Spo01059 (gene) | SpinachBase

Overview


Name	Spo01059
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L23A
Location	chr2 : 59808671 .. 59813763 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGTTGGTTCTTACATAACATATGTCTTGCCTCAAAGCTATACTTTAGAAGGTGGACCATGGTGCACATAGAGCTACGTGCACCAAAAGAACACAGTATATAATTGAAAGAACATCTGGTTACGAGAAAAGAACATGAGTATTTTTTTTATTTAGGTTTTAATAAATAGTAAAATAATAAATTATTTTTATAATAAAATAGTGAAATATTATATCGCATGTTCTTTTGCCGTAGTGTCGTGCTCTTTTACTTATGCACACATGTTCTTTTGGTGCACGTAGCTCTATGTGCACCACAGTCCATAGTCTACGAATTGAGAGGGACTAAGAAAATAATTAAGTTAAAATTATTAGTGACTCTATGCTTAATAGTAACTATCCTTCGCGGGTTTAACTAAGGCATCGGTAACAAAATAGACAATAACTTTGACCCGAGGGTCAATATAATCCAATTTAACATGTTAGCCATCTAAAAAGTAAGGGGAACATTTACCACTACACCAAATATTCCCCATTGCATAGAAGAATGGTATATACTCGATGCATTATGAATGTCATTGACCATAAAAGATGATATTTCATATCAATCTTTACCCTACTTGTTTCATGTTCGGCAAAACTAGTTGTTGTTATATCAAAATTAGTAACTATCTTAAAAACTTATTCCTCTGTATTTATTTAAGGGATACACTTGTCTTTTCCGGCCGTAATTATTTAAGAGATACACTTGTCATTTTTAATAATTTATCAACCCCACCATCTAATTAAATAATCTATCTACACCCCAACCCCACTCCCACTACCTAAAATGACATAGTCCCCACTTGTTTTTCTTATTAAAATATCTACTCAACCCCACTTGTTTTATTACTTTATTTCATTTAATTCTTTTTCTTAATACACGTGTCCGGCCAAATGTATCTCTTAACACAAATAAATACGGAGGGAGTATGTCTGAACTACCTCTCATTAATTTTTGAACAATATTGTATTATTATCGATTTAGTGGAGTTCGATGATATTAGTTTTCCACCAAAATAAAATAAAAATTAAGGATGTTTTTATTATTTTTATTTTTTTGTTTTCATTTTTTCTTTTTTAGGATAGTTGGGTGTTTCAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGGTATGTGCCCTGCAAATTCGAACTTGTTTAGTTTTTTTATATTTATTATGTAATTGATTTATACTCCGTATTGCTTGTTGCTTGTTGCTTATTGCGTATTGCTTATTATAATGTTGAATTGCAAATATGCATATACTTTTAGGATTATTGATTACATTTATACTCCAAGTGGGAAACTAATGTGGGTTTAGAATCTGAGATGTGCCTGTATGAAGGAAAATTGAAGGGGGTGATACATTAGAGTTATGACGTAATATCAAATCCCGTCTACATCATTGTCTTTAGTGGCTTGATGTACAATGGGAAGTGAGTATAACTGTAGATTGTCGATACATTTGAAAAAATGATTGGTTGTTTGAATTGAGAATGGTGATAAGAGAAATATGAGGCTGAAGGTTTTCCCTTCTGATATACGAAGTATGTATTAATTTTAGTTGAAAGTGTGCTGGGAGATGATTTATCTATAAAGTATCCTATAGAAAGTAGTTGTGTCCTCCTACTGAGAAATTATAGAACTAGCTGTGATGAACAGATTAGTCTGAACGAAGTTATGTGACCGGCTCGTGCATTACATTCACCAGTACATTGATAAGCAGAATGTTGTTGTCTTCCAATCTGTCATGATGATTTTCTAGCTTTTTTTTACTTGTTGTGTAAAGGATTGGCGTCTTGGTTAATGGTGGCTTTGAAGAAATTTAGGACAAGATTATCTTTTGCAATGTTTTTTTGGTAATATATTGCAAGTGAGGTTTAGTATTAGTAAAATAAATGCTGTTTTCTTCTTACGAATCCTAGACATTCTTAGCATGACATTCGGAATACATTGGTATCAATCAAACAGACACAAATTGTATGCTTGCAATTTGGAGGTGAAGTTAGACGTTTTTTACAAATGTTGTTGGAGACTCAAAAGATGAATTGGGCAATTGGCAAACATAATAACTGATATGTTGTTCTACAACACCATGATTCTAGGACACTATACCATTTTTAGCAAAAAACCAATGCTGCACTCTTACCTAAGTCCCTACTGCTTTGGCCTTTAAAAAAAAAAAGCCCCTACAGCATTGAAAATCATACTAAATCATGGGAAGGTAGTTGCGATTCAGAAAATCTATCAGCCTATGGTGAAGCTGCACCCTTTGTTTCTAAATAGTCAAAAGTATGACAAACATTTGTAAATTTCCTCTCTTTGTAGCCTTGTGTTTGCATGTAGAGACTAGCTTAATTGTTTAATGTTTTGAGGTCGCAAATGATGTTATGCACCATGTTCCCAAAAGAATATAGTTTAAAGTAAAATAACACATCTCATTTTCATTCATAAACCATAGTCCATAGTAAATAACATACTATTCATAATAAAAGAATACGTAGTAAAAATAACATACAATAAAAAATAAAAAAAAACATGCAAGTATGATTAAAGGACATGCAACTATGCAAGTATAATGAACAAATATTAACTGGTACATACTGCTCTTGGGTGCAGATGCACTAAATCGAATACTGTATATATCATTGCCCTTTGTTGCTCGCCGTCACCCAAAAAGGGATCTTAGAGCCAAAGTGGATGATGAATATAAGAGATTAACGAAACATTTGAAAAAAACCTTGGTTTTTGGAGTTGGGGATTAGTGCTTTAAAAAAAATGGTTGACCGTGTGGGAATATGTAGGTAGGGATTAGAGATAACTCGATAAGGGAAATATGAGGTTGGCTCTTCTTATGTATGTATTTTCTTTGAATGTGTGCCGGGAGATGGGTTTTTTTTGCAAAGTGTCCTATTGAAACTAATTGTATCCCCTGCTGAGAAATTCTAGACCCAGCTGTGATGAACAGCTCTGCTTGGCCATCAGTCCATCACTATGTATGCAGCTCATGCATTGCATTCGCCAGTACTGTAATTGGCAATACCTGTTGTCTTCCACGATGATATTCTATCTTATCTCTTCTTATTGTGTGAAGGATTGGTGGTATTGGGGCTTTGAAGAAATTTAGGAATTAGGACAAGTTTTTTGTGTGGCAAAATCGTAGATATACTTAGCGTGACTATAGGAATGCCGAATGCATTTGTATTACGCAAACAAGCCCAATTGCATGTTCTCCTGAGTTCAAATGTGACGAGTATTACAAATGTTGTTGGAGTCGCAAAAGATGAATTGACAAGCATTCTGCCCCACCATGATTCTAGGACATCATACCACTTGGGCTGTTTAGAAATAAACCAGTGCTGCATTTTGACGTAAATCTACAGTTCTACCAATTCCTTGGAAGGTAGTACGGATTCAGAAAATCTATCAGCTTATGGTTATGCTGCATCCTTTGCTTCTATATAGTCAAAGTATGCCACACCATTCATAAATTTCTTCTCCTTGCAGCTAGCTACTTTGAAACACCCAATTGTCCTCTAAAAAGAAAAATAACCTCCTTAATTTTTATTTTGTGTGGAAACTTACATGATTGATATCGAGTCCCTTGTAAATTGAGAATATTGTTCTTAAATTAGTAAGAGACAAAAGCTTTTAAGGTAGATACTAATCCTGCTAAAACAACTAGTTTTGCCAAACATGAAATAAGTAGCATAACGATTGATGTGACTGGGTAATGTTTGGTCTAATTGATTAAAGTTTCCTGTACTTTAATGGTAATGTGCTAATGTCAATCAGTCTGTTCAAGTACTGTTTATAGGGATGTCAGTTGTGTAAAGTGGCAACTTTTATTTTGGCCATTTACTGAATCCAGTATATAAATGTGAGTTAATCTAACAAAATAGTTACTTGCAGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGTAAACTATAAGACCTTTTATTTTCCATTATCCTGCTGTTAAATTAATCCCTTTTACATCTTTCATACCATTGTAATGCCTTTTCTGGACAAAACCTAGAATTTTCAGCATAGTTCATTAATTATACATTTTATGTTGTTTTACAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGGTGGAAACTAACTTGAATACTTTTAGATGTATAGTTGTGGCCTTCTTTCTCCTTTGTTGACGACGAAAGCTAAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCAGTGAGTATTGCACTTAAGTTTGCTCATCCTTTTTACCTTCTCGAGCACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

mRNA sequence

ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCACACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

Coding sequence (CDS)

ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCACACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

Protein sequence

MGGLITNILQGKGKGRTNSGLSATPTLSSALLFSLLTLHLSLPAMATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPVGALFGDGITSNLQLSSISLLAFQVSVSLKCVTSVTPEVGVFRSVFFCFCFTFAVVVLRFKALSGINVF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01059.1	Spo01059.1	mRNA

Homology

[Close]

BLAST of Spo01059.1 vs. NCBI nr
Match: gi|902202220|gb|KNA14201.1| (hypothetical protein SOVF_109700 isoform A [Spinacia oleracea])

HSP 1 Score: 370.5 bits (950), Expect = 2.800e-99
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197

[Close]

BLAST of Spo01059.1 vs. NCBI nr
Match: gi|75335589|sp|Q9LWB5.1|RK23_SPIOL (RecName: Full=50S ribosomal protein L23, chloroplastic; AltName: Full=PRPL23; Flags: Precursor)

HSP 1 Score: 370.2 bits (949), Expect = 3.600e-99
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRR+LDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197

[Close]

BLAST of Spo01059.1 vs. NCBI nr
Match: gi|902202221|gb|KNA14202.1| (hypothetical protein SOVF_109700 isoform B [Spinacia oleracea])

HSP 1 Score: 361.7 bits (927), Expect = 1.300e-96
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH  V
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH--V 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 195

[Close]

BLAST of Spo01059.1 vs. NCBI nr
Match: gi|731354926|ref|XP_010688865.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.4 bits (747), Expect = 9.500e-76
Identity = 161/219 (73.52%), Postives = 175/219 (79.91%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKK------------- 104
           MATT+PNLHSLSSSF+ +N SSNVSATSFTFQIP K  QISC SSKK             
Sbjct: 1   MATTSPNLHSLSSSFSLTNHSSNVSATSFTFQIPKKTPQISCFSSKKTVFVHPTELHGMS 60

Query: 105 -----------LHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTS 164
                       HTQ SFNFHDAV+ M +P  GRDLMVAQATEAVA TTE  A SQ K++
Sbjct: 61  YGFSNVGTIASAHTQNSFNFHDAVSSMKRPGLGRDLMVAQATEAVATTTEAPAASQSKST 120

Query: 165 KKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFG 224
           KK +K+KYPRRVLDVYQILQ PIITEAAIK+I DEN+LLFTVDVRADKKMIR+AISNFFG
Sbjct: 121 KKREKIKYPRRVLDVYQILQVPIITEAAIKSIGDENTLLFTVDVRADKKMIRDAISNFFG 180

Query: 225 VKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFP 240
           VKVRKVNTLIRPDGTKKAYIML+KEYNAS+LAKKIGIFP
Sbjct: 181 VKVRKVNTLIRPDGTKKAYIMLSKEYNASDLAKKIGIFP 219

[Close]

BLAST of Spo01059.1 vs. NCBI nr
Match: gi|460408177|ref|XP_004249523.1| (PREDICTED: 60S ribosomal protein L23a-like isoform X1 [Solanum lycopersicum])

HSP 1 Score: 114.8 bits (286), Expect = 2.700e-22
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQILQ P+ TE+A+K I D N+L+F VD+ ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNRLDQYQILQCPLTTESAMKKIEDNNTLVFIVDIHADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            IR+A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIRDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3X1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109700 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.900e-99
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197

[Close]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5X3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109700 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.900e-97
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH  V
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH--V 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 195

[Close]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EHG0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203900 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 6.700e-76
Identity = 161/219 (73.52%), Postives = 175/219 (79.91%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKK------------- 104
           MATT+PNLHSLSSSF+ +N SSNVSATSFTFQIP K  QISC SSKK             
Sbjct: 1   MATTSPNLHSLSSSFSLTNHSSNVSATSFTFQIPKKTPQISCFSSKKTVFVHPTELHGMS 60

Query: 105 -----------LHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTS 164
                       HTQ SFNFHDAV+ M +P  GRDLMVAQATEAVA TTE  A SQ K++
Sbjct: 61  YGFSNVGTIASAHTQNSFNFHDAVSSMKRPGLGRDLMVAQATEAVATTTEAPAASQSKST 120

Query: 165 KKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFG 224
           KK +K+KYPRRVLDVYQILQ PIITEAAIK+I DEN+LLFTVDVRADKKMIR+AISNFFG
Sbjct: 121 KKREKIKYPRRVLDVYQILQVPIITEAAIKSIGDENTLLFTVDVRADKKMIRDAISNFFG 180

Query: 225 VKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFP 240
           VKVRKVNTLIRPDGTKKAYIML+KEYNAS+LAKKIGIFP
Sbjct: 181 VKVRKVNTLIRPDGTKKAYIMLSKEYNASDLAKKIGIFP 219

[Close]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: K4D3P5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQILQ P+ TE+A+K I D N+L+F VD+ ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNRLDQYQILQCPLTTESAMKKIEDNNTLVFIVDIHADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            IR+A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIRDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A061FN72_THECC (Ribosomal protein L23AB isoform 1 OS=Theobroma cacao GN=TCM_042948 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.500e-22
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.300e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1

		  
Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRR+LDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197

[Close]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 8.500e-24
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 1

		  
Query: 135 SQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREA 194
           ++P+T K  K    PR  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK I++A
Sbjct: 51  TKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDA 110

