Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTATTTTTTTTTTTATTTTTATTTTTATTTTTTGGTCCTATATTCGAGAATCCTCGACGATACCTTCTCTTCCCCTCCAAATTCAAAAATTTTGTTTCACATTTCTCTCCCTCTCACAGGTATCTAATCTACTTCGTCTTCGATTTTATTAATCTCCGTATTTTTTGTTCATTCAATTCTGAACTAATTTTGTGTAAATTTAGGGTTAGGGTTTAATTTATTTCCCCCAATTAAGTTTGCAGAAACTGCGAAATTAAGAAGTGGAGAATTTTTAATAAAAATGCAGCAGCCAACTCCTTCAATGATGTCTGTTATGCCTGCGTTTCCTCCAGCTAATATCACTACTGAGCAGATTCAAAAGGTTCTTTTCCCTCTCTTTTTTCTAGAAAGTTCTGTGTTTATTTTCTAAAAATAAGATTATGATCTGCGATTAATTCATTTAGTATTTGCTTATTTTGATTTAGGAGTAATTAAATTATTGATTACTTTGATGGGTTTCCATTTTTTGATTTTTAAAAATCCGTTCGAATAATAGTGGCAAGATTATGGCATTTTAGTGCAAGTTGAATAACTTCTCGAAATGCTCTAGATCAATTTTGGTGGTACTTTCAAATTTGGTTATTGTGAATTTGTGACTGGGTGTTTAGATATTACTATTCTTGGTGCCCCTAATTGTAGTATTGATGTTGGGCTTAATAATTGTTGTCCTGGCGGTTATGCTAGTGAACCTTGAATATGGTGTTTAGATGTTATGTAGTGAATGTTAATGGTTTCTGTGATTTGATGACTACAGTGATAGGGAGTACAGTATTGCTACCTTCCTGTACTTCACAAGTGTCAGCTTCTGTGGGTAGCTCACAATTGTCGACAATCAAGTGATCAACTTGTTATATTTGGTCTTAACATGCCAATTATTGCCAAATCATTGATATGACCTTCTAACTATAGGATGTTAGGCACATTACTCTAGGATTTTCTAAATTGCAATAAACCGACCATGGTTGTGGCTTTTGGGTCAGAGAATGTGAGTGTCGATGGTAAