Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAATCAAATCAAAAGGCCCAAGTCCGAACCAAATAGCCAAATAGGCGAATCCACTTGGTCCTTCTTCCATCGCCATTAACGCACCCAAATTCAGAGCTCACCAAAACACCGAAATAGAGAGAGAAAGAGAGAGAAATGGGGGTGATGCAGAGGCTCAGGATGTTTGTCGCTGAAGAACCAGTCGTCGCTGCTTCTTGCATTATTGGTGGAATTGGTATCTTTCTTCTTCAAAGAAAACCCTAGTTTTTACTTCCCGGATTCAGTTTCATCAATCTCATTTTGATCAATTTGTCAATTAGATTTCAATTCATTATCTGATGATGTTTCTGATTGATCTCACTTTTACATGCTTTTTCACTTTGAAGAGTAATTAGCCGAATTAATTGAAAATTTGTACCTGCGATTTTCCGTAATATGGAATTTGGATCATTTGCCTGAATTAACATCCAAGAGTATGGAATTTTTAATTTTCAGTTACTTTAATGTGTTCCAAAGTAATAAGGAAGGTTGAATTAGCTAGACAATAAACATAGATCATTTATTTGGGAATAGTGAGAGTTTATTTGATGATTTTCATTATCTTTTCTAATAGGTAATCCAAGAACAATTTCCTAGTACTTGTTGTCTGCACAGAAGTTTGTTGGTGTAAAACGTTCTTTTTAACAGTATAATGCTGAACCACGTTGAGGGCTTGAAGGACTTTCATCAGATGCAAATAAATTTGGAGCTCAAGCATTAACTTTTTAGGACATCGTTTACGGGTTTTACTATTAGTTGTTTAGAGGTCATTGGATTGTTATCAGCGTTTAGGTCAGGTCGGGAGTAAGGTTAGTTCTTTAGTCTTTTTGTTGGCTATTGGAGTATCTTAGGATGTTGGTATCCGGTCTAATAGTGGTTTTGAGGTGACAAGAACATTCTATAACATGTTGGATTTGGAAGCGATTTCACAACCAAAATCAGAGCTAATTGACCTATTGGAAACATATGTGAAGTGTTTTCCATTCGGTAATAGTTTCATGGTGGTGTTCTTCAGTTTATTATGACTTTTTTTAGAAATTGAACACCAATTGGTTGAATAGTGCATAACTGGTATGAATTGGTGGAGAAGAGCTTAGTAGGGTTGCATGTCGTGCAGGGGGAAACGGTCAATATTTTGGGAATTTGACACTATAACGAACCCTTCTTATCTGGTTATTAGTTTTTTTCTGGCAAGGGAACTAGAATGTGTTGGGAATTTAAGATTTGGTGTTGGAGTCCATGTTCTTCCTCAATTTTAATGTTAATGTACTATTTTTAGTTGTAATTCCAAAGAACATTGAATTTGGAACATGTTTTAGCTCAATGGAAACTGCCCAAAGTAAGTTAGAGGTTGTAAAGTGACATTTTGTTCATCAAAGGCAATGAGGATTCATGTTTAATACAATGTGTAAATGCTTGTATTCAAATGCAAAATACAGTATAACAGTGTGTTTGGGTAAATGGATTTGAAGAGAAAGAAAGGGGAGAAGAGTGATTAATTTATTTTGCTCTATTAGGATATGTAGTGGAAGCATAAAGGCTAGGGTAATAAAAGGTGCTGATTTTCTCTCCCTCTTATTCAGTCAAATCCTCCCATAGTTGGAAAGATTTGGAGGGAAAGCACAAACCCACTTCTCCTTCCCCCTCTGTTGCTGTCCAACCTCCAAACACGCTGTAAATTGATTTGTATGCCAGGCCTGTTAACAGCCATTTATTCTAAACTGATACAGTGTGCTTTTGATACTTTAGTTTCTCAGTAAATGTGTTCTCACTGTGTTTTTCTGGTCTGATGCTTCAGGACTTTTTCTTCCAGCTGTGGTGAGGCCTATGTTGGATTCTATGCAAGCAGCTAAGCAAGTACCTCCACCCCCTTTGAGTGATGTAAGTGTCATTTATAAATTAAGAAGTATTACTCTAGAACCAGAACTTCCTGTGTATTACAATTAACACTAAATTCCTCCTCTTCTGATCAAACTTTAGCAATCTGCTGTTGAAGTTTAACATGAACTACACAACGGTATTAGGGAGAGGGGCACTTTAGAGAGTAGCATTATAATAAGTTGTTAATAGTTTGAAAAAGATGAAGATAGTTAGTGAGGGCAGACACTCTATAAAAGGAACAAATGAGAGAGAGAAATCATGCAGATATTCGGGGGAAGGGCACTTTAGAGAGTAGCATTATAATAAGTTTTTCATAGTTTGATATCTTTGAAGAAGAAAAAGATAGTTACTGAGGGTAGAAGCTCTATAAATGGAACAAATGAGAGAGAAATCATGCAGATATTAGGGGGAATGGCACTTCAGAGAGTAATATTTAATAACCTTCTTTTAGTTTGAAGAAGAAGATACTTACTTAGTGAGAGTAGAGCTCTATAAAAGTATAAATGGACCAAACGAGAGATATAGAGATCATGCAGAATATTATTCAGAATTGATTGTTAGTTATTTACACTTTGGGAGAGAGCGAGCCTCTCAAATGCTTGTAACTGTCCTACAGTATTGCAGTTTTCCAGTTATTGATCAATCAAATTTCTTCTTCCTCTAATCCTGACGTTCCATCTTGTCCAAATCTCAGCATGTTGATATATTTACTCCCTCCATTGTGGACCCTATTGCCTGGTGTTCTTTTGTGTATTGGCACTATTTTCTTATTGCAACCCCCATTTGTGGTAGTTATCAAATGCCAATCTGTCAAAAGCATGTCTGGTTCATGGAGTATTCTGTTGTTTGTAACTTTGTTTTAAACTTTTGGTCCATCATTGACCCGGCCGTGTACTCCCAAGGTTGTTCTCTGCTCTAGCTCAGATCCAAATGAGCAGAAAAAATACCTTGGCAAACCTAGCTCTGGGTACACTCGGGTGATAATTGGAAAACTGGAATTGTATAAGTACATGATGTGGATGCTCAAATTAGACTCCGCGCTTTCTAGTTCAAATCGTTTCTGCATCTTGGTGCCAAGTATTCTTTCATGCTTATATCCTGTGTCCTAAATGACGGTGAATGCTTTCTTTGCTGATTTTTAGGTGTTGGTGTGTGTTAGGAGTAAGTTTGTACTTCATTCTGGACGACTGAATGCCCAAATTAGTTGTGTGCCTGTTTCACGCTATTGTATCTCACCCAATTTTGGGTAATTATGCAGAACACTTATATGGTGAAAATATTTGTCGTCTGTTTTTGTAGGTTGTTGCTGGTGTTGTTGGTAAAAAAGAATGAAGTGGATCATGGATGTGAGTCCTGATTTTTCTTAACTGTTCCCTTGTGTTCTTTTAATGTGAGATATTCTCTCATAGGAAATAAGCCATTTTTGTATGAGCTAGATGTACTGTATTTCATGTTTCTCCGATTTGATTTTAATGGAAAATGTTTAGTATGTCTTGTAAGTTATCTGTTAAATGTGAAACCTGTTTCTTGCATCTTTTCTAGCTGCAGATAGAAAATTCACCAGCTTGTGTTCTTTCATATCAATAATTTTGCTTAAATTCTGAGAAGTTACCCTAGAAAATTAACAAATACTCTTAAAATGACGAGTTAGATTTGTGTTATAGTTAGATTTGGGCCAAGATTGTGAGCCAACTCGGTTTGAGGCCCGCATATACATTCACGTATGTAGTAAAAGAAAACAATAGCAAGAAGCTTTTTTAGGGAGCCATCCACCATCATTTTGATGGCTACTGGGACGTTAAGAGCATGAATAAGGGGAGACTCTTAGGTAGCTCTTAAGGAGAGAGAAAAATTAAGAACTAGATCTTTGGTAAGAAATGGTAGACTTTTAATTTGAGTTTGGAATAGAAAATTCTGAAATAAGAGCTAGCTTTTACAAATAAGAGCTAATGTCAAGTTATTTTTTTTGGCATAAAAATAAAGAGGGTAAGAAAGCACAAGAGCTAGTGTTAAGAGTTAGTCCATTTCCACAACTTTTGGGAGGAGACTCTTATTTGGAGTTGGTGCATAAGTGTCATATGAGAGAGATTAAGAGTCTACTAAATAAGAGTCTCCCCTTATTATTGCTCTAACTTTCTCTTCGATCCCCCTAATTCATATCATGTGAGAGCAATTCTACATGTATATTGGTGTAATGTTGATCTCAATGCTAAACTTCTATGTACAATAGGCACCTTCTAAAGTGCGGATAACCTTTCCTTTCCATTTTGGTTTTCTACTGCTAACAGTCTTCTTGCTCGACCTCCCAAGTCCCAACCATAGAACTCCATTATAAATTTATAAGCAATACATCAACCAAGAATGCCATTAGTTCTGCTTAATTTCAGTGCTTTTTCGACTTGGACAAGTAAGGATGATGGAAGTCCACTATATCAATAATGCTATGTACTATTCATTTCTACACAACATTAGGAACTTTTATGCTTAATGGCAACTTCTGGGATTGTGCATCACATGAGTGGGAAAACAGTTCACCTCCATTTGTTCCCCTTTAAGGGCACGCTTGGATTCGGTGTAATGGATTGTTGGGGTAATAAAAGTCAAACCACCATAATAAAAGGACAATGAAGGTGAATTGAGGTGGTTGCAAGGAGGGTGGTGTGGTGGTATTGTGATGAGAAGGTGTGGTAGTGGTGGTGTTGTGAGGAGAAGGGAGGAAGGGGGGAAGTAATTACCCCAAATGAGGGTAATAATCACCCTAGTGGGATGGTGGGTAACTATTCCCCCCATGATGAGATATTTGTTCCCCTTTTCCTTTTATTTTCTTCTTGCCAACACTAGTTTGTTCCCTTTGCCACCACTTCATCCCCTCATCATTACCTTCAATTACCTTAGTTTGACTTTTATTACCCTTTGAATACATTACCCTTAATCCAAGCATGCCCTAATGGGAAAACAGTTCAATTACATTCTTTCTCCATAAACAGGGCTAAACAAAAACTGCAAAGGAAATTGTTCAGCAAAAGACTTTCAGAAAGCACTCCTTATCCATCTTCGGTGCTTCAACTAAAGATGGCCATGTGCCGGGCTGGGTTGGGCTTCAGGCTGAGCCCAAGGGTCGGGGGTCTAAATGGGCTGGGGCCACTCTGCATTGTTTTGGGCCGTCTGGGTTGAAAAGTTCAAAACAGGTCCCACGGGTTGCTGGGCCGGGCCGGGCATCGTGCCTAATCCTAATTTTACTGTTGTGCTTGGTTGTGTCGAGTTGAGTGGCACAGTGCCTTGTTGTGCTTTTTTCAAAAAAAGTGTGGCCCATGCATTGCCCACGACTTCGTGCTCGTATCGGGCTATGTTTTTTTGTGCCGGGTCGGGCCGGCCCGGCCCACGGCCATCTTTAGCTTCAATCTTATTCCTCGCTTAAAAGAGAGGAGGAGAAGGGGTCTGTTTTAGCGAGTAACGCCTTCTTTAGTATTCCCTCCGTCCTACTTTTAACGCAAGGAAATAACTGAAAGACTGACCAAACCTACATTTTAGAAGTTGTCTTATTGATTTGTTAGGATTCTTGACCAGTATTAATTAAGTGCAGTTGCTTTAATTTGTTAGTCCATGCCATCAATTTATGGATATGAAAGCGAATATTGATTGAGGTATTTTGGAAGTTGCTCATCTGCGCACTCCTTTAATTGACCTGGTTTAATGAATCTGCAGTATGATGTGTGGTGGATTTTCTGTAATGCTCTGTTTAATTAAATTGTTGCGTTTAATTGACCAGGACTGCACCTTAAGAAGACCCTATAATTTAGTGTCATTAAAATGTTGAATAAGGTTAACAGAAGATGTTAAGATGAAAGTTCAAATTCATTGAGAACACAATAGGTATTAAACCTGAAATAGCATTTCTGTTCCGTGACAGATTCGTGAAAGTGTCATTTATATACATTATCCGATGATCCTAAACCTTCAGAGTTCGCCTTCAGACTTTATAAATGGCTACCAGAACTTTATTTTCATGGACTCTGCAGCCTGCCTTTAAACTCCTTTCATCTTGTCTTTCCTTGTGTGGTTCGAAGGTGTGATATGGTGCAAGTGTGGTGCTTAATTGCTTTTAGACTTGTGGTGGTTGGACTAAGTAGAATTCGAGGAATATGATGGGGTTTTGCTACAAGTGCAGTTGACGTGATTATCTGTTATCTGGTTTGTTCTTCAGTGGGGTGTTCATATTTGTTACCTGGTGTGTTCTTCAGTAGGCCTTAGTTAACAGTCACTCGTCGTATCAGTTGGATGAGCAATGTGACATGACTTTTAGAGATGTCATTGTTGTTTGTTTGTTTGTTCATTCTTAAGCGTCGTAGAATTAAGGAAATTACTACCACCAATAACATCCCTTTAATCTTACTTTCTGGTTATTTCTTGTCCAATGATGCCGTGTGGTTAGGGACTTAG TGAAAATCAAATCAAAAGGCCCAAGTCCGAACCAAATAGCCAAATAGGCGAATCCACTTGGTCCTTCTTCCATCGCCATTAACGCACCCAAATTCAGAGCTCACCAAAACACCGAAATAGAGAGAGAAAGAGAGAGAAATGGGGGTGATGCAGAGGCTCAGGATGTTTGTCGCTGAAGAACCAGTCGTCGCTGCTTCTTGCATTATTGGTGGAATTGTTGTAATTCCAAAGAACATTGAATTTGGAACATGTTTTAGCTCAATGGAAACTGCCCAAAGACTTTTTCTTCCAGCTGTGGTGAGGCCTATGTTGGATTCTATGCAAGCAGCTAAGCAAGTACCTCCACCCCCTTTGAGTGATTTAGATTTGGGCCAAGATTGTGAGCCAACTCGGTTTGAGGCCCGCATATACATTCACCGTCGTAGAATTAAGGAAATTACTACCACCAATAACATCCCTTTAATCTTACTTTCTGGTTATTTCTTGTCCAATGATGCCGTGTGGTTAGGGACTTAG ATGGGGGTGATGCAGAGGCTCAGGATGTTTGTCGCTGAAGAACCAGTCGTCGCTGCTTCTTGCATTATTGGTGGAATTGTTGTAATTCCAAAGAACATTGAATTTGGAACATGTTTTAGCTCAATGGAAACTGCCCAAAGACTTTTTCTTCCAGCTGTGGTGAGGCCTATGTTGGATTCTATGCAAGCAGCTAAGCAAGTACCTCCACCCCCTTTGAGTGATTTAGATTTGGGCCAAGATTGTGAGCCAACTCGGTTTGAGGCCCGCATATACATTCACCGTCGTAGAATTAAGGAAATTACTACCACCAATAACATCCCTTTAATCTTACTTTCTGGTTATTTCTTGTCCAATGATGCCGTGTGGTTAGGGACTTAG MGVMQRLRMFVAEEPVVAASCIIGGIVVIPKNIEFGTCFSSMETAQRLFLPAVVRPMLDSMQAAKQVPPPPLSDLDLGQDCEPTRFEARIYIHRRRIKEITTTNNIPLILLSGYFLSNDAVWLGT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01209.1 vs. NCBI nr
Match: gi|902201187|gb|KNA13928.1| (hypothetical protein SOVF_112230 [Spinacia oleracea]) HSP 1 Score: 93.2 bits (230), Expect = 3.500e-16 Identity = 54/78 (69.23%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of Spo01209.1 vs. NCBI nr
Match: gi|731311244|ref|XP_010695961.1| (PREDICTED: uncharacterized protein LOC104908516 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 91.7 bits (226), Expect = 1.000e-15 Identity = 53/78 (67.95%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of Spo01209.1 vs. NCBI nr
Match: gi|702333590|ref|XP_010055003.1| (PREDICTED: uncharacterized protein LOC104443353 [Eucalyptus grandis]) HSP 1 Score: 73.6 bits (179), Expect = 2.800e-10 Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
BLAST of Spo01209.1 vs. NCBI nr
Match: gi|674244670|gb|KFK37435.1| (hypothetical protein AALP_AA4G256700 [Arabis alpina]) HSP 1 Score: 73.2 bits (178), Expect = 3.700e-10 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
BLAST of Spo01209.1 vs. NCBI nr
Match: gi|764624060|ref|XP_011468926.1| (PREDICTED: uncharacterized protein LOC101307919 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 73.2 bits (178), Expect = 3.700e-10 Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R338_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112230 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.400e-16 Identity = 54/78 (69.23%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3C1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002850 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 7.000e-16 Identity = 53/78 (67.95%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Match: M4CJZ4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.600e-10 Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Match: Q9ZPY5_ARATH (At2g46540/F11C10.23 OS=Arabidopsis thaliana GN=At2g46540 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 2.600e-10 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Match: A0A078CTH2_BRANA (BnaA05g01290D protein OS=Brassica napus GN=BnaA05g01290D PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.600e-10 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
BLAST of Spo01209.1 vs. TAIR (Arabidopsis)
Match: AT2G46540.1 (unknown protein) HSP 1 Score: 73.2 bits (178), Expect = 1.300e-13 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01209.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01209.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01209.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo01209.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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