACAGGAAGTTCAGCTGAGGATAGGTAGTAGTGACCATGAGGAAGATGGAAGAATAGTTAGGCTCGGGGAGCTAAGAGGTGACGAGGAGAGAAGAGTTCTCATCGAAGTAGATGATCATGCCTGCTGCATTGGATACAGCTATGTTGAGGGTGGGATGAGTGTTATTGATGAGCGAATAAGAGTAGGCGAAGTGGTGGTTAGTATTGGAGACACCGATGATGGGGCGGAAGTAGCAACCATCACCGATGGGCCACGAAGTAGCTGTGTTGATAGTTGGGATTATCATGACCCTTACATGGCTAGGAGATGGGCTAAGAGATTGCATGAAAGGCACAGGATATAATGTATCTTCACTGTTGTATATCTATTCTGTATTTACCTCATGAACACCTCTTTTTTCTTTTTTAAGCTTATTTTTATTTTTAATTTTTTTGTATTCACAAAGATTAATTCCATTTACAGATGTATTTGTTCAATTACTGATATATTCATTACCATTATTTTTTTTATTCATTTAAGTAGTGTTGAGTCACCTCCAACTGCAGGATTCGGTGCTAAAA GTAATAGGAGTAAAACATAGGGACAAGAATAAAGGTTAAAAAATGGTAAAGGGGACCTAAGCAATACTGTACCACCAGTCACCACCACACTCCACACTCCACACCCCACCATAGTTCATCCCCAATTCCTCCCTTCTTTCTTCTTTCTCTTTAATCTATTCTTCCTTTTATAAAATTTGTGTTAATTTGACCATCTTTTTCCCTCATTCGTCTGTCAATTTCTTTTTCTTTAGTCTCTGCAGTCTGCTTACATAAAACTTCCAAAACCTCCCATGAAATTCAAATTCCACTTTCTTGAAATTAATCTCCTTTGTCTTTGTCTGGTCTTTATTTTGGGTTTCAAATTCCTAAAATGAGGAAACCGAAACCCCACTTTTTCACTTAAATAAAAACCCACCACTCCTCCCTCCTCTGTACTCCACTCCACTGTTCTTATTTTATACACTTTCACACTCTTTGGGGAGAGAGACAGAAACCAAAAAATGGGTAGAGAATCAGCAGAAATTTCTGCTTCTTCTAAGCTCAAAAAAGTAGCTAAGAAGCTCCTCTTCCTTAATTGTTGCTCAGCCTCAACAACCGTCGCCAGCGGTAGCTCCCGCGGCGGCACAAGCTTTAATTCCAATGTGGGGCCCGGTCAAGAAGCAGAATTGGGGTGTTGTTCGCCTCCGAAAGAAGCTCTGAATTATTTGTCAGAGATGGAAGTGGAAGAAGAATATGTACCCAGTGTCTCATCTAAGAATGTATGCACAATATGTCTTGAACCATTGCTCAACAGTAGCTACACATCATCAAGTAGCCCTGGAAAAGCAATATTTACTTCCCAATGCTCTCATTCATTCCATCTATCATGTATCTCCTCAAATATTCGGCACGGAAGCATAAACTGTCCAGTTTGTCGTGCACAATGGACACGCTTACCTCGCACCTTACATCCACCTTGTTGGCTCCCCCGTAACCAAGATGATCCTATCATTCGCATACTTGATGATTCCATCTCCACATTTCGGGTCCATAGACGGTCTTTTCTTCGCACTGCTCGCTACAATGATGATGATCCTGTGTCCCCTGAGGCGGCTCACTCTTCTTGCCAGCCACGTCTTTGCTTCAATCTTGTCCCATTGGACGAACACTTGATGAGTACTGGTTCACTGTCATCACCCTGGTACAAACGTAAGAGATCAGCATATCTATGTGTTAGGTTAGCTCCTCTACAAGCAATAGATTTAGTAGTGGTTGCCACCCCAAACGGTCCTCATTTAAGGCTCCTTAAGCAATCAATAGCACAAGTGGTATTCTCCTTACGGGCTGTAGATAGATTAGCAATAGTGAGTTACTCTTCTGCTGCAGCCCGCATCTTCCCACTCAGACGCATGACAACCTATGGCAAGAAAGCAGCACTTCAAGTCATTGATCGGCTATTCTACGCTGGACATGCCGACCCTGTGGAAGGACTCAGAAAAGGTATTAAAATTCTAAAGGATCGTACTCATGAAAACCCGTTTTCCTCCATGCTACACTTATCTGATTATCCAAACGGACCCACAAGTAGTAGATATCACAGCACCATAAATGACATAGAAAGGAGCATGCCTTTTCCTATCTGTGTACATCAGTTTCATGTAGCAGGTTCAACAAACTCAATCATGCATCAGCTTGAAGAATTCTTAAGAAGGTTACTGGGTGGTCTGATACAGGAAGTTCAGCTGAGGATAGGTAGTAGTGACCATGAGGAAGATGGAAGAATAGTTAGGCTCGGGGAGCTAAGAGGTGACGAGGAGAGAAGAGTTCTCATCGAAGTAGATGATCATGCCTGCTGCATTGGATACAGCTATGTTGAGGGTGGGATGAGTGTTATTGATGAGCGAATAAGAGTAGGCGAAGTGGTGGTTAGTATTGGAGACACCGATGATGGGGCGGAAGTAGCAACCATCACCGATGGGCCACGAAGTAGCTGTGTTGATAGTTGGGATTATCATGACCCTTACATGGCTAGGAGATGGGCTAAGAGATTGCATGAAAGGCACAGGATATAATGTATCTTCACTGTTGTATATCTATTCTGTATTTACCTCATGAACACCTCTTTTTTCTTTTTTAAGCTTATTTTTATTTTTAATTTTTTTGTATTCACAAAGATTAATTCCATTTACAGATGTATTTGTTCAATTACTGATATATTCATTACCATTATTTTTTTTATTCATTTAAGTAGTGTTGAGTCACCTCCAACTGCAGGATTCGGTGCTAAAA ATGGGTAGAGAATCAGCAGAAATTTCTGCTTCTTCTAAGCTCAAAAAAGTAGCTAAGAAGCTCCTCTTCCTTAATTGTTGCTCAGCCTCAACAACCGTCGCCAGCGGTAGCTCCCGCGGCGGCACAAGCTTTAATTCCAATGTGGGGCCCGGTCAAGAAGCAGAATTGGGGTGTTGTTCGCCTCCGAAAGAAGCTCTGAATTATTTGTCAGAGATGGAAGTGGAAGAAGAATATGTACCCAGTGTCTCATCTAAGAATGTATGCACAATATGTCTTGAACCATTGCTCAACAGTAGCTACACATCATCAAGTAGCCCTGGAAAAGCAATATTTACTTCCCAATGCTCTCATTCATTCCATCTATCATGTATCTCCTCAAATATTCGGCACGGAAGCATAAACTGTCCAGTTTGTCGTGCACAATGGACACGCTTACCTCGCACCTTACATCCACCTTGTTGGCTCCCCCGTAACCAAGATGATCCTATCATTCGCATACTTGATGATTCCATCTCCACATTTCGGGTCCATAGACGGTCTTTTCTTCGCACTGCTCGCTACAATGATGATGATCCTGTGTCCCCTGAGGCGGCTCACTCTTCTTGCCAGCCACGTCTTTGCTTCAATCTTGTCCCATTGGACGAACACTTGATGAGTACTGGTTCACTGTCATCACCCTGGTACAAACGTAAGAGATCAGCATATCTATGTGTTAGGTTAGCTCCTCTACAAGCAATAGATTTAGTAGTGGTTGCCACCCCAAACGGTCCTCATTTAAGGCTCCTTAAGCAATCAATAGCACAAGTGGTATTCTCCTTACGGGCTGTAGATAGATTAGCAATAGTGAGTTACTCTTCTGCTGCAGCCCGCATCTTCCCACTCAGACGCATGACAACCTATGGCAAGAAAGCAGCACTTCAAGTCATTGATCGGCTATTCTACGCTGGACATGCCGACCCTGTGGAAGGACTCAGAAAAGGTATTAAAATTCTAAAGGATCGTACTCATGAAAACCCGTTTTCCTCCATGCTACACTTATCTGATTATCCAAACGGACCCACAAGTAGTAGATATCACAGCACCATAAATGACATAGAAAGGAGCATGCCTTTTCCTATCTGTGTACATCAGTTTCATGTAGCAGGTTCAACAAACTCAATCATGCATCAGCTTGAAGAATTCTTAAGAAGGTTACTGGGTGGTCTGATACAGGAAGTTCAGCTGAGGATAGGTAGTAGTGACCATGAGGAAGATGGAAGAATAGTTAGGCTCGGGGAGCTAAGAGGTGACGAGGAGAGAAGAGTTCTCATCGAAGTAGATGATCATGCCTGCTGCATTGGATACAGCTATGTTGAGGGTGGGATGAGTGTTATTGATGAGCGAATAAGAGTAGGCGAAGTGGTGGTTAGTATTGGAGACACCGATGATGGGGCGGAAGTAGCAACCATCACCGATGGGCCACGAAGTAGCTGTGTTGATAGTTGGGATTATCATGACCCTTACATGGCTAGGAGATGGGCTAAGAGATTGCATGAAAGGCACAGGATATAA MGRESAEISASSKLKKVAKKLLFLNCCSASTTVASGSSRGGTSFNSNVGPGQEAELGCCSPPKEALNYLSEMEVEEEYVPSVSSKNVCTICLEPLLNSSYTSSSSPGKAIFTSQCSHSFHLSCISSNIRHGSINCPVCRAQWTRLPRTLHPPCWLPRNQDDPIIRILDDSISTFRVHRRSFLRTARYNDDDPVSPEAAHSSCQPRLCFNLVPLDEHLMSTGSLSSPWYKRKRSAYLCVRLAPLQAIDLVVVATPNGPHLRLLKQSIAQVVFSLRAVDRLAIVSYSSAAARIFPLRRMTTYGKKAALQVIDRLFYAGHADPVEGLRKGIKILKDRTHENPFSSMLHLSDYPNGPTSSRYHSTINDIERSMPFPICVHQFHVAGSTNSIMHQLEEFLRRLLGGLIQEVQLRIGSSDHEEDGRIVRLGELRGDEERRVLIEVDDHACCIGYSYVEGGMSVIDERIRVGEVVVSIGDTDDGAEVATITDGPRSSCVDSWDYHDPYMARRWAKRLHERHRI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00925.1 vs. NCBI nr
Match: gi|902228099|gb|KNA20966.1| (hypothetical protein SOVF_047560 [Spinacia oleracea]) HSP 1 Score: 1041.2 bits (2691), Expect = 6.100e-301 Identity = 516/516 (100.00%), Postives = 516/516 (100.00%), Query Frame = 1
BLAST of Spo00925.1 vs. NCBI nr
Match: gi|731346089|ref|XP_010684270.1| (PREDICTED: uncharacterized protein LOC104898855 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 732.6 bits (1890), Expect = 4.600e-208 Identity = 404/555 (72.79%), Postives = 446/555 (80.36%), Query Frame = 1
BLAST of Spo00925.1 vs. NCBI nr
Match: gi|731346091|ref|XP_010684271.1| (PREDICTED: uncharacterized protein LOC104898855 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 709.9 bits (1831), Expect = 3.200e-201 Identity = 382/512 (74.61%), Postives = 422/512 (82.42%), Query Frame = 1
BLAST of Spo00925.1 vs. NCBI nr
Match: gi|566207883|ref|XP_006373553.1| (hypothetical protein POPTR_0016s00330g [Populus trichocarpa]) HSP 1 Score: 486.1 bits (1250), Expect = 7.500e-134 Identity = 280/555 (50.45%), Postives = 369/555 (66.49%), Query Frame = 1
BLAST of Spo00925.1 vs. NCBI nr
Match: gi|743893705|ref|XP_011040093.1| (PREDICTED: uncharacterized protein LOC105136442 [Populus euphratica]) HSP 1 Score: 484.6 bits (1246), Expect = 2.200e-133 Identity = 279/555 (50.27%), Postives = 368/555 (66.31%), Query Frame = 1
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN64_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047560 PE=4 SV=1) HSP 1 Score: 1041.2 bits (2691), Expect = 4.200e-301 Identity = 516/516 (100.00%), Postives = 516/516 (100.00%), Query Frame = 1
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1X8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163170 PE=4 SV=1) HSP 1 Score: 732.6 bits (1890), Expect = 3.200e-208 Identity = 404/555 (72.79%), Postives = 446/555 (80.36%), Query Frame = 1
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BY51_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163170 PE=4 SV=1) HSP 1 Score: 709.9 bits (1831), Expect = 2.200e-201 Identity = 382/512 (74.61%), Postives = 422/512 (82.42%), Query Frame = 1
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Match: U5FK12_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00330g PE=4 SV=1) HSP 1 Score: 486.1 bits (1250), Expect = 5.300e-134 Identity = 280/555 (50.45%), Postives = 369/555 (66.49%), Query Frame = 1
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Match: D7T5S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0475g00020 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 9.900e-133 Identity = 278/522 (53.26%), Postives = 347/522 (66.48%), Query Frame = 1
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Match: AT5G60710.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 143.3 bits (360), Expect = 4.200e-34 Identity = 127/438 (29.00%), Postives = 199/438 (45.43%), Query Frame = 1
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Match: AT1G08050.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 134.4 bits (337), Expect = 2.000e-31 Identity = 101/327 (30.89%), Postives = 157/327 (48.01%), Query Frame = 1
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Match: AT2G38970.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 134.0 bits (336), Expect = 2.600e-31 Identity = 111/364 (30.49%), Postives = 168/364 (46.15%), Query Frame = 1
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Match: AT5G65683.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 111.7 bits (278), Expect = 1.400e-24 Identity = 117/440 (26.59%), Postives = 202/440 (45.91%), Query Frame = 1
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Match: AT4G37890.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 92.4 bits (228), Expect = 8.600e-19 Identity = 68/223 (30.49%), Postives = 124/223 (55.61%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00925.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00925.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00925.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo00925.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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