Spo01217 (gene) | SpinachBase

Overview


Name	Spo01217
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 58139097 .. 58139889 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGTGGTAACTGGAAAGGTAACCGTAACAGTAGCAGCCAAGGAAGAATACGGAACGCGCACACAAAAACACACACCTCTTCTTACCTTCCACCATTTCACTCTTTTCGAGACTTTTCCTTTCTCTTTCTCTCTCTCTCTCTTTCTTCTTTAATTTGGTTTTTCTTCCATTAATTATTCATTCATTACCAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGGTTAGTGTCTTCGCAAATCCCTACCCACCTTATTCGCTTTTTTGTTTGCTTCCCACTTTATTTTTCTCCATTTTTTATACTTTATGTGTTCACATTCTTTGTTTTTCTGGGTAATTATGTTTTCATATTATTATATTTTTTCTTCTTCTTGAAATTGGTTTTGCTCCCTTTTCGCCGTGATCTATGTGTGTTTTCTTCCTTCTATTCTGATAATTAATTATTCATTTTGTACTGGGTTGATGCTGATTTTTTTTTAATATAATTACTTTTAGTCAATTTTTATTTGAATTATGTTCAATTAGTTAGAATTGGGATCTGTGTTTTGTGGGTTGATAACTTGATATGATAAACTGAAAATTTTGTTCGCCTTTTTGTTTGTATAGAGAACTGAATAG

mRNA sequence

ATGAGCGGTGGTAACTGGAAAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGAGAACTGAATAG

Coding sequence (CDS)

ATGAGCGGTGGTAACTGGAAAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGAGAACTGAATAG

Protein sequence

MSGGNWKVNSIQFNFNFKIPHVITTPFVLVFICSIFHHYFIHTTPSLLPSTLERESGERNTKTVNSPRIPTSSPQRTE

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01217.1	Spo01217.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo01217.1 vs. NCBI nr
BLAST of Spo01217.1 vs. UniProtKB/TrEMBL
BLAST of Spo01217.1 vs. ExPASy Swiss-Prot
BLAST of Spo01217.1 vs. TAIR (Arabidopsis)

BLAST of Spo01217.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo01217.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo01217.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo01217.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071554	cell wall organization or biogenesis
biological_process	GO:0006810	transport
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0000785	chromatin
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05307	0.79	Barchart \| Table
Spo25573	0.74	Barchart \| Table
Spo14630	0.73	Barchart \| Table
Spo15461	0.73	Barchart \| Table
Spo13783	0.73	Barchart \| Table
Spo18605	0.72	Barchart \| Table
Spo17024	0.72	Barchart \| Table
Spo08478	0.72	Barchart \| Table
Spo26610	0.72	Barchart \| Table
Spo26640	0.71	Barchart \| Table
Spo01068	0.71	Barchart \| Table
Spo02918	0.71	Barchart \| Table
Spo25008	0.71	Barchart \| Table
Spo25405	0.70	Barchart \| Table
Spo15843	0.70	Barchart \| Table
Spo09387	0.70	Barchart \| Table
Spo10898	0.70	Barchart \| Table
Spo10835	0.70	Barchart \| Table
Spo03362	0.70	Barchart \| Table
Spo25633	0.69	Barchart \| Table
Spo16188	0.69	Barchart \| Table
Spo02890	0.69	Barchart \| Table
Spo05402	0.69	Barchart \| Table
Spo26355	0.69	Barchart \| Table
Spo08935	0.69	Barchart \| Table
Spo24675	0.69	Barchart \| Table
Spo26858	0.69	Barchart \| Table
Spo24331	0.69	Barchart \| Table
Spo27364	0.69	Barchart \| Table
Spo21833	0.69	Barchart \| Table
Spo22004	0.68	Barchart \| Table
Spo16240	0.68	Barchart \| Table
Spo13161	0.68	Barchart \| Table
Spo00526	0.67	Barchart \| Table
Spo01104	0.67	Barchart \| Table
Spo01187	0.67	Barchart \| Table
Spo01925	0.67	Barchart \| Table
Spo05235	0.67	Barchart \| Table
Spo09554	0.67	Barchart \| Table
Spo09671	0.67	Barchart \| Table
Spo15317	0.67	Barchart \| Table
Spo17979	0.67	Barchart \| Table
Spo18943	0.67	Barchart \| Table
Spo24065	0.67	Barchart \| Table
Spo24425	0.67	Barchart \| Table
Spo24430	0.67	Barchart \| Table
Spo26697	0.67	Barchart \| Table
Spo18578	0.66	Barchart \| Table
Spo02480	0.66	Barchart \| Table
Spo05657	0.66	Barchart \| Table
Spo14914	0.66	Barchart \| Table
Spo14350	0.66	Barchart \| Table
Spo13171	0.66	Barchart \| Table
Spo03191	0.66	Barchart \| Table
Spo11524	0.66	Barchart \| Table
Spo20912	0.66	Barchart \| Table
Spo21344	0.66	Barchart \| Table
Spo10890	0.66	Barchart \| Table
Spo09948	0.66	Barchart \| Table
Spo22086	0.66	Barchart \| Table
Spo22167	0.66	Barchart \| Table
Spo23332	0.66	Barchart \| Table
Spo23787	0.66	Barchart \| Table
Spo00793	0.66	Barchart \| Table
Spo24325	0.66	Barchart \| Table
Spo09605	0.66	Barchart \| Table
Spo27081	0.66	Barchart \| Table
Spo09434	0.66	Barchart \| Table
Spo08407	0.66	Barchart \| Table
Spo07802	0.66	Barchart \| Table
Spo06164	0.66	Barchart \| Table
Spo19690	0.65	Barchart \| Table
Spo01511	0.65	Barchart \| Table
Spo22436	0.65	Barchart \| Table
Spo22451	0.65	Barchart \| Table
Spo08603	0.65	Barchart \| Table
Spo13963	0.65	Barchart \| Table