Spo01101 (gene) | SpinachBase

Overview


Name	Spo01101
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L7/L12, putative
Location	chr2 : 59678666 .. 59686356 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATTCGCACCCTAGAACTTAACACACGACAGTACGGTACAAACCAAAAAAATTGCAAACTTTTAAGAACGTGATTACGTAGCTCCAAGGGTTTATCTTCACCAGTCACTACCTATTCTCTACTGGTTCTCAAAAATGAAGTATTTACGATTCATTTCACCCAAATTCACAACTCTACAAAACCCTAGACCCAATTTTTTAGGGTTCATTCAACCATCAAATGCTAACTCCACGCGGAATCACACTACTCCAGCTCAAGAATCAACGCCTAAATCACCGCCACCGGCGGCGAAGATCACCTCAATCGCCAATGAAATCTCGAATTTAACATTGCTGGAAGTGGCGGATTTGACGAGTTTGCTAGGGAAGAAATTGGAGGTCAAAGACTTGCCGATTGTCTCGTTGATGATGCCTGGAATGGGGTTCAGCCTCCGAGGAATGGGTGGCGCTGGAGGCGGTGCTGCGGCAGCTCCGGCGGAGGAGGAGAAGAAGGAGAAGACTGCGTTTGATTTGAAATTGGAGGCGGGATTCGAGGCCGGGGCGAAGATTAAGATTATTAAGGAGGTTAGAAGTTTTACGGATTTCGGTTTGAAGGAAGCTAAAGAGCTGGTGGAGAAGGCTCCGGCTGTGTTGAAGACTGGGGTTTCGAAGGAGGACGCAGAGAAGATTATCGAGAAGATGAAGGCGATCGGTGCCAAAGTGGTCATGGAGTGAGGTAAGTTATGTTAAATGATCTTTTTAAAATTATCTTTATGGAAATTCACTTCATTTGGTAGAACTTTGTATTTGGTGGTGTTTGTTATATGCATTTGTTGTTGGATTATATATGCTTTGAGTTAAAATGGTATTTTTGTTAAAAATCAGTAAATCAACCCGACTTACATGACTATGAACCTCTGCAATCATTACTGAAGCTGAGTTCTCCATTAGATTGTTGATTTAGGCAATAGTACTTAGCCGTATCAGAATTCTCTTTCCCTGGACTGGTAATGTAGAAGCTTGATTTGGGTTGTTAAACGGAATTGGAAAAAGAAATGGGATTGGACATGTTAATGGGTTTTGGCAACTATGTGACTAGTTGCTCTTTGAAGCTGGGGAGTGGCTGGAAAGAAGTAAATTCAGGAAAAATTCTTCCTTAGTTCGGGTTGAATTGTTTGTGGCGATTGAGTTTAGGAATTAGGGGGCATCTAATCATCATGTTCCGACTTTTTGGTTAAGAGCAGAGAAACCTTTGTGAAGTTGGGAGCATATTTTTGTCAAAGTTTGCTACTTACATGGATTGTTTGCACTAAGTGATGTTGGATAATGTTTCTGGCACCTCTTTGTGAAGGCATTTCCTTGGTCATGTATATTGAGGTTCGCGAATGGACCACATAGTTAGTTTCTTTTGCTTTAAATACTTATTAAGGGTGGGAAGAATCTGATTTTAGCCTTAGTCAAAAAGTTTGGATTGCGGACACTAGTTGATGTTGGAAAATACTATTTGCTACTTAGCTGTTGAGAGTTTTGCTTGGTCTTGTATACTGAGGTTCTCAAATGTCTCACGTTCTTGGTGTTGTTTGCGTCAACCACTTACCAAGGTTTGGAGGAATCTGATTCAAGCTTAAATGGGAACTTTTAGGCCCTGTTTTGTTCACCTTATTTTCACTTATTTCAGGAAAAATAAGTTCAGTTAAGTTCAGATAAGTTCAGATAAGATAAGTTCAGGAAAAATAAGGGTTGACCAAGTACAACTTATAACTAAAATAAGTTTTGATAAGTTTTAATAAGTTCAGATGAGTTCAGTTAAGTTCAGATAAGTTCGTATAAGATAAGTTCAGAAAAAATAAGTGAACATCAGGTGAATAGAACGCACCCTTACTTATCATTAAGCGCTGATTTCTATTTTATTCAGCCTTTGTTTTTAGTGTACTTACTGTTTTGAAGTGCGTAGATTGGTTGAGGATACTACTAAAATTTGAGCTTGGAGAATTCCCACCCTCGACAACTGAAACTTTAAAATTTGATATTCTAGCAATATAGCTTATATATCCTTTAGTGAAGTGATTCACATAGGTATTCATAAATTAGTGTCCACCTTATCTACTTTTTTTATTCCATATCATCTATCCTTGACATATTAAGGCAATGTACCTGTAACGGCTGTAAGTTTAAGATACCTGTGCAGTAATCATCTCCTCTCTCTCTCTCTCTCCAAAAGCTCAGAGTTAGATACAGATTGATAGACAAAAGTGCTCTCTCTCGGCCCTTACCTGGTTACTCCGACCCCCTTTTCTTCCTTTTGAGCATGAGCACCAGCAACCCCCATGACCCCATCTGTCTAGAATTCTAGATCCTTACCCTCCCCTCTCCACCAGACATCAAACTACTCCGCAAATCAAGTCCAACATGTTACCCTGCAGCCACCACAATAATTCTCAGCAATAAATCTTAACCACCTCAGCTTCGCCACTTCGCGGTGAGCCATATCTGCAACGTTCCTCATTGCTTGCTGTCCTTCTTTTGTTATCTGTCATTTAACAGGACATAAGGGTAGAAAGATTTTTGCACAGCGACTCAGCTAGTAATCAGAATTCAGTACGTCATTAGGGTTTGTGTTGGGTGGTGCCGTGGTGGCAGTCTTCCTTACACAGCAGATTTGAGGGGGATTAGAGGCTTTGGAGCGGTAGGGAATGGGGATGATGGCTGGTGGCACGGTTGTCTGATGGCGATGGTGGGAATATGGAGGTAGATCAAGGGAGGGAAGAAAGCCACCGTTATTTCTAGAGAAAGGAAGCAGATTTGTGATTCTTGATAGGATTTTGCTGGAGAAGGTGGGAATTGAGGTGAGTGGAGAGTAGGAAGCAGGGAGCCGGGAGGACAACCACTGTTTTCATCTGGGCAAGGGAGAAATATTTACAAATTGTTTTAGAGGATCTGCTGAAAAAGTGGGCATGTATGGAAGGAAGAGGGAGGAGCAGTTTTTGTTTTTTGGTCGTAGTAGGCTGAGAAGGGAAAGAGACAGGGAAGGGAGGGTTGCTGTGCGGTTGCGTTACTAACAGAAAGAGAAGGTGCCAAGGTGGATACTGGGGTGACTCGGGTGAGTAGAGAGTAGGGAGAACAATCTCTGTTTACATTTGGAGAAGGCATACTTTTTCCCGAAAAGGTGGGAATGTAGGGTGAGAAAGAGGGATCAGTTTTTTTCTTTTCTTGCCAGAAATGGGGAGGCTGAGAAAGAGGGATCAGTTTTTTTCTTTTCTTGCCAGAAAGGGAGGGTTGGGTGGGTAGTGTCGTTTTACTACAAAGCTATATAAACCTATCATATCGGCTTTTTGCAATGCTAACTTTAAATTGGCCCACCAATGTATCTCTTATAAAACACCGTGCCATTTTCAGGAGTATTAAACTACTTTGAGATGAGGGAGTAAGGCAAGGGCCAAAAAGTTAGGAAAAATCTAGACAAGGGCTACCATGTTCAATTTACATCTGATTATAAGTTTATGTGAGTTAAGATAAGTTCTGGTAAGGTAAGGTATAGGTATAAAGGAAATTCAGGTGAAAAAGAAAGCCTTTAGCCCTTTATGATATTTGTGAAACCAAGTCAACAATTAATGAATAATAAGGTCAGAAAAGTCTAGACAAGGGCTACCAAGATCATTTTATAACTGAGAATAAGTTTTGGTGAGTTAAGATAAGTTGGGTAAGTTTATATATAAGGCTATAAGGGAAATTCAGGTGAAAAAAGAAAGTGTTTATGGTATTTTTGAAACTGAGTCAGCAAAGAATGGACTTCTAGGGTAAGAGCATTTGTGCCTTAATAGAAAAGGGATGGACATTGGCGTTATGTTTACTCCTATAACGTGTTTGATTCACTAAATACATCTTCATTCTATTCTCTTTCATACATATGGCGCAAGTACTCACAACCAATCCATAATTGTAGTTTTTGAGGCTTCTAGTCTCATACCGCATTTGAATCAGAGGAACCAAATGCTTAGAAATTTCCTCATGACACTGGTGTAAGTTGTATGTTTGAAAGAATGGACAAGATATGAATCAATACATTAAGTCCTAGTGTGAAATAACTACATTGTCCAACTCCCAACCTCCATTATTACAGATATGATGTTGTTTTTCCCTATCCCTTTTCACATCACGTCACGTGAGTTCTGTTCCAGATGTAGGGAGTAAAATAAGTTAGATTAGAATCTGGGTTTAATTCCATGGATAATGTAGATAGGATTGTAAAGTATGATAGCCTTGAGAAGCAAGTAAAACTTTCTCAGTTCTTTTGTTAATCTGTTTTATATTTTGAGAACAGGTGGATTGAACATAAAATTTCGCCTGCTAAAATGGGTAATAAAGTAGAATATTTTGCTATGTCAAACAATTGAATTGGATTCGATCAGATGGTACTGAAAAAATGGAATGAGCTAAACCCCGAAGTATATAAATTGTATGTAGGCTTATTGAAACTTGAAAGGAAGAAGGGTATATAGGTTACGTTGTAGCCTGCTCATTTCTGCTAGACATCTCAGACTATTAGCGATTGATGGGAGCAGGAAGAGTTGGAAATGAAAAGGAGTGGATTGTTTGTGGAGTGCTTCCTGGAAACTAAGTTAGATGTACTTCTTTTGAGATTTAAAAAGACTCTCGTTCGAGCAAATTTATACTCCGCATGAATTTATATAGTATTCATATGGTGGAAAAGGTCTTGTTTTAACTTGACAGACTATGGTCCAAAGCCTAGAAAGACTTAAGAGTATTGTGGGCACTCATTTGGTTCTTGGATTTCTTGTTGCTTAGGTAAAGGACAGCAGCATGCCTCATCTGCATTTTCCCCCCCTCTGTGTGTGTGTGTGTGTGTGGGTTGGGGTTGGGGTTGGGGGGGAGAGGGGGGAGAGGGGATTAAAATCTGCAATATCATACCTTGAATCATTGCAGCATCTACTTCTACACCTTTGTTTACTTTTGGCTCCGCCAACCTGGTTTTGACTTTTGAGTTAACCAACTCACCGGCATCACCGAATACTTGCGAAAAGGAAGAGAGTCCACATTCCAATTACTTAATCTTTGGCTCCAGTATGTTGTTTCTTTGCTTGTTTCTTTGAGAAAGAGAAGTGTATGGTGTTAGCACAATGGGAGTCTAACCCATTTTTTGGGTTTACTTGAAGTAAGATGGAAATTTATTGAAGATAGTTTCACGGATATAGTACCTGGGAGGCTGTATTGGAGTACTCGGTTTACATTCTTTCTGCATCAATTGAGACTAGTTATAATTGTCTAACATTGTGTATGAGGGGAGCAATATATTTTAGCATTACCCAAAATTACAATCTGTTAATATTTCACTTGGGGTTTATTGAACTTTCTTTCTTGTCTCTTCTGCTCCTATAATTCCAGTATTATTTTGGGGGCTGGGTGCTTTACCAATTACGGAGTACCCCTTAATAATTATTCATTTGCTATGTTTTAGCTTGATGAGACTTTGCTTTATATTTTAAAAGTTCTAATAACGGTATTTTTTAGATTTATAAGAGTTCTCTTTCTGAGGGTTGCTTTTGGTCTTGCCTATTATGTGAAAGTTCTTTCGTAGACTGTTTTTGGATAGTTTTTTTATTTTTAAGGGTGATCATCTGAACCATATAGGTATAATCTACAATGTTGATTACTCATTCCCTACAATGAAAGTATGTATTGTCTTAAACTTGTAAGTTTTCTCATATTCTTCATATTTGGTTTATCATAATTGATAACTTAATCAAGTTTCTGGACATTGTTATGGCTTTACCTCGACTACCAACTTTTGGATTCCTTAAACTTTATAATGAACTGCTTTTTACATTGTTGGCCCAATTGCATGACTATGTCTTGGCTGGTGCTCTTTTCTTTTGCAAGAGCTATAAGCCCTATACGTCGACCTACTCGTCACCTATCAAATTTGGTTTCCACAAGATAAAAGCGGTCTGGTTCCATATATGGACTGTTGCACACCCCAAAGACCTAGTTGATCCTTACGAAGTTACGGTTGGAGTTTAAGAAGATCAACAATTTTTATTTCAAAATTACCCTCCTTTAAGAATTTAGGATTATCCTAAAACACCATTTCATACTTGTCAAAATTAGCTTTAGAATTAGACATAAAAAGCTTATCCCCAACAAGTTTCAAATCATTACTTGGATTTCAATGATCGATGAGATTTTCTCTAAACTAGTTATAATTGTCTAACATTTGTACAAGGGAGCAATATATTTTAGCATTACTCAAAATTACACTCTGTTAATATTTCAACTTTCTTTCTTGCCTCCTCTTGAGCCTATAGTTCCAGCATTATTTTGGGGGCTGGGTGCTTTACCCCTTAATTATTCATTTGCGATGTTTTAGCTTGATAATAATAGTATTTTTTTAGAAAGAGTTCTCTTTCTGAGGGTTGCTTTTGGTCTTGCCTGTGATGTGAAAGTTCTTTCTTAGACTGTTTTTTGGATAAAATTTTGACTTTTAAGGGTGATCATCTGAACCATATAGGTATTAACTACAATGTTGATTCCTCATTCGCTACAATTATAGCATATATTGTTTTCAACTCGAGAACCTACATAGATGTTGAAGCCTGAACATGAAAAAATAGAACTAATGACTGTGGAGTTGGACCCAATTATAAAAAAAAATCGACTCCCCTAACTAGATGTCATTTGAGCTATTTGCTATTGGATTTCTGGATTTTTGTCCTAGCATTTCTATATGTGAATGATTTGGCTTAATGAGGAAAAGTAAGCAGTTTTAGTATTTGTAGAGGATTTTGTGTCCATCACTTGTGCTTTCTTTAAAAGTTTCTATATGTGAATGATTTGGCTATATGTGCTTTCTATATGTGAATGATTTGGCTTAATGAGGAAAAGTAAGCAGTTTTAGTATGTGTAAAGGATTTTGTGTCCATCACTTGTGCTTTCTTTAAAAGTTTCTTTCCACTCATTTTTGTGCTCTATTTTCGTGGAGTCCTCGGTGAGTCGGTGGTTCATTATGGTTTACGAAATCATATGGCAACTTTTATTAGCTGTTTGGATTTGGGTGAAATGGTTTCCGGGGAATAATCTCTTCCTTATTTCATTTGTTAATGCTTGCAATTCAGTAATATTTCTAATTTTAACTTGAGTCTGTCTAATACATGCATTTCTGTCCTTACAGGTTCATCTCGGGTTTTAGTTAGATTTTTTGCCTAAAGAAGGTTTGGCAGAATGAAGGATTTCTTCTCTAATTTGTGGCATCGTTAAGCTTGCCAACTGTTGCACACACCATGCTTATTAGAAAGGGCTATGATAGGGATAAATTAATATCTCAATGATATACCTTGGTTTTTCCATCAAACTTGTAAGTTTTCTCATATCATTCATCGTTGTAGTCTTTAATGGAAGTAGGTGATAATGATCAAAATTGCACACTCAATCATGTACCTTACAGTTCTGCAATGGTTACTGCAACATAATAGAACATCTCCATTCTTAGATTTGTCAAACTGTTTTCCTTTACGATTTTCTCGATTATTGCACTGCTTAGATTTCGTTTTAATTTCAAGTGCTCGTGTCGGATAGCAATGTTCATATTTTGATGATATATTTCAGCAGTATCATGCTTACCTATCTACTTAACTTATGGGGACTTGAGTGGATTTACAGATTTTAGTTATGATGAATTTGAGTGGTATGACTGTG

mRNA sequence

TGGAATTCGCACCCTAGAACTTAACACACGACAGTACGGTACAAACCAAAAAAATTGCAAACTTTTAAGAACGTGATTACGTAGCTCCAAGGGTTTATCTTCACCAGTCACTACCTATTCTCTACTGGTTCTCAAAAATGAAGTATTTACGATTCATTTCACCCAAATTCACAACTCTACAAAACCCTAGACCCAATTTTTTAGGGTTCATTCAACCATCAAATGCTAACTCCACGCGGAATCACACTACTCCAGCTCAAGAATCAACGCCTAAATCACCGCCACCGGCGGCGAAGATCACCTCAATCGCCAATGAAATCTCGAATTTAACATTGCTGGAAGTGGCGGATTTGACGAGTTTGCTAGGGAAGAAATTGGAGGTCAAAGACTTGCCGATTGTCTCGTTGATGATGCCTGGAATGGGGTTCAGCCTCCGAGGAATGGGTGGCGCTGGAGGCGGTGCTGCGGCAGCTCCGGCGGAGGAGGAGAAGAAGGAGAAGACTGCGTTTGATTTGAAATTGGAGGCGGGATTCGAGGCCGGGGCGAAGATTAAGATTATTAAGGAGGTTAGAAGTTTTACGGATTTCGGTTTGAAGGAAGCTAAAGAGCTGGTGGAGAAGGCTCCGGCTGTGTTGAAGACTGGGGTTTCGAAGGAGGACGCAGAGAAGATTATCGAGAAGATGAAGGCGATCGGTGCCAAAGTGGTCATGGAGTGAGTTCATCTCGGGTTTTAGTTAGATTTTTTGCCTAAAGAAGGTTTGGCAGAATGAAGGATTTCTTCTCTAATTTGTGGCATCGTTAAGCTTGCCAACTGTTGCACACACCATGCTTATTAGAAAGGGCTATGATAGGGATAAATTAATATCTCAATGATATACCTTGGTTTTTCCATCAAACTTGTAAGTTTTCTCATATCATTCATCGTTGTAGTCTTTAATGGAAGTAGGTGATAATGATCAAAATTGCACACTCAATCATGTACCTTACAGTTCTGCAATGGTTACTGCAACATAATAGAACATCTCCATTCTTAGATTTGTCAAACTGTTTTCCTTTACGATTTTCTCGATTATTGCACTGCTTAGATTTCGTTTTAATTTCAAGTGCTCGTGTCGGATAGCAATGTTCATATTTTGATGATATATTTCAGCAGTATCATGCTTACCTATCTACTTAACTTATGGGGACTTGAGTGGATTTACAGATTTTAGTTATGATGAATTTGAGTGGTATGACTGTG

Coding sequence (CDS)

ATGAAGTATTTACGATTCATTTCACCCAAATTCACAACTCTACAAAACCCTAGACCCAATTTTTTAGGGTTCATTCAACCATCAAATGCTAACTCCACGCGGAATCACACTACTCCAGCTCAAGAATCAACGCCTAAATCACCGCCACCGGCGGCGAAGATCACCTCAATCGCCAATGAAATCTCGAATTTAACATTGCTGGAAGTGGCGGATTTGACGAGTTTGCTAGGGAAGAAATTGGAGGTCAAAGACTTGCCGATTGTCTCGTTGATGATGCCTGGAATGGGGTTCAGCCTCCGAGGAATGGGTGGCGCTGGAGGCGGTGCTGCGGCAGCTCCGGCGGAGGAGGAGAAGAAGGAGAAGACTGCGTTTGATTTGAAATTGGAGGCGGGATTCGAGGCCGGGGCGAAGATTAAGATTATTAAGGAGGTTAGAAGTTTTACGGATTTCGGTTTGAAGGAAGCTAAAGAGCTGGTGGAGAAGGCTCCGGCTGTGTTGAAGACTGGGGTTTCGAAGGAGGACGCAGAGAAGATTATCGAGAAGATGAAGGCGATCGGTGCCAAAGTGGTCATGGAGTGA

Protein sequence

MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIEKMKAIGAKVVME

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01101.1	Spo01101.1	mRNA

Homology

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BLAST of Spo01101.1 vs. NCBI nr
Match: gi|902227245|gb|KNA20623.1| (hypothetical protein SOVF_050630 [Spinacia oleracea])

HSP 1 Score: 356.7 bits (914), Expect = 2.600e-95
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE 60
           MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE
Sbjct: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE 60

Query: 61  ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE 120
           ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE
Sbjct: 61  ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE 120

Query: 121 KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE 180
           KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE
Sbjct: 121 KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE 180

Query: 181 KMKAIGAKVVME 193
           KMKAIGAKVVME
Sbjct: 181 KMKAIGAKVVME 192

[Close]

BLAST of Spo01101.1 vs. NCBI nr
Match: gi|731354946|ref|XP_010688875.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 284.3 bits (726), Expect = 1.600e-73
Identity = 159/194 (81.96%), Postives = 174/194 (89.69%), Query Frame = 1


		  
Query: 1   MKYLRFISPKF-TTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIAN 60
           MKYLRF+S  F TT QNP+P  LGFI  SNANSTRNHTT +Q+STPKSP    KIT+IA+
Sbjct: 1   MKYLRFLSHNFRTTRQNPKPQVLGFIHSSNANSTRNHTTQSQQSTPKSP----KITAIAD 60

Query: 61  EISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAA-PAEEEK 120
           EIS+LTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGF+  GMGG GGGAAAA PAEEEK
Sbjct: 61  EISSLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFNFGGMGGGGGGAAAAAPAEEEK 120

Query: 121 KEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKI 180
           KEKTAFDLKLEAGF+ G+KIK+IKEVRSFT+ GLKEAKELVEKAP VLKTGVSK++AEKI
Sbjct: 121 KEKTAFDLKLEAGFDTGSKIKVIKEVRSFTELGLKEAKELVEKAPVVLKTGVSKDEAEKI 180

Query: 181 IEKMKAIGAKVVME 193
           IEKMKAIGAKV+ME
Sbjct: 181 IEKMKAIGAKVIME 190

[Close]

BLAST of Spo01101.1 vs. NCBI nr
Match: gi|743839146|ref|XP_011025868.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Populus euphratica])

HSP 1 Score: 189.5 bits (480), Expect = 5.400e-45
Identity = 113/196 (57.65%), Postives = 146/196 (74.49%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTP--KSPPPAA-KITSI 60
           M+ L FIS    TL             ++++ TR  T+P+QESTP  + PPP+  +++SI
Sbjct: 1   MRSLHFISQIHKTLNL---KITSRFTLTSSSFTRRFTSPSQESTPSPQEPPPSTDRVSSI 60

Query: 61  ANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSL-RGMGGAGGGAAAAPAEE 120
            +E+S LTLLEV+DLT +L  KLE+K++P++++MMPGMGFS+  GM G GGG AAA   E
Sbjct: 61  VDELSKLTLLEVSDLTEVLRTKLEIKEMPVMAVMMPGMGFSMGAGMKGGGGGGAAAAKAE 120

Query: 121 EKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAE 180
           EK EKT FD+KLE GF+A AKIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K++AE
Sbjct: 121 EKVEKTVFDVKLE-GFDAAAKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTKDEAE 180

Query: 181 KIIEKMKAIGAKVVME 193
           KIIEKMK +GAKV ME
Sbjct: 181 KIIEKMKGVGAKVTME 192

[Close]

BLAST of Spo01101.1 vs. NCBI nr
Match: gi|566181124|ref|XP_002310275.2| (hypothetical protein POPTR_0007s13440g [Populus trichocarpa])

HSP 1 Score: 188.7 bits (478), Expect = 9.300e-45
Identity = 114/197 (57.87%), Postives = 148/197 (75.13%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQ-NPRPNFLGFIQPSNANSTRNHTTPAQESTP--KSPPPAA-KITS 60
           M+ L FIS    TL+    P F      ++++ TR  T+P+QESTP  + PPP+  +++S
Sbjct: 1   MRSLHFISQIHKTLKLKITPRFT----LTSSSFTRRFTSPSQESTPSPQEPPPSTDRVSS 60

Query: 61  IANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSL-RGMGGAGGGAAAAPAE 120
           I +E+S LTLLEV+DLT +L  KLE+K++P++++MMPGMGFS+  GM G GGG AAA   
Sbjct: 61  IVDELSKLTLLEVSDLTEVLRTKLEIKEMPVMAVMMPGMGFSMGAGMKGGGGGGAAAAKA 120

Query: 121 EEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDA 180
           EEK EKT FD+KLE GF+A  KIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K++A
Sbjct: 121 EEKVEKTVFDVKLE-GFDAAVKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTKDEA 180

Query: 181 EKIIEKMKAIGAKVVME 193
           EKIIEKMK +GAKV ME
Sbjct: 181 EKIIEKMKGVGAKVTME 192

[Close]

BLAST of Spo01101.1 vs. NCBI nr
Match: gi|728828590|gb|KHG08033.1| (50S ribosomal L7/L12 [Gossypium arboreum])

HSP 1 Score: 188.3 bits (477), Expect = 1.200e-44
Identity = 115/200 (57.50%), Postives = 147/200 (73.50%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQN---PRPNFLGFIQPSNA---NSTRNHTTPAQESTPKSPPPAAKI 60
           MK LRF S   T +     P P+     Q SN+     TRN+TTP+QEST ++P  + K+
Sbjct: 1   MKSLRFFSTNLTRIHKTLVPNPSISSSTQSSNSFYLTPTRNYTTPSQESTKQAP--SEKV 60

Query: 61  TSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAP- 120
           ++I +E+S LTLLEV DLT +L +KL+VK++PI+++MMPGMGF    M GAG G AA P 
Sbjct: 61  SAIVDELSGLTLLEVMDLTEVLRQKLDVKEMPIMAVMMPGMGFG-GAMRGAGKGGAAGPG 120

Query: 121 -AEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSK 180
             EE+++EK  FD+KLE GF+A AKIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K
Sbjct: 121 KGEEKEEEKMVFDVKLE-GFDAAAKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTK 180

Query: 181 EDAEKIIEKMKAIGAKVVME 193
           E+AEKIIEKMK +GAKV ME
Sbjct: 181 EEAEKIIEKMKEVGAKVSME 196

[Close]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050630 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.800e-95
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE 60
           MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE
Sbjct: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE 60

Query: 61  ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE 120
           ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE
Sbjct: 61  ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE 120

Query: 121 KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE 180
           KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE
Sbjct: 121 KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE 180

Query: 181 KMKAIGAKVVME 193
           KMKAIGAKVVME
Sbjct: 181 KMKAIGAKVVME 192

[Close]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM30_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203990 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.100e-73
Identity = 159/194 (81.96%), Postives = 174/194 (89.69%), Query Frame = 1


		  
Query: 1   MKYLRFISPKF-TTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIAN 60
           MKYLRF+S  F TT QNP+P  LGFI  SNANSTRNHTT +Q+STPKSP    KIT+IA+
Sbjct: 1   MKYLRFLSHNFRTTRQNPKPQVLGFIHSSNANSTRNHTTQSQQSTPKSP----KITAIAD 60

Query: 61  EISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAA-PAEEEK 120
           EIS+LTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGF+  GMGG GGGAAAA PAEEEK
Sbjct: 61  EISSLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFNFGGMGGGGGGAAAAAPAEEEK 120

Query: 121 KEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKI 180
           KEKTAFDLKLEAGF+ G+KIK+IKEVRSFT+ GLKEAKELVEKAP VLKTGVSK++AEKI
Sbjct: 121 KEKTAFDLKLEAGFDTGSKIKVIKEVRSFTELGLKEAKELVEKAPVVLKTGVSKDEAEKI 180

Query: 181 IEKMKAIGAKVVME 193
           IEKMKAIGAKV+ME
Sbjct: 181 IEKMKAIGAKVIME 190

[Close]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Match: B9HFA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13440g PE=3 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 6.500e-45
Identity = 114/197 (57.87%), Postives = 148/197 (75.13%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQ-NPRPNFLGFIQPSNANSTRNHTTPAQESTP--KSPPPAA-KITS 60
           M+ L FIS    TL+    P F      ++++ TR  T+P+QESTP  + PPP+  +++S
Sbjct: 1   MRSLHFISQIHKTLKLKITPRFT----LTSSSFTRRFTSPSQESTPSPQEPPPSTDRVSS 60

Query: 61  IANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSL-RGMGGAGGGAAAAPAE 120
           I +E+S LTLLEV+DLT +L  KLE+K++P++++MMPGMGFS+  GM G GGG AAA   
Sbjct: 61  IVDELSKLTLLEVSDLTEVLRTKLEIKEMPVMAVMMPGMGFSMGAGMKGGGGGGAAAAKA 120

Query: 121 EEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDA 180
           EEK EKT FD+KLE GF+A  KIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K++A
Sbjct: 121 EEKVEKTVFDVKLE-GFDAAVKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTKDEA 180

Query: 181 EKIIEKMKAIGAKVVME 193
           EKIIEKMK +GAKV ME
Sbjct: 181 EKIIEKMKGVGAKVTME 192

[Close]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Match: A0A0B0N0W8_GOSAR (50S ribosomal L7/L12 OS=Gossypium arboreum GN=F383_11998 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.400e-45
Identity = 115/200 (57.50%), Postives = 147/200 (73.50%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQN---PRPNFLGFIQPSNA---NSTRNHTTPAQESTPKSPPPAAKI 60
           MK LRF S   T +     P P+     Q SN+     TRN+TTP+QEST ++P  + K+
Sbjct: 1   MKSLRFFSTNLTRIHKTLVPNPSISSSTQSSNSFYLTPTRNYTTPSQESTKQAP--SEKV 60

Query: 61  TSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAP- 120
           ++I +E+S LTLLEV DLT +L +KL+VK++PI+++MMPGMGF    M GAG G AA P 
Sbjct: 61  SAIVDELSGLTLLEVMDLTEVLRQKLDVKEMPIMAVMMPGMGFG-GAMRGAGKGGAAGPG 120

Query: 121 -AEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSK 180
             EE+++EK  FD+KLE GF+A AKIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K
Sbjct: 121 KGEEKEEEKMVFDVKLE-GFDAAAKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTK 180

Query: 181 EDAEKIIEKMKAIGAKVVME 193
           E+AEKIIEKMK +GAKV ME
Sbjct: 181 EEAEKIIEKMKEVGAKVSME 196

[Close]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SN82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G199600 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.100e-44
Identity = 113/200 (56.50%), Postives = 148/200 (74.00%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQN---PRPNFLGFIQPSNA---NSTRNHTTPAQESTPKSPPPAAKI 60
           M+ LRF S   T +     P P+    IQ S++     TRN+TTP+QEST ++P  + K+
Sbjct: 1   MRSLRFFSSNLTRIHKTLVPNPSISSSIQSSHSFYLTPTRNYTTPSQESTKQAP--SVKV 60

Query: 61  TSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAP- 120
           ++I +E+S LTLLE+ DLT +L +KL+VK++PI+++MMPGMGF    M GAG G AA P 
Sbjct: 61  SAIVDELSGLTLLEIMDLTEVLRQKLDVKEMPIMAMMMPGMGFG-GAMRGAGKGGAAGPG 120

Query: 121 -AEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSK 180
             EE+K+EK  FD+KLE GF+A AKIK+IKEVR FTD GLKEAK+LVEKAP +LK GV+K
Sbjct: 121 KGEEKKEEKMVFDVKLE-GFDAAAKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTK 180

Query: 181 EDAEKIIEKMKAIGAKVVME 193
           E+AEKII+KMK +GAKV ME
Sbjct: 181 EEAEKIIQKMKEVGAKVSME 196

[Close]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Match: RL7_BRASO (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.700e-17
Identity = 63/141 (44.68%), Postives = 87/141 (61.70%), Query Frame = 1


		  
Query: 52  AKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAA 111
           A +  I +++S+LT+LE A+L  LL +K  V     V++  PG           GGGAAA
Sbjct: 2   ADLQKIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPG-----------GGGAAA 61

Query: 112 APAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVS 171
           APAE    EKT F + L +      KI++IKEVR+ T  GLKEAK+LVE AP  +K GV+
Sbjct: 62  APAE----EKTEFTVVLASA--GDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVN 121

Query: 172 KEDAEKIIEKMKAIGAKVVME 193
           KE+AEKI  +++  GAKV ++
Sbjct: 122 KEEAEKIKGQLEKAGAKVELK 125

[Close]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16
Identity = 58/146 (39.73%), Postives = 92/146 (63.01%), Query Frame = 1


		  
Query: 52  AKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAA 111
           A+I  + ++IS+L+LLE ++L   L +KL + ++  ++ + P +             A+A
Sbjct: 42  AQIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAV-------------ASA 101

Query: 112 APAEEE-----KKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVL 171
           AP+EE+     K+EKT ++LKLE+ F+AG+K K+IKEV+S     L +AK+ VE AP VL
Sbjct: 102 APSEEKAPEEKKEEKTTWNLKLES-FDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVL 161

Query: 172 KTGVSKEDAEKIIEKMKAIGAKVVME 193
           K  + KEDAE I  K++ +  KVV+E
Sbjct: 162 KENILKEDAEAIKSKLEKLSCKVVLE 173

[Close]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Match: RL7_BRADU (50S ribosomal protein L7/L12 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=rplL PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1


		  
Query: 52  AKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAA 111
           A +  I +++S+LT+LE A+L  LL +K  V     V++  P           AGGGAAA
Sbjct: 2   ADLQKIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAGP-----------AGGGAAA 61

Query: 112 APAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVS 171
           APAEE    KT F + L +  E   KI++IKEVR+ T  GLKEAK+LVE AP  +K GV+
Sbjct: 62  APAEE----KTEFTVVLASAGEK--KIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVN 121

Query: 172 KEDAEKIIEKMKAIGAKVVME 193
           K++AEKI  +++  GAKV ++
Sbjct: 122 KDEAEKIKVQLEKAGAKVELK 125

[Close]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Match: RL7_BARBK (50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplL PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.100e-16
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1


		  
Query: 52  AKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAA 111
           A +  I  ++SNLT+LE A+L+ LL +K  V     V++              A  G+AA
Sbjct: 2   ADLAKIVEDLSNLTVLEAAELSKLLEEKWGVSAAAPVAV--------------AAVGSAA 61

Query: 112 APAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVS 171
           APA E   EKT FD+ L  G     KI +IKEVR+ T  GLKEAK+LVE AP  +K GVS
Sbjct: 62  APAAE---EKTEFDVVLVDG--GAQKINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGVS 121

Query: 172 KEDAEKIIEKMKAIGAKVVME 193
           K++AEKI  +++A GAK+ ++
Sbjct: 122 KDEAEKIKAQLEAAGAKIELK 123

[Close]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Match: RL7_RHILO (50S ribosomal protein L7/L12 OS=Rhizobium loti (strain MAFF303099) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.300e-16
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


		  
Query: 52  AKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAA 111
           A +  I +++S LT+LE A+L+ LL +K  V     V++   G           G  AAA
Sbjct: 2   ADLAKIVDDLSKLTVLEAAELSKLLEEKWGVSAAAPVAVAAAG-----------GAAAAA 61

Query: 112 APAEEEKKEKTAFDLKLEAGFEAGA-KIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGV 171
           APAEE    KT FD+ L    +AGA KI +IKEVR+ T  GLKEAK+LVE AP  +K GV
Sbjct: 62  APAEE----KTEFDVVLT---DAGAQKINVIKEVRAITGLGLKEAKDLVEAAPKPVKEGV 121

Query: 172 SKEDAEKIIEKMKAIGAKV 190
           SK DA+K   +++A GAKV
Sbjct: 122 SKADADKFKAQLEAAGAKV 122

[Close]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 143.7 bits (361), Expect = 1.200e-34
Identity = 84/152 (55.26%), Postives = 114/152 (75.00%), Query Frame = 1


		  
Query: 42  ESTPKSPPPAAKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRG 101
           + T    PP  ++  + +EIS+LTLLE+++L S++ KK  + +LP V++M PG G  + G
Sbjct: 59  DPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGV-G 118

Query: 102 MGGAGGGAAAAPAEEEKK-EKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVE 161
           +GG GG  + +   EE K EKT F++KLE+ FEA AKIKIIKE+RSFTD GLKEAK LVE
Sbjct: 119 VGGGGGMVSQSGVSEEAKVEKTVFEIKLES-FEASAKIKIIKELRSFTDLGLKEAKALVE 178

Query: 162 KAPAVLKTGVSKEDAEKIIEKMKAIGAKVVME 193
           K PA+LK G+SKE+ EKI+EK+KA+GAKVV+E
Sbjct: 179 KTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 143.7 bits (361), Expect = 1.200e-34
Identity = 94/192 (48.96%), Postives = 128/192 (66.67%), Query Frame = 1


		  
Query: 1   MKYLRFISPKFTTLQNPRPNFLGFIQPSNANSTRNHTTPAQESTPKSPPPAAKITSIANE 60
           M+ LR IS  F+ +          +Q     S R++++PA +S          ++ I NE
Sbjct: 1   MRNLRIISSHFSRVLKSTETRSSSVQLFTIQS-RSYSSPATQSE--------NVSKIVNE 60

Query: 61  ISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKE 120
           +SNLTLLE  DLT +L +KL + +LP+++ MMPGM  SL G  GA   A     E++K+ 
Sbjct: 61  LSNLTLLETMDLTEILRQKLNISELPVMAAMMPGM--SLPG-SGASKSAGGEGKEKKKEA 120

Query: 121 KTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLKTGVSKEDAEKIIE 180
           KTAFD+ L+A ++A +KIK+IKEVR+ T  GLKEAK+LVEKAP +LK GVSKE+AEKIIE
Sbjct: 121 KTAFDVMLQA-YDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIE 179

Query: 181 KMKAIGAKVVME 193
           K+KA+GAKV ME
Sbjct: 181 KLKAVGAKVAME 179

[Close]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 100.9 bits (250), Expect = 9.000e-22
Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 1


		  
Query: 48  PPPAAKITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIVSLMMPGMGFSLRGMGGAGG 107
           P P++KI  +A  I+ L+  E   +   L + L +    ++S      G   +   GAG 
Sbjct: 54  PQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMIS----SDGIGAKQDTGAGN 113

Query: 108 GAAAAPAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKAPAVLK 167
                   EEKKEKTAFD+KLE  F A  KIK+IKEVR+FT  GLKEAKELVEK PA+LK
Sbjct: 114 -------VEEKKEKTAFDVKLEK-FNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILK 173

Query: 168 TGVSKEDAEKIIEKMKAIGAKVVME 193
            GV+KE+A +II K+KA+G   VME
Sbjct: 174 QGVTKEEANEIIAKIKAVGGIAVME 186

[Close]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 97.4 bits (241), Expect = 9.900e-21
Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 1


		  
Query: 35  NHTTPAQESTPK----SPPPAA--KITSIANEISNLTLLEVADLTSLLGKKLEVKDLPIV 94
           + TTP   +T      + P A   K+  IA+++  L  +E+ D + L   K        +
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHK--------I 76

