Spo01224 (gene) | SpinachBase

Overview


Name	Spo01224
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP synthase subunit delta
Location	chr2 : 58031678 .. 58033485 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGGATGGAAATCGTCCTTGCGGCTATAACAAATCGTTAGACCGTCTCTCCGAAAAGGCTGTATATTCTAGCGATGTGTGCGAGAGATATCCCACGGTCCAAGATATTCATAACGATGGTAGTTTTGATGAAGGAATACATTTTTTGATTCAATTAGTTATGTATTCGTTAAATTCGATTTCTATTATAAATGTCGTATGAATTTTTATTTAATGAACTGATTTTACATTCAAAAATAAAAGCTTTAACGAAAGTGCAAATGACCAATAGGGCGAAGGTTTGGGCCTAGCGAGGGGAATTAAATTTCACATGGAGGCATGAAGCCCTGACCAAAAGCCCTTTAAACCTGAAAATAGCCTCGACCGAAAATCTAGTTTAGTAGATCTATGGGCCATTACCCATAACCTTTCTATAGGTTAAAATTGTCAACTAATGGAGTTGTTAAAAAAGTGAATTGACCCGTTAACGTTTGATAAAATTTAAGTGACTAGTACAAATTTGATCCCCCACCAAATTCGATGGTTTGCATGGACATATTGAGTTATTGACTCCATTATTCAAGACGAGACATGACTCGAAACAAATTCACCCGATTTCAGAACTCTTTCAACTTTCACAAATTACACATTGTTTATTTATGTTAATAATGATAATTGCAATAATACTTATAATTATTGCGCAATATTTAGGATAATTGCGGTGAGTTTAAGATAAATTAAATATTCACAGTGCTATTAGTATAAGTCAAACAATCTTTTTAACAAATGTTTTTTAAGTTTTCGAAGTAAACACAACTTCAAACACATTCTTCATTTTTTGTACCCTTTATTTTTGTGGGAAGAAATTTCATTGATGATAGACAAAATTAATTAATTAAAAATTTGACTTGTTAACCACAAACATGACAAACACGAAGGCAAATACTCCACGAAAATGATTATGTGAAGGTTGGCAAACTTCATCAAAGAAAGGGACCCTTTCTTATTTTTGGCCTTTGGACGCAAAATCGACTATTCTTTTTATTTTTATTTTTAAAAAATGGGACAAATATTCTACTTGCTAAAAATGAAGCAAAGTAAAATCTTATCTTGAACAAATATACAAAACGAAGAACAAAATCTTTCAACCACCAAACCAATTTTACCCTCCAAAAATATGGATACCTTATCAAGCTCCATCCCAAACTTGCAAGTCCCTAAACCATTCAATCCCAATCACCACCTAAAACCCCCTCTTCTCCCCCACCACCACCACCAACGCCACCCATCCTCCACCACAAAGACCACCGCCACATCATCAATCTCCACACTCCCACAAAAAGACAACTTTACCCCTATCATCCCCTCTTACAATCCCCAAAGGACCCCTTCCCCTTCCAAGACCTCTACCTTATCATCACTGAAAGTAACACCCCCACGCGCCTCCATCCACCGCCGTGCAGCAAGTGGATACGCCGCTGCGCTTTTGAACATATCTCAGAACAACGGCACCGTTTTAAGGGTTGAAAAGGACGTGAGGAGGCTGTTAATGGCGGTGTTTCGGAACAACAATGGGAAAGTGAGTGAATTTATGAGGGATGAGTGGGTAGAGGAGAGGGAAAAGGGAGAGGTGGTGATAGAATTATTGGAAAGGGGGAAATTTGAGGGGCATTTGGTTGGATTAGTGAAGATGTTGGTTAATAAAGGCCAAAGTGTTGAGTTGGTAAAAGAAGTTCTTGAAGAGTTTATAAGGGTTTTTCATCAACTTATTGGTGGTAGTGTTGCTCATGCTCCAACTCCAACTACTAGGTTGTTTATGTCTTAA

mRNA sequence

ATGAATCGGATGGAAATCGTCCTTGCGGCTATAACAAATCAACAAAATCTTTCAACCACCAAACCAATTTTACCCTCCAAAAATATGGATACCTTATCAAGCTCCATCCCAAACTTGCAAGTCCCTAAACCATTCAATCCCAATCACCACCTAAAACCCCCTCTTCTCCCCCACCACCACCACCAACGCCACCCATCCTCCACCACAAAGACCACCGCCACATCATCAATCTCCACACTCCCACAAAAAGACAACTTTACCCCTATCATCCCCTCTTACAATCCCCAAAGGACCCCTTCCCCTTCCAAGACCTCTACCTTATCATCACTGAAAGTAACACCCCCACGCGCCTCCATCCACCGCCGTGCAGCAAGTGGATACGCCGCTGCGCTTTTGAACATATCTCAGAACAACGGCACCGTTTTAAGGGTTGAAAAGGACGTGAGGAGGCTGTTAATGGCGGTGTTTCGGAACAACAATGGGAAAGTGAGTGAATTTATGAGGGATGAGTGGGTAGAGGAGAGGGAAAAGGGAGAGGTGGTGATAGAATTATTGGAAAGGGGGAAATTTGAGGGGCATTTGGTTGGATTAGTGAAGATGTTGGTTAATAAAGGCCAAAGTGTTGAGTTGGTAAAAGAAGTTCTTGAAGAGTTTATAAGGGTTTTTCATCAACTTATTGGTGGTAGTGTTGCTCATGCTCCAACTCCAACTACTAGGTTGTTTATGTCTTAA

Coding sequence (CDS)

ATGAATCGGATGGAAATCGTCCTTGCGGCTATAACAAATCAACAAAATCTTTCAACCACCAAACCAATTTTACCCTCCAAAAATATGGATACCTTATCAAGCTCCATCCCAAACTTGCAAGTCCCTAAACCATTCAATCCCAATCACCACCTAAAACCCCCTCTTCTCCCCCACCACCACCACCAACGCCACCCATCCTCCACCACAAAGACCACCGCCACATCATCAATCTCCACACTCCCACAAAAAGACAACTTTACCCCTATCATCCCCTCTTACAATCCCCAAAGGACCCCTTCCCCTTCCAAGACCTCTACCTTATCATCACTGAAAGTAACACCCCCACGCGCCTCCATCCACCGCCGTGCAGCAAGTGGATACGCCGCTGCGCTTTTGAACATATCTCAGAACAACGGCACCGTTTTAAGGGTTGAAAAGGACGTGAGGAGGCTGTTAATGGCGGTGTTTCGGAACAACAATGGGAAAGTGAGTGAATTTATGAGGGATGAGTGGGTAGAGGAGAGGGAAAAGGGAGAGGTGGTGATAGAATTATTGGAAAGGGGGAAATTTGAGGGGCATTTGGTTGGATTAGTGAAGATGTTGGTTAATAAAGGCCAAAGTGTTGAGTTGGTAAAAGAAGTTCTTGAAGAGTTTATAAGGGTTTTTCATCAACTTATTGGTGGTAGTGTTGCTCATGCTCCAACTCCAACTACTAGGTTGTTTATGTCTTAA

Protein sequence

MNRMEIVLAAITNQQNLSTTKPILPSKNMDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSVELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01224.1	Spo01224.1	mRNA

Homology

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BLAST of Spo01224.1 vs. NCBI nr
Match: gi|902167460|gb|KNA07379.1| (hypothetical protein SOVF_172390 [Spinacia oleracea])

HSP 1 Score: 416.4 bits (1069), Expect = 3.500e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 88
           MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP
Sbjct: 1   MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 60

Query: 89  IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV 148
           IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV
Sbjct: 61  IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV 120

Query: 149 RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV 208
           RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV
Sbjct: 121 RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV 180

Query: 209 ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS 244
           ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS
Sbjct: 181 ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS 215

[Close]

BLAST of Spo01224.1 vs. NCBI nr
Match: gi|731311190|ref|XP_010693701.1| (PREDICTED: uncharacterized protein LOC104906598 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.9 bits (681), Expect = 3.400e-68
Identity = 152/218 (69.72%), Postives = 171/218 (78.44%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHL--KPPLLP-HHHHQRHPSSTTKTTATSSISTLPQKDN 88
           M+TLS+ I NLQVPKPFNP+HH   KP L   HHHH  HPSST KTTATSSI+T  QKDN
Sbjct: 1   METLSNPISNLQVPKPFNPHHHNHHKPTLFSSHHHHNHHPSSTAKTTATSSITTFQQKDN 60

