Spo00934 (gene)

Overview
NameSpo00934
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionZinc finger protein LSD1
Locationchr6 : 380520 .. 384164 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACAATTAGCTTATTATGCCACATAAGATTTCAAGCTATTTTATTGTCTAGCTAATTTGTGCCCCAATGGCTAGCAACTAGCTTGTTATTTAAATTTATTCCACTTGTCCACTTGTCAATTAATTATTTGGCAATTTTGAGAGCTAGTTGTCAAGCAAATTAGCTTGTTTAAGCTAATTTGCTTGGCAAAGCTAATTTGTTATTTTCACTCCAATGGTCTAGCTATTAGCTTGAAACTTTTATAAATTTCAAGCTAGTCCCTAGCTACAACCATTGGAGATGCTCTAAAATTTGTTAGGTTCAAATGATACATCAATTATAAAAAGATTGGAAATTGCGAAAATCAGGGGTAATTTTTTAAAGAATGGATGAAGAAATAGGAGATACTCTCCTGACTGAAGTGCAGCACCATTCGCCACTGCCACCGCCGCCACAAGAACAACCAAGAGAAGTAGAAAAAGAACAGCTAAAAGAAGAAGGTGATACTCCACAGACAGAAAAGCAACACCATTCAACCTCACTATCACCGCCGCCATCACCACCAACCCCGCAAGAACAGCCAAAAGGAGAAGAAAACGAACAACCCCAATTGAAAGAAGAAGAAACCGAACAACTCCAGTCGAAAGAGGAAGATGGGAAAGAAAATCACAAAGAAAATGATTGTGGAGGAGAACAGGTAGAAATTGAAGAAGGGGAAGTGAGTAAATCCAATGAACCAGGAAAAGAACATGAAAAAATGGAAGAACTTGTAGGTAATGATGAAGAAGAAGGTCCGCCGCCTGGTTGGGATGCGTTGCCGTCACCTCCGCCACTACCTCCGTCCTCTCAACCGGGTTCGTTGCTTCCACTTTTGTCTTTTTTTTATTTGAAAGGGTATTATAGTAAAACATGAATCTGAAACTGAAAAAGTTGGATTTTTTTAATTTGAAATGGTATTATAGTAAAACCGTAAATTTAATGGTATTATAGTAAAACCGTAAATTTTCACTGAAGTTAAAAAATTGGAAAAAAAAAATGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACTGAGCTATCCCCGCTTCATGTTATTATGTGGTTTCACATTATTATATTTACGGTAATCTTTATTATTATTTTTTTTTTTGTTTAATAGCATAATGGTGTAAAGTAATCTTTACTTTTACAAAATACGGAGCAAAAACAGTGAAAGATTTAATGCTGCTAGTATAATGAAATAAAATTAAAATATAGTAGTTTCTATATGAGTTATACAATTTTTTTTTCTGATTAATTCTATCGATGCCTCTTTCGTAGGTGATAATCAATTTTACTGGACATTGTTGGCTTGTTGCATTTGTGATAATCAATTTTACTTATCCGGAACTGAAGGTTAATAGTCAAAGTTGCATATTGGATACCAAACAAAATAAAAATTGGAACGTCTTAATAAAACAGGGGGAGTAGTAGAATTCTTTGCAGCCAAAATCAGGTTTGGATATCTGTGTTACAAAGAAACATACTGTCCACATTTTCATGAATTGGTGAAAATAATAAATGTGGATAGTATTTGGTAAAAATGTTGAGATGATAGTAGTGTTTATCAATCCAAATTTCAGATTACGCCTTATGTTTTCAAAATATTGTCATATCATCAAGCTTATGTTGAAGATGTTCACTCACTTAGTAATTGGTAAAAAGTGGCTTGGGTTTGAACTTTCGGTTGCATACTTGCATCATCATAAAGCAATGTCGACAATGTACAATAAATTTATTGTGCGTGCTAGACCTTTTGATTAGAATGCGTTGATAGTTAATGCAGTAATTCCTTAAGGGTAGTTTTCAAGGATCAAAACATTCCAACTCACAGAAAAACCACCACAGCCACTTCTACATCATAACTACAGTAAAAAACACTTAGCAGCTCGTTTCTACTTCTGAATTACTAATATTCAGTACTAATTATGTTACATCGTGTCAGGCTAATGTTAGCTATATAACAATAGCAAACATAATACATAATGTTTAGTATGTTCATTACTGCATTTATGCTTAAGTTTGGTTACTGTGAATCTTTCTCCCTGTATGCGTTAATCTGTGAGGATATAGCTGTAGAGAGTCTTGAATGAGTTTGAAGGGTTTAAGTTAGTCTACTGTGAATATTTGGATGGCAATCTCTATCCATTTTGTACCCAATTAGAAACGTGGAATGAATACTTACTGGCTTTTTTTTTGTTTGTTTACATCTATAGATCCATGTCACAATGTAATGTTTCTGAAAAATGCGGCCTAGATATGTTAGTTTTTCTCTAGGAAAAGCATGGTCGGGTGGATATCATAGGTATTACGGAGTGGTCTTTAAATTTATCTAGGTTTCTTGATTACCGAGTTCTCTTCATTAGGTACTTTGAGCCTTATGGAACCAGCTTTTGATATATGAAATAACATTGACATTTAACACAACCCGGCCTTTTACAACTCTTCAGATTTCATATTGTAGGCACTTCTACATCATAACTGCAGTCAAAATCATTTGCAGCACTTTTCTGGTTCTGAATTCCCGATATACACTACTAGCTATGTTACATCGTGTCAGGTGCATACAATAACATTCAAATACATAATGTTAACTATTGCATTTTATGCTGAAGTTAATCTTTCTCCCTATCTACATTAATTTGTGGGAATTGGCACAAACTTAACTACCTAACGTGCGTTAAGGAAACCAAAGTTTGATCATCTGATGTTTGATTCTCCAGACAGTGATATTGCTTCTTTAAAGTATTACTCGTAGTTTGTGTTGCGCTCAATATAAGTTTTATTAATAACATATCAATATTCTTAATAGTGAGAAACCAAACTTTGTAATGCAGAAAGGGGTCAAATGGTTTGCGGTTCCTGTCGCCATCTCCTTTCTTATCCCCAAGGAGCCAAGCATGTCCAATGCTCATGCTGCCAGACAGTGAACTATGTACTTGAAGGTTCTTTGTTGCTCTACAACCCATGCATTATAATCTAATTCAATCTAGTTTCTATTTTAATGTGAACTTTATTAGTTTTATGATACTTTTTCAGAGCATGAAGTCGGACAAGTGAAGTGTGGAAACTGTCAACTGCTTCTGATGTACCCTTACGGAGCTCAATCTGTTCGATGTTTCTCTTGCAGTTCTGTCATTTACATCGGAGTATGTACTTCTTCTGTCACCCCGGTAATCCAAGCTAGTATCTTTAGAAACTGCACTTTTGCATTTGAGAAAATCTGTTAACTGCAGTCTGCAACAATCATGTAGCGACGTATTATTCACATTTCACTTACTCTATTTCTATCCGTTTTACGTTTCTACAGGATCATAACAGGCGTCCTCCACTGTCAGTACAGCAGAGCCAAGCTTGCCGACCTTTTAGCATTTCTCACTGAGGACTCGTATATTTTTTTTTCTTTTAACTCTTTTTTTCCCTTTCTAAAATGTAATTCCAAGGGCTACATTAATTGCATTAGATTGAACTATTGAAGTAGCAGTTAGCAGATGTTGCGTAATGCGGGAATTCAACATTGTATTCAGGCAAAATGTAGCCTACTTTCAATGACAAACTGAGAAATTATTTCTACATTGCAATTGATTACTTTATGCTTTGAC

mRNA sequence

TGACAATTAGCTTATTATGCCACATAAGATTTCAAGCTATTTTATTGTCTAGCTAATTTGTGCCCCAATGGCTAGCAACTAGCTTGTTATTTAAATTTATTCCACTTGTCCACTTGTCAATTAATTATTTGGCAATTTTGAGAGCTAGTTGTCAAGCAAATTAGCTTGTTTAAGCTAATTTGCTTGGCAAAGCTAATTTGTTATTTTCACTCCAATGGTCTAGCTATTAGCTTGAAACTTTTATAAATTTCAAGCTAGTCCCTAGCTACAACCATTGGAGATGCTCTAAAATTTGTTAGGTTCAAATGATACATCAATTATAAAAAGATTGGAAATTGCGAAAATCAGGGGTAATTTTTTAAAGAATGGATGAAGAAATAGGAGATACTCTCCTGACTGAAGTGCAGCACCATTCGCCACTGCCACCGCCGCCACAAGAACAACCAAGAGAAGTAGAAAAAGAACAGCTAAAAGAAGAAGGTGATACTCCACAGACAGAAAAGCAACACCATTCAACCTCACTATCACCGCCGCCATCACCACCAACCCCGCAAGAACAGCCAAAAGGAGAAGAAAACGAACAACCCCAATTGAAAGAAGAAGAAACCGAACAACTCCAGTCGAAAGAGGAAGATGGGAAAGAAAATCACAAAGAAAATGATTGTGGAGGAGAACAGGTAGAAATTGAAGAAGGGGAAGTGAGTAAATCCAATGAACCAGGAAAAGAACATGAAAAAATGGAAGAACTTGTAGGTAATGATGAAGAAGAAGGTCCGCCGCCTGGTTGGGATGCGTTGCCGTCACCTCCGCCACTACCTCCGTCCTCTCAACCGGAAAGGGGTCAAATGGTTTGCGGTTCCTGTCGCCATCTCCTTTCTTATCCCCAAGGAGCCAAGCATGTCCAATGCTCATGCTGCCAGACAGTGAACTATGTACTTGAAGAGCATGAAGTCGGACAAGTGAAGTGTGGAAACTGTCAACTGCTTCTGATGTACCCTTACGGAGCTCAATCTGTTCGATGTTTCTCTTGCAGTTCTGTCATTTACATCGGAGATCATAACAGGCGTCCTCCACTGTCAGTACAGCAGAGCCAAGCTTGCCGACCTTTTAGCATTTCTCACTGAGGACTCGTATATTTTTTTTTCTTTTAACTCTTTTTTTCCCTTTCTAAAATGTAATTCCAAGGGCTACATTAATTGCATTAGATTGAACTATTGAAGTAGCAGTTAGCAGATGTTGCGTAATGCGGGAATTCAACATTGTATTCAGGCAAAATGTAGCCTACTTTCAATGACAAACTGAGAAATTATTTCTACATTGCAATTGATTACTTTATGCTTTGAC

Coding sequence (CDS)

ATGGATGAAGAAATAGGAGATACTCTCCTGACTGAAGTGCAGCACCATTCGCCACTGCCACCGCCGCCACAAGAACAACCAAGAGAAGTAGAAAAAGAACAGCTAAAAGAAGAAGGTGATACTCCACAGACAGAAAAGCAACACCATTCAACCTCACTATCACCGCCGCCATCACCACCAACCCCGCAAGAACAGCCAAAAGGAGAAGAAAACGAACAACCCCAATTGAAAGAAGAAGAAACCGAACAACTCCAGTCGAAAGAGGAAGATGGGAAAGAAAATCACAAAGAAAATGATTGTGGAGGAGAACAGGTAGAAATTGAAGAAGGGGAAGTGAGTAAATCCAATGAACCAGGAAAAGAACATGAAAAAATGGAAGAACTTGTAGGTAATGATGAAGAAGAAGGTCCGCCGCCTGGTTGGGATGCGTTGCCGTCACCTCCGCCACTACCTCCGTCCTCTCAACCGGAAAGGGGTCAAATGGTTTGCGGTTCCTGTCGCCATCTCCTTTCTTATCCCCAAGGAGCCAAGCATGTCCAATGCTCATGCTGCCAGACAGTGAACTATGTACTTGAAGAGCATGAAGTCGGACAAGTGAAGTGTGGAAACTGTCAACTGCTTCTGATGTACCCTTACGGAGCTCAATCTGTTCGATGTTTCTCTTGCAGTTCTGTCATTTACATCGGAGATCATAACAGGCGTCCTCCACTGTCAGTACAGCAGAGCCAAGCTTGCCGACCTTTTAGCATTTCTCACTGA

Protein sequence

MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPPTPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGKEHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQSQACRPFSISH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00934.1Spo00934.1mRNA


Homology
[Close]
BLAST of Spo00934.1 vs. NCBI nr
Match: gi|902218655|gb|KNA18087.1| (hypothetical protein SOVF_074070 isoform B [Spinacia oleracea])

HSP 1 Score: 500.0 bits (1286), Expect = 2.500e-138
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 

		  

Query: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60
           MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP
Sbjct: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60

Query: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120
           TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK
Sbjct: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120

Query: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180
           EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ
Sbjct: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180

Query: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ 240
           CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ
Sbjct: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ 240

Query: 241 QSQACRPFSISH 253
           QSQACRPFSISH
Sbjct: 241 QSQACRPFSISH 252
[Close]
BLAST of Spo00934.1 vs. NCBI nr
Match: gi|902218654|gb|KNA18086.1| (hypothetical protein SOVF_074070 isoform A [Spinacia oleracea])

HSP 1 Score: 492.7 bits (1267), Expect = 3.900e-136
Identity = 252/260 (96.92%), Postives = 252/260 (96.92%), Query Frame = 1 

		  

Query: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60
           MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP
Sbjct: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60

Query: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120
           TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK
Sbjct: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120

Query: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180
           EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ
Sbjct: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180

Query: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIG--------DHN 240
           CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIG        DHN
Sbjct: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGVCTSSVTPDHN 240

Query: 241 RRPPLSVQQSQACRPFSISH 253
           RRPPLSVQQSQACRPFSISH
Sbjct: 241 RRPPLSVQQSQACRPFSISH 260
[Close]
BLAST of Spo00934.1 vs. NCBI nr
Match: gi|870852318|gb|KMT04247.1| (hypothetical protein BVRB_8g183230 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 221.1 bits (562), Expect = 2.200e-54
Identity = 124/234 (52.99%), Postives = 166/234 (70.94%), Query Frame = 1 

		  

Query: 24  QEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPPTPQEQPKGEE----NEQPQLKEE 83
           +EQ  +V++++ ++E D  Q E+Q               Q++ + E+    NE+ + ++E
Sbjct: 93  KEQQEDVKQKEQQQEDDEKQNEQQQEDVKQKEQQQEDVKQKEQQEEDDEKQNEESKKEKE 152

Query: 84  ETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGKEHEKMEELVGN-DEEEGPP 143
             E L+ ++++ +EN KE     E+V++ E +  +  +  ++ E+ E  V   DE+EGPP
Sbjct: 153 ALEALEIEQKEERENEKE-----EEVQVNEQDEEEETQVNEQDEEEEAQVNEKDEDEGPP 212

Query: 144 PGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQ 203
           PGWD+LP PPPL   S P+RGQMVCGSC  LLSYP+G+KHVQCSCCQTVNYVLEEH+VGQ
Sbjct: 213 PGWDSLPPPPPL---STPDRGQMVCGSCHRLLSYPRGSKHVQCSCCQTVNYVLEEHQVGQ 272

Query: 204 VKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQSQACRPFSISH 253
           V CG+CQ+LLMYPYGA SVRC SC SV+YIGDHN+RPPLS QQSQACRPFSISH
Sbjct: 273 VMCGSCQVLLMYPYGALSVRCCSCRSVVYIGDHNKRPPLSEQQSQACRPFSISH 318
[Close]
BLAST of Spo00934.1 vs. NCBI nr
Match: gi|731350756|ref|XP_010686668.1| (PREDICTED: protein LOL2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 218.8 bits (556), Expect = 1.100e-53
Identity = 111/173 (64.16%), Postives = 134/173 (77.46%), Query Frame = 1 

		  

Query: 81  TEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGKEHEKMEELVGN-DEEEGPPP 140
           T +L    ++ +EN KE     E+V++ E +  +  +  ++ E+ E  V   DE+EGPPP
Sbjct: 4   TTKLLMNPKEERENEKE-----EEVQVNEQDEEEETQVNEQDEEEEAQVNEKDEDEGPPP 63

Query: 141 GWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQV 200
           GWD+LP PPPL   S P+RGQMVCGSC  LLSYP+G+KHVQCSCCQTVNYVLEEH+VGQV
Sbjct: 64  GWDSLPPPPPL---STPDRGQMVCGSCHRLLSYPRGSKHVQCSCCQTVNYVLEEHQVGQV 123

Query: 201 KCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQSQACRPFSISH 253
            CG+CQ+LLMYPYGA SVRC SC SV+YIGDHN+RPPLS QQSQACRPFSISH
Sbjct: 124 MCGSCQVLLMYPYGALSVRCCSCRSVVYIGDHNKRPPLSEQQSQACRPFSISH 168
[Close]
BLAST of Spo00934.1 vs. NCBI nr
Match: gi|743846848|ref|XP_011027836.1| (PREDICTED: protein LOL2 [Populus euphratica])

HSP 1 Score: 173.7 bits (439), Expect = 4.000e-40
Identity = 83/132 (62.88%), Postives = 93/132 (70.45%), Query Frame = 1 

		  

Query: 121 EHEKMEELVGNDEEEGPPPGWDALPS-----PPPLPPSSQPERGQMVCGSCRHLLSYPQG 180
           + E M E    +EEEGPPPGW + P      PPP PP    E GQMVCGSCR LLSYP+G
Sbjct: 4   KEEDMAEAEEEEEEEGPPPGWQSFPPEPSLPPPPTPPPPPSELGQMVCGSCRRLLSYPKG 63

Query: 181 AKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRP 240
            +HVQC CCQ +N+VLE HEVGQVKCG+C +LLMYPYGA SVRC SC  V  IG+HNRRP
Sbjct: 64  VRHVQCQCCQMINFVLEAHEVGQVKCGSCDVLLMYPYGASSVRCSSCRVVTEIGEHNRRP 123

Query: 241 PLSVQQSQACRP 248
           P SV Q    RP
Sbjct: 124 PWSVIQGYPPRP 135
[Close]
BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGW5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_074070 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 1.700e-138
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 

		  

Query: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60
           MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP
Sbjct: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60

Query: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120
           TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK
Sbjct: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120

Query: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180
           EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ
Sbjct: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180

Query: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ 240
           CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ
Sbjct: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQ 240

Query: 241 QSQACRPFSISH 253
           QSQACRPFSISH
Sbjct: 241 QSQACRPFSISH 252
[Close]
BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF19_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_074070 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 2.700e-136
Identity = 252/260 (96.92%), Postives = 252/260 (96.92%), Query Frame = 1 

		  

Query: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60
           MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP
Sbjct: 1   MDEEIGDTLLTEVQHHSPLPPPPQEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPP 60

Query: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120
           TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK
Sbjct: 61  TPQEQPKGEENEQPQLKEEETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGK 120

Query: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180
           EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ
Sbjct: 121 EHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQ 180

Query: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIG--------DHN 240
           CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIG        DHN
Sbjct: 181 CSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGVCTSSVTPDHN 240

Query: 241 RRPPLSVQQSQACRPFSISH 253
           RRPPLSVQQSQACRPFSISH
Sbjct: 241 RRPPLSVQQSQACRPFSISH 260
[Close]
BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSV0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g183230 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.500e-54
Identity = 124/234 (52.99%), Postives = 166/234 (70.94%), Query Frame = 1 

		  

Query: 24  QEQPREVEKEQLKEEGDTPQTEKQHHSTSLSPPPSPPTPQEQPKGEE----NEQPQLKEE 83
           +EQ  +V++++ ++E D  Q E+Q               Q++ + E+    NE+ + ++E
Sbjct: 93  KEQQEDVKQKEQQQEDDEKQNEQQQEDVKQKEQQQEDVKQKEQQEEDDEKQNEESKKEKE 152

Query: 84  ETEQLQSKEEDGKENHKENDCGGEQVEIEEGEVSKSNEPGKEHEKMEELVGN-DEEEGPP 143
             E L+ ++++ +EN KE     E+V++ E +  +  +  ++ E+ E  V   DE+EGPP
Sbjct: 153 ALEALEIEQKEERENEKE-----EEVQVNEQDEEEETQVNEQDEEEEAQVNEKDEDEGPP 212

Query: 144 PGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQ 203
           PGWD+LP PPPL   S P+RGQMVCGSC  LLSYP+G+KHVQCSCCQTVNYVLEEH+VGQ
Sbjct: 213 PGWDSLPPPPPL---STPDRGQMVCGSCHRLLSYPRGSKHVQCSCCQTVNYVLEEHQVGQ 272

Query: 204 VKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQSQACRPFSISH 253
           V CG+CQ+LLMYPYGA SVRC SC SV+YIGDHN+RPPLS QQSQACRPFSISH
Sbjct: 273 VMCGSCQVLLMYPYGALSVRCCSCRSVVYIGDHNKRPPLSEQQSQACRPFSISH 318
[Close]
BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Match: V4W8M3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.400e-39
Identity = 85/128 (66.41%), Postives = 95/128 (74.22%), Query Frame = 1 

		  

Query: 120 KEHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHV 179
           +E E ME    N EE GPPPGW   P PPPLP  S  E  QMVCGSCR LL+YP+GA+HV
Sbjct: 4   REKESMENQEEN-EEAGPPPGWQ--PIPPPLPVPSPSEMAQMVCGSCRQLLAYPRGARHV 63

Query: 180 QCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSV 239
           +CSCCQTVN+VLE H+VGQVKC +C +LLMYPYGA SVRC SC  V  IGDHNRR P SV
Sbjct: 64  KCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGASSVRCSSCRFVTEIGDHNRRAPWSV 123

Query: 240 QQSQACRP 248
           QQ Q+  P
Sbjct: 124 QQGQSAPP 128
[Close]
BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Match: A0A061GEH3_THECC (Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.100e-39
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 1 

		  

Query: 120 KEHEKMEELVGNDEEEGPPPGWDALPSPPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHV 179
           +E E+ ++    +EEEGPPPGW ++P PP  PPSS  E  QMVCGSCR LLSYP+GA+  
Sbjct: 5   EEGEQQQQQQVEEEEEGPPPGWQSIPPPPQPPPSS--EMAQMVCGSCRQLLSYPRGARQA 64

Query: 180 QCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSV 239
           +CSCC+TVN+VLE H+VG VKCG+C +LLMYP+GA SVRC SC  V  IG HNRRPP SV
Sbjct: 65  KCSCCETVNFVLEAHQVGLVKCGSCAVLLMYPFGASSVRCSSCQFVTEIGAHNRRPPWSV 124

Query: 240 QQSQACRPFSI 251
           QQ Q   P ++
Sbjct: 125 QQGQPTPPNAV 133
[Close]
BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Match: LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.400e-34
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1 

		  

Query: 107 IEEGEVSKSNEPGKEHEKMEELVGNDEEEGPPPGWDALPSPPPL----------PPSSQ- 166
           +EE +     E  K  E+ EE     EEEGPPPGW++   PPP+          P + + 
Sbjct: 1   MEEIQQQTQKEEQKHREEEEE-----EEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEI 60

Query: 167 PERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQ 226
           PE+ QMVCGSCR LLSY +G+KHV+CS CQTVN VLE ++VGQV C NC+LLLMYPYGA 
Sbjct: 61  PEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAP 120

Query: 227 SVRCFSCSSVIYIGDHNRRPPLSVQQ 242
           +VRC SC+SV  I ++N+RPP S QQ
Sbjct: 121 AVRCSSCNSVTDISENNKRPPWSEQQ 141
[Close]
BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Match: LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.700e-26
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1 

		  

Query: 142 DALPS-PPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVK 201
           D++P  PPP  P    E GQMVCGSCR LL+Y +GA +V C+CCQT+NYVLE HEVG+V 
Sbjct: 51  DSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVH 110

Query: 202 CGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQ 242
           CG+C  LLMYP+GA +V+C  C  V  IG+ N R  LS++Q
Sbjct: 111 CGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151
[Close]
BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.500e-18
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 

		  

Query: 152 PSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYP 211
           P+   E  Q+VCG C  LL Y +GA  VQCSCC TVN  +E ++V  V CGNC++LLMY 
Sbjct: 96  PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQ 155

Query: 212 YGAQSVRCFSCSSVIYIG 230
           YGA+SV+C  C+ V  +G
Sbjct: 156 YGARSVKCAVCNFVTSVG 173
[Close]
BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.000e-18
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1 

		  

Query: 151 PPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMY 210
           PP +  E  Q+VCG C  LL Y +GA  VQCSCC TVN  LE ++V  V CGNC +LLMY
Sbjct: 66  PPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMY 125

Query: 211 PYGAQSVRCFSCSSVIYIG 230
            YGA+SV+C  C+ V  +G
Sbjct: 126 QYGARSVKCAVCNFVTSVG 142
[Close]
BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.300e-17
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1 

		  

Query: 147 PPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYV---------LEEHEVG 206
           PPP PP    +   ++CG CR +L Y +GA  V+CSCCQT N V             +V 
Sbjct: 40  PPPPPPH---DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVA 99

Query: 207 QVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDHNRRPPLSVQQ--SQACRP 248
           Q+ CG+C+  LMYPYGA SV+C  C  V  +   N R PL   +    AC P
Sbjct: 100 QINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPP 148
[Close]
BLAST of Spo00934.1 vs. TAIR (Arabidopsis)
Match: AT4G21610.1 (lsd one like 2)

HSP 1 Score: 145.6 bits (366), Expect = 4.200e-35
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1 

		  

Query: 107 IEEGEVSKSNEPGKEHEKMEELVGNDEEEGPPPGWDALPSPPPL----------PPSSQ- 166
           +EE +     E  K  E+ EE     EEEGPPPGW++   PPP+          P + + 
Sbjct: 1   MEEIQQQTQKEEQKHREEEEE-----EEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEI 60

Query: 167 PERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMYPYGAQ 226
           PE+ QMVCGSCR LLSY +G+KHV+CS CQTVN VLE ++VGQV C NC+LLLMYPYGA 
Sbjct: 61  PEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAP 120

Query: 227 SVRCFSCSSVIYIGDHNRRPPLSVQQ 242
           +VRC SC+SV  I ++N+RPP S QQ
Sbjct: 121 AVRCSSCNSVTDISENNKRPPWSEQQ 141
[Close]
BLAST of Spo00934.1 vs. TAIR (Arabidopsis)
Match: AT1G32540.1 (lsd one like 1)

HSP 1 Score: 94.4 bits (233), Expect = 1.100e-19
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1 

		  

Query: 151 PPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLEEHEVGQVKCGNCQLLLMY 210
           PP +  E  Q+VCG C  LL Y +GA  VQCSCC TVN  LE ++V  V CGNC +LLMY
Sbjct: 99  PPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMY 158

Query: 211 PYGAQSVRCFSCSSVIYIG 230
            YGA+SV+C  C+ V  +G
Sbjct: 159 QYGARSVKCAVCNFVTSVG 175
[Close]
BLAST of Spo00934.1 vs. TAIR (Arabidopsis)
Match: AT4G20380.8 (LSD1 zinc finger family protein)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-15
Identity = 47/138 (34.06%), Postives = 60/138 (43.48%), Query Frame = 1 

		  

Query: 147 PPPLPPSSQPERGQMVCGSCRHLLSYPQGAKHVQCSCCQTVNYVLE-------------- 206
           PPP PP    +   ++CG CR +L Y +GA  V+CSCCQT N V E              
Sbjct: 35  PPPPPPH---DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKVL 94

Query: 207 ---------------------EHEVGQVKCGNCQLLLMYPYGAQSVRCFSCSSVIYIGDH 248
                                  +V Q+ CG+C+  LMYPYGA SV+C  C  V  +   
Sbjct: 95  KTKLLDGPGGLAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMS 154
The following BLAST results are available for this feature:
BLAST of Spo00934.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902218655|gb|KNA18087.1|2.5e-138100.hypothetical protein SOVF_0740... [more]
gi|902218654|gb|KNA18086.1|3.9e-13696.9hypothetical protein SOVF_0740... [more]
gi|870852318|gb|KMT04247.1|2.2e-5452.9hypothetical protein BVRB_8g18... [more]
gi|731350756|ref|XP_010686668.1|1.1e-5364.1PREDICTED: protein LOL2 [Beta ... [more]
gi|743846848|ref|XP_011027836.1|4.0e-4062.8PREDICTED: protein LOL2 [Popul... [more]
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BLAST of Spo00934.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RGW5_SPIOL1.7e-138100.Uncharacterized protein OS=Spi... [more]
A0A0K9RF19_SPIOL2.7e-13696.9Uncharacterized protein OS=Spi... [more]
A0A0J8BSV0_BETVU1.5e-5452.9Uncharacterized protein OS=Bet... [more]
V4W8M3_9ROSI1.4e-3966.4Uncharacterized protein OS=Cit... [more]
A0A061GEH3_THECC3.1e-3961.0Lsd one like 2 OS=Theobroma ca... [more]
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BLAST of Spo00934.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LOL2_ARATH7.4e-3454.1Protein LOL2 OS=Arabidopsis th... [more]
LOL5_ORYSJ5.7e-2657.4Protein LOL5 OS=Oryza sativa s... [more]
LSD1_ORYSJ1.5e-1852.5Protein LSD1 OS=Oryza sativa s... [more]
LOL1_ARATH2.0e-1854.4Protein LOL1 OS=Arabidopsis th... [more]
LSD1_ARATH6.3e-1741.0Protein LSD1 OS=Arabidopsis th... [more]
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BLAST of Spo00934.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G21610.14.2e-3554.1lsd one like 2[more]
AT1G32540.11.1e-1954.4lsd one like 1[more]
AT4G20380.81.3e-1534.0LSD1 zinc finger family protei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 163..187
score: 6.0E-11coord: 201..225
score: 1.4
IPR005735Zinc finger, LSD1-typeTIGRFAMsTIGR01053TIGR01053coord: 160..190
score: 2.0E-16coord: 198..225
score: 1.
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 120..247
score: 1.3
NoneNo IPR availablePANTHERPTHR31747:SF4PROTEIN LOL2coord: 120..247
score: 1.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0016310 phosphorylation
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006546 glycine catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0030154 cell differentiation
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
molecular_function GO:0016301 kinase activity
RNA-Seq Expression