Query: 195 ISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
           +   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.500e-24
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1

		  
Query: 116 LMVAQATEAVAPTTEEAATS--------QPKTSKKAKKLKYPR------RVLDVYQILQS 175
           L VA+A ++   T ++ A          +PKT KK +  KYPR        LD YQIL+ 
Sbjct: 18  LKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKY 77

Query: 176 PIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIM 235
           P+ TE+A+K I D N+L+F VD+RADKK I+ A+   + ++ +KVNTLIRPDGTKKAY+ 
Sbjct: 78  PLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVR 137

Query: 236 LNKEYNASELAKKIGI 238
           L  +Y+A ++A KIGI
Sbjct: 138 LTPDYDALDIANKIGI 153

[Close]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.500e-23
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYP------RRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT    +K KYP      R  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.200e-23
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD Y IL+ P+ TE+A+K I D N+L+F VD++ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Match: AT2G39460.1 (ribosomal protein L23AA)

HSP 1 Score: 112.5 bits (280), Expect = 4.800e-25
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 1

		  
Query: 135 SQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREA 194
           ++P+T K  K    PR  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK I++A
Sbjct: 51  TKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDA 110

Query: 195 ISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
           +   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

[Close]

BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Match: AT3G55280.1 (ribosomal protein L23AB)

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-24
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1

		  
Query: 136 QPKTSKKAKKLKYP------RRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT    +K KYP      R  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

The following BLAST results are available for this feature:

BLAST of Spo01059.1 vs. NCBI nr
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
BLAST of Spo01059.1 vs. TAIR (Arabidopsis)

BLAST of Spo01059.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902202220\|gb\|KNA14201.1\|	2.8e-99	99.4	hypothetical protein SOVF_1097...	[more]
gi\|75335589\|sp\|Q9LWB5.1\|RK23_SPIOL	3.6e-99	98.9	RecName: Full=50S ribosomal pr...	[more]
gi\|902202221\|gb\|KNA14202.1\|	1.3e-96	98.4	hypothetical protein SOVF_1097...	[more]
gi\|731354926\|ref\|XP_010688865.1\|	9.5e-76	73.5	PREDICTED: 50S ribosomal prote...	[more]
gi\|460408177\|ref\|XP_004249523.1\|	2.7e-22	53.7	PREDICTED: 60S ribosomal prote...	[more]

BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R3X1_SPIOL	1.9e-99	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0K9R5X3_SPIOL	8.9e-97	98.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8EHG0_BETVU	6.7e-76	73.5	Uncharacterized protein OS=Bet...	[more]
K4D3P5_SOLLC	1.9e-22	53.7	Uncharacterized protein OS=Sol...	[more]
A0A061FN72_THECC	2.5e-22	52.7	Ribosomal protein L23AB isofor...	[more]

BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RK23_SPIOL	2.3e-101	98.9	50S ribosomal protein L23, chl...	[more]
R23A1_ARATH	8.5e-24	52.4	60S ribosomal protein L23a-1 O...	[more]
RL23A_FRIAG	8.5e-24	46.3	60S ribosomal protein L23A OS=...	[more]
R23A2_ARATH	2.5e-23	51.8	60S ribosomal protein L23a-2 O...	[more]
RL23A_TOBAC	4.2e-23	50.9	60S ribosomal protein L23a OS=...	[more]

BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G39460.1	4.8e-25	52.4	ribosomal protein L23AA	[more]
AT3G55280.1	1.4e-24	51.8	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 154..237 score: 4.5
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 156..229 score: 2.99
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 158..238 score: 21
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 158..218 score: 2.4
None	No IPR available	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 136..238 score: 3.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006412	translation
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016301	kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14866	0.80	Barchart \| Table
Spo09460	0.75	Barchart \| Table
Spo23605	0.75	Barchart \| Table
Spo19407	0.75	Barchart \| Table
Spo24633	0.75	Barchart \| Table
Spo02751	0.74	Barchart \| Table
Spo18270	0.72	Barchart \| Table
Spo01647	0.72	Barchart \| Table
Spo25655	0.72	Barchart \| Table
Spo07922	0.71	Barchart \| Table
Spo17047	0.70	Barchart \| Table
Spo04460	0.70	Barchart \| Table
Spo27351	0.69	Barchart \| Table
Spo11933	0.69	Barchart \| Table
Spo03785	0.69	Barchart \| Table
Spo09487	0.68	Barchart \| Table
Spo16184	0.68	Barchart \| Table
Spo09784	0.68	Barchart \| Table
Spo12379	0.67	Barchart \| Table
Spo03518	0.67	Barchart \| Table
Spo21757	0.66	Barchart \| Table
Spo00921	0.66	Barchart \| Table
Spo11445	0.66	Barchart \| Table
Spo15244	0.65	Barchart \| Table