Query: 95  SLMMPGMGFSLRGMGGAGGGAAAAPAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFT 154
            L   G   ++ G      G A+A  E +  EKT FD+KLE  FEA +KIK+IKE+R+FT
Sbjct: 77  GLNRYGSAVAVTG----SVGDASASTETKTAEKTTFDVKLEK-FEAASKIKVIKEIRAFT 136

Query: 155 DFGLKEAKELVEKAPAVLKTGVSKEDAEKIIEKMKAIGAKVVME 193
           D GLKEAK LVEKAP ++K G++KE+AEKI+EK+KA+GA V +E
Sbjct: 137 DLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.300e-17
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1


		  
Query: 103 GGAGGGAAAAPAEEEKKEKTAFDLKLEAGFEAGAKIKIIKEVRSFTDFGLKEAKELVEKA 162
           G +GGGA     E  K EKT F++KLE+ FEA AKIKIIKEVR     GLKEA +LV KA
Sbjct: 7   GQSGGGAN----EGAKAEKTVFEVKLES-FEARAKIKIIKEVRRIIGVGLKEAMKLVVKA 66

Query: 163 PAVLKTGVSKEDAEKIIEKMKAIGAKVVME 193
           P VLKTG+SKE+ E+++EK+ A+GA+ V++
Sbjct: 67  PTVLKTGLSKEEGEEVVEKLNALGAEAVLQ 91

The following BLAST results are available for this feature:

BLAST of Spo01101.1 vs. NCBI nr
BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
BLAST of Spo01101.1 vs. TAIR (Arabidopsis)

BLAST of Spo01101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902227245\|gb\|KNA20623.1\|	2.6e-95	100.	hypothetical protein SOVF_0506...	[more]
gi\|731354946\|ref\|XP_010688875.1\|	1.6e-73	81.9	PREDICTED: 54S ribosomal prote...	[more]
gi\|743839146\|ref\|XP_011025868.1\|	5.4e-45	57.6	PREDICTED: 54S ribosomal prote...	[more]
gi\|566181124\|ref\|XP_002310275.2\|	9.3e-45	57.8	hypothetical protein POPTR_000...	[more]
gi\|728828590\|gb\|KHG08033.1\|	1.2e-44	57.5	50S ribosomal L7/L12 [Gossypiu...	[more]

BLAST of Spo01101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RMC9_SPIOL	1.8e-95	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BM30_BETVU	1.1e-73	81.9	Uncharacterized protein OS=Bet...	[more]
B9HFA5_POPTR	6.5e-45	57.8	Uncharacterized protein OS=Pop...	[more]
A0A0B0N0W8_GOSAR	8.4e-45	57.5	50S ribosomal L7/L12 OS=Gossyp...	[more]
A0A0D2SN82_GOSRA	1.1e-44	56.5	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo01101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL7_BRASO	3.7e-17	44.6	50S ribosomal protein L7/L12 O...	[more]
MNP1_SCHPO	1.1e-16	39.7	54S ribosomal protein L12, mit...	[more]
RL7_BRADU	1.1e-16	44.6	50S ribosomal protein L7/L12 O...	[more]
RL7_BARBK	3.1e-16	43.9	50S ribosomal protein L7/L12 O...	[more]
RL7_RHILO	5.3e-16	46.0	50S ribosomal protein L7/L12 O...	[more]

BLAST of Spo01101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G70190.1	1.2e-34	55.2	Ribosomal protein L7/L12, olig...	[more]
AT4G36420.1	1.2e-34	48.9	Ribosomal protein L12 family p...	[more]
AT3G06040.1	9.0e-22	47.5	Ribosomal protein L12/ ATP-dep...	[more]
AT4G37660.1	9.9e-21	42.6	Ribosomal protein L12/ ATP-dep...	[more]
AT2G03130.1	2.3e-17	57.7	Ribosomal protein L12/ ATP-dep...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 51..192 score: 17
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 53..109 score: 1.
IPR008932	Ribosomal protein L7/L12, oligomerisation	unknown	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 53..124 score: 3.9
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 125..191 score: 1.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 124..190 score: 3.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 118..191 score: 3.9
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 124..192 score: 7.32
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 41..96 score: 1.8E-43coord: 115..192 score: 1.8
None	No IPR available	PANTHER	PTHR24089:SF321	GM03767P	coord: 41..96 score: 1.8E-43coord: 115..192 score: 1.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0032502	developmental process
biological_process	GO:0044206	UMP salvage
biological_process	GO:0006223	uracil salvage
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0004845	uracil phosphoribosyltransferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19288	0.74	Barchart \| Table
Spo26006	0.72	Barchart \| Table
Spo09536	0.72	Barchart \| Table
Spo05733	0.71	Barchart \| Table
Spo01305	0.71	Barchart \| Table
Spo00405	0.70	Barchart \| Table
Spo21808	0.69	Barchart \| Table
Spo00872	0.69	Barchart \| Table
Spo22999	0.69	Barchart \| Table
Spo03906	0.69	Barchart \| Table
Spo05942	0.69	Barchart \| Table
Spo06362	0.69	Barchart \| Table
Spo20387	0.69	Barchart \| Table
Spo10493	0.68	Barchart \| Table
Spo13180	0.68	Barchart \| Table
Spo23249	0.68	Barchart \| Table
Spo25817	0.68	Barchart \| Table
Spo23384	0.68	Barchart \| Table
Spo18111	0.68	Barchart \| Table
Spo07915	0.67	Barchart \| Table
Spo12302	0.67	Barchart \| Table
Spo27163	0.66	Barchart \| Table
Spo03064	0.66	Barchart \| Table
Spo09149	0.66	Barchart \| Table
Spo15302	0.66	Barchart \| Table
Spo22715	0.66	Barchart \| Table
Spo23352	0.66	Barchart \| Table
Spo22530	0.65	Barchart \| Table
Spo17491	0.65	Barchart \| Table
Spo26986	0.65	Barchart \| Table
Spo02221	0.65	Barchart \| Table