Query: 89  FTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVE 148
           FTP+   Y+P+RTPSP            PPRASIHRRAASGYAAALL+ISQ NGTVLRVE
Sbjct: 61  FTPLYSHYSPKRTPSP------------PPRASIHRRAASGYAAALLDISQGNGTVLRVE 120

Query: 149 KDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKG 208
           KDVRRLLM VFR+NN +V EFM+DEWVEEREKG+VV EL+E+GKFEG+LV LVK+LV+K 
Sbjct: 121 KDVRRLLMVVFRSNNKEVKEFMKDEWVEEREKGKVVKELVEKGKFEGNLVNLVKILVDKS 180

Query: 209 QSVELVKEVLEEFIRVFHQLIG-GSVAHAPTPTTRLFM 243
            SV L+KEVLEEF+ VFHQLI    VAH   PTTRL M
Sbjct: 181 NSVLLIKEVLEEFLSVFHQLITVAGVAH--VPTTRLGM 204

[Close]

BLAST of Spo01224.1 vs. NCBI nr
Match: gi|596038782|ref|XP_007219859.1| (hypothetical protein PRUPE_ppa1027122mg, partial [Prunus persica])

HSP 1 Score: 107.8 bits (268), Expect = 2.600e-20
Identity = 86/219 (39.27%), Postives = 122/219 (55.71%), Query Frame = 1


		  
Query: 24  LPSKNMDTLSSSIPNLQVP--------------KPFNPNHHLKPPLLPHHHHQRHPSSTT 83
           LP  +MDTLSSS+  L+VP               P +P  H  PP       Q H  STT
Sbjct: 6   LPLSSMDTLSSSVSTLKVPTLLSSTSSRELHQFNPQSPRTHKLPP-------QSHLHSTT 65

Query: 84  KTTATSSISTLPQKDNFTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRAS-IHRRAASGYA 143
           K    S         N TP         + +PS  ++ ++L +    +S +HR+ A+GYA
Sbjct: 66  KPNLIS---------NKTPSFSHKLVSLSSTPSFLNSSATLSLNSSSSSDLHRKPATGYA 125

Query: 144 AALLNISQNNGTVLRVEKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERG 203
           AALL+I+Q N +V  VEKD++R L  +   +N +V   + + +V E+EKG+VV  + E+G
Sbjct: 126 AALLDIAQCNSSVHLVEKDIQRFLKLL---HNKQVQAALANPFVGEKEKGQVVNLVAEKG 185

Query: 204 KFEGHLVGLVKMLVNKGQSVELVKEVLEEFIRVFHQLIG 228
           +F  HLVGLVKMLV K + V +VKEVLEEF R++ +L G
Sbjct: 186 RFNRHLVGLVKMLVRKNK-VGIVKEVLEEFQRIYSELSG 204

[Close]

BLAST of Spo01224.1 vs. NCBI nr
Match: gi|645254555|ref|XP_008233093.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Prunus mume])

HSP 1 Score: 103.6 bits (257), Expect = 5.000e-19
Identity = 84/214 (39.25%), Postives = 119/214 (55.61%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVP--------------KPFNPNHHLKPPLLPHHHHQRHPSSTTKTTAT 88
           MDTLSSS+  L+VP               P +P  H  PP       Q H  STTK    
Sbjct: 1   MDTLSSSVSTLKVPTLLSSTSSRELHQFNPQSPRTHKLPP-------QSHLHSTTKPNLI 60

Query: 89  SSISTLPQKDNFTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRAS-IHRRAASGYAAALLN 148
           S         N TP         + +PS  ++ ++L +    +S +HR+ A+GYAAALL+
Sbjct: 61  S---------NKTPSFSHKLVSLSSTPSFLNSSATLSLNSSSSSDLHRKPATGYAAALLD 120

Query: 149 ISQNNGTVLRVEKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGH 208
           I+Q N +V  VEKD++R L  +   +N +V   + + +V E+EKG+VV  + E+G F  H
Sbjct: 121 IAQCNSSVHLVEKDIQRFLKLL---HNKQVQAALANPFVGEKEKGQVVNLVAEKGGFNRH 180

Query: 209 LVGLVKMLVNKGQSVELVKEVLEEFIRVFHQLIG 228
           LVGLVKMLV K + V +VKEVLEEF R++++L G
Sbjct: 181 LVGLVKMLVRKNK-VGIVKEVLEEFQRIYNELSG 194

[Close]

BLAST of Spo01224.1 vs. NCBI nr
Match: gi|703114577|ref|XP_010100695.1| (ATP synthase delta chain [Morus notabilis])

HSP 1 Score: 100.9 bits (250), Expect = 3.200e-18
Identity = 81/202 (40.10%), Postives = 111/202 (54.95%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTT-KTTATSSISTLPQKDNFT 88
           MD LSSS+  L+VP               H    RH   T  KTT + ++       N T
Sbjct: 1   MDPLSSSVSTLKVPTL-------------HSTTSRHELLTHFKTTPSKNLPYSSLLPNKT 60

Query: 89  PIIPSYNPQRTPSPSKTSTLSSLKVTPP--RASIHRR-AASGYAAALLNISQNNGTVLRV 148
           P   + NP    S S TS   SL    P  R  IH R  A+GYAAALL+++Q N +V  V
Sbjct: 61  PTFTTQNPFTPSSFSSTSPTRSLTAPSPSPRPPIHHRNPATGYAAALLDVAQANNSVDSV 120

Query: 149 EKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNK 208
            +DV RLL  +    N +V   +   +V E+EKG+VV +L E+G+F  HLV LVKMLV+K
Sbjct: 121 GRDVERLLNLM---RNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDK 180

Query: 209 GQSVELVKEVLEEFIRVFHQLI 227
            + V ++++VLEEF RV+ Q++
Sbjct: 181 KKDVGIIRQVLEEFERVYDQML 186

[Close]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJF1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172390 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.400e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 88
           MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP
Sbjct: 1   MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 60

Query: 89  IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV 148
           IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV
Sbjct: 61  IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV 120

Query: 149 RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV 208
           RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV
Sbjct: 121 RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV 180

Query: 209 ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS 244
           ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS
Sbjct: 181 ELVKEVLEEFIRVFHQLIGGSVAHAPTPTTRLFMS 215

[Close]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FX50_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002600 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.400e-68
Identity = 152/218 (69.72%), Postives = 171/218 (78.44%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHL--KPPLLP-HHHHQRHPSSTTKTTATSSISTLPQKDN 88
           M+TLS+ I NLQVPKPFNP+HH   KP L   HHHH  HPSST KTTATSSI+T  QKDN
Sbjct: 1   METLSNPISNLQVPKPFNPHHHNHHKPTLFSSHHHHNHHPSSTAKTTATSSITTFQQKDN 60

Query: 89  FTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVE 148
           FTP+   Y+P+RTPSP            PPRASIHRRAASGYAAALL+ISQ NGTVLRVE
Sbjct: 61  FTPLYSHYSPKRTPSP------------PPRASIHRRAASGYAAALLDISQGNGTVLRVE 120

Query: 149 KDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKG 208
           KDVRRLLM VFR+NN +V EFM+DEWVEEREKG+VV EL+E+GKFEG+LV LVK+LV+K 
Sbjct: 121 KDVRRLLMVVFRSNNKEVKEFMKDEWVEEREKGKVVKELVEKGKFEGNLVNLVKILVDKS 180

Query: 209 QSVELVKEVLEEFIRVFHQLIG-GSVAHAPTPTTRLFM 243
            SV L+KEVLEEF+ VFHQLI    VAH   PTTRL M
Sbjct: 181 NSVLLIKEVLEEFLSVFHQLITVAGVAH--VPTTRLGM 204

[Close]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Match: M5XHV8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa1027122mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.800e-20
Identity = 86/219 (39.27%), Postives = 122/219 (55.71%), Query Frame = 1


		  
Query: 24  LPSKNMDTLSSSIPNLQVP--------------KPFNPNHHLKPPLLPHHHHQRHPSSTT 83
           LP  +MDTLSSS+  L+VP               P +P  H  PP       Q H  STT
Sbjct: 6   LPLSSMDTLSSSVSTLKVPTLLSSTSSRELHQFNPQSPRTHKLPP-------QSHLHSTT 65

Query: 84  KTTATSSISTLPQKDNFTPIIPSYNPQRTPSPSKTSTLSSLKVTPPRAS-IHRRAASGYA 143
           K    S         N TP         + +PS  ++ ++L +    +S +HR+ A+GYA
Sbjct: 66  KPNLIS---------NKTPSFSHKLVSLSSTPSFLNSSATLSLNSSSSSDLHRKPATGYA 125

Query: 144 AALLNISQNNGTVLRVEKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERG 203
           AALL+I+Q N +V  VEKD++R L  +   +N +V   + + +V E+EKG+VV  + E+G
Sbjct: 126 AALLDIAQCNSSVHLVEKDIQRFLKLL---HNKQVQAALANPFVGEKEKGQVVNLVAEKG 185

Query: 204 KFEGHLVGLVKMLVNKGQSVELVKEVLEEFIRVFHQLIG 228
           +F  HLVGLVKMLV K + V +VKEVLEEF R++ +L G
Sbjct: 186 RFNRHLVGLVKMLVRKNK-VGIVKEVLEEFQRIYSELSG 204

[Close]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Match: W9RLH4_9ROSA (ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.200e-18
Identity = 81/202 (40.10%), Postives = 111/202 (54.95%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTT-KTTATSSISTLPQKDNFT 88
           MD LSSS+  L+VP               H    RH   T  KTT + ++       N T
Sbjct: 1   MDPLSSSVSTLKVPTL-------------HSTTSRHELLTHFKTTPSKNLPYSSLLPNKT 60

Query: 89  PIIPSYNPQRTPSPSKTSTLSSLKVTPP--RASIHRR-AASGYAAALLNISQNNGTVLRV 148
           P   + NP    S S TS   SL    P  R  IH R  A+GYAAALL+++Q N +V  V
Sbjct: 61  PTFTTQNPFTPSSFSSTSPTRSLTAPSPSPRPPIHHRNPATGYAAALLDVAQANNSVDSV 120

Query: 149 EKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNK 208
            +DV RLL  +    N +V   +   +V E+EKG+VV +L E+G+F  HLV LVKMLV+K
Sbjct: 121 GRDVERLLNLM---RNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDK 180

Query: 209 GQSVELVKEVLEEFIRVFHQLI 227
            + V ++++VLEEF RV+ Q++
Sbjct: 181 KKDVGIIRQVLEEFERVYDQML 186

[Close]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Match: B9I915_POPTR (ATP synthase delta chain-related family protein OS=Populus trichocarpa GN=POPTR_0014s09760g PE=4 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.000e-15
Identity = 76/208 (36.54%), Postives = 115/208 (55.29%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 88
           MDT+SSSI  L+ P   +    L+    PH  HQ  P+ TTK T++ S  T P K     
Sbjct: 41  MDTISSSISTLKGPAFLSTLPELQHLRTPHVSHQLPPNLTTKPTSSISNRT-PSKTKTL- 100

Query: 89  IIPSYNPQRTPSPSKTSTLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVLRVEKDV 148
              S+     P  S  S  SS   +P     HR   SGYAAAL++I++   ++  V+ DV
Sbjct: 101 ---SFKNLNLPLFSNISQSSSHNSSPHS---HRNPVSGYAAALVDIARCKSSLDIVQNDV 160

Query: 149 RRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLVNKGQSV 208
           ++LL  +    N ++   +   ++ ++EKG+VV E+ +RGKF  +LVGLVKML+++ + V
Sbjct: 161 QKLLKLL---QNEQIQAVLGSPFLGDKEKGQVVKEVAKRGKFNRYLVGLVKMLIDRNK-V 220

Query: 209 ELVKEVLEEFIRVFHQLIGGSVAHAPTP 237
            +V +VL EF R+  +L G  V   P+P
Sbjct: 221 MIVSDVLMEFERICDELSGTRVVLVPSP 236

[Close]

BLAST of Spo01224.1 vs. TAIR (Arabidopsis)
Match: AT4G00895.1 (ATPase, F1 complex, OSCP/delta subunit protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.900e-16
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = 1


		  
Query: 29  MDTLSSSIPNLQVPKPFNPNHHLKPPLLPHHHHQRHPSSTTKTTATSSISTLPQKDNFTP 88
           MDTLS+S+ +L +P    P     PP  P         ST   T ++S + L +  + +P
Sbjct: 1   MDTLSASVSSLNLPS-LPP-----PPQPPLRSISSRFKSTVNATTSASSTNLSKPTSSSP 60

Query: 89  IIPSYNPQRTPSPSKT------STLSSLKVTPPRASIHRRAASGYAAALLNISQNNGTVL 148
              SY+  R P+  K        T  S  VTPP   +H +AASG+AAAL+++ Q+   + 
Sbjct: 61  SSASYSQNRNPNFLKAISFHLPQTKPSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLG 120

Query: 149 RVEKDVRRLLMAVFRNNNGKVSEFMRDEWVEEREKGEVVIELLERGKFEGHLVGLVKMLV 208
           R ++DVRRL+            EF+  E  E++    +V +++ERGKF  H  GLVKML+
Sbjct: 121 RTQEDVRRLM------------EFLVGE--EKKRNKVLVNDVVERGKFGKHFKGLVKMLI 180

Query: 209 NKGQSVELVKEVLEEFIRVFHQLI 227
            +G+S  LV +VL EF R+ ++L+
Sbjct: 181 ARGKSGILV-DVLMEFERICNELV 183

The following BLAST results are available for this feature:

BLAST of Spo01224.1 vs. NCBI nr
BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
BLAST of Spo01224.1 vs. ExPASy Swiss-Prot
BLAST of Spo01224.1 vs. TAIR (Arabidopsis)

BLAST of Spo01224.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902167460\|gb\|KNA07379.1\|	3.5e-113	100.	hypothetical protein SOVF_1723...	[more]
gi\|731311190\|ref\|XP_010693701.1\|	3.4e-68	69.7	PREDICTED: uncharacterized pro...	[more]
gi\|596038782\|ref\|XP_007219859.1\|	2.6e-20	39.2	hypothetical protein PRUPE_ppa...	[more]
gi\|645254555\|ref\|XP_008233093.1\|	5.0e-19	39.2	PREDICTED: ATP synthase delta ...	[more]
gi\|703114577\|ref\|XP_010100695.1\|	3.2e-18	40.1	ATP synthase delta chain [Moru...	[more]

BLAST of Spo01224.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QJF1_SPIOL	2.4e-113	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FX50_BETVU	2.4e-68	69.7	Uncharacterized protein OS=Bet...	[more]
M5XHV8_PRUPE	1.8e-20	39.2	Uncharacterized protein (Fragm...	[more]
W9RLH4_9ROSA	2.2e-18	40.1	ATP synthase delta chain OS=Mo...	[more]
B9I915_POPTR	3.0e-15	36.5	ATP synthase delta chain-relat...	[more]

BLAST of Spo01224.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo01224.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G00895.1	1.9e-16	35.2	ATPase, F1 complex, OSCP/delta...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 100..230 score: 1.9
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 124..223 score: 4.
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	GENE3D	1.10.520.20		coord: 124..222 score: 1.
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	unknown	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 123..222 score: 1.4
None	No IPR available	PANTHER	PTHR11910:SF8	SUBFAMILY NOT NAMED	coord: 100..230 score: 1.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000123	histone acetyltransferase complex
cellular_component	GO:0005778	peroxisomal membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16436	0.80	Barchart \| Table
Spo24771	0.78	Barchart \| Table
Spo09460	0.78	Barchart \| Table
Spo11629	0.75	Barchart \| Table
Spo01715	0.72	Barchart \| Table
Spo11336	0.71	Barchart \| Table
Spo24867	0.71	Barchart \| Table
Spo24797	0.71	Barchart \| Table
Spo03847	0.71	Barchart \| Table
Spo10146	0.71	Barchart \| Table
Spo00538	0.70	Barchart \| Table
Spo00754	0.70	Barchart \| Table
Spo16392	0.70	Barchart \| Table
Spo01066	0.69	Barchart \| Table
Spo15244	0.69	Barchart \| Table
Spo23152	0.69	Barchart \| Table
Spo07922	0.68	Barchart \| Table
Spo04970	0.68	Barchart \| Table
Spo04153	0.68	Barchart \| Table
Spo04387	0.67	Barchart \| Table
Spo17047	0.67	Barchart \| Table
Spo06714	0.67	Barchart \| Table
Spo24493	0.67	Barchart \| Table
Spo02159	0.67	Barchart \| Table
Spo09445	0.67	Barchart \| Table
Spo25655	0.66	Barchart \| Table
Spo04789	0.66	Barchart \| Table
Spo09321	0.66	Barchart \| Table
Spo25304	0.66	Barchart \| Table
Spo18143	0.65	Barchart \| Table
Spo15619	0.65	Barchart \| Table
Spo01500	0.65	Barchart \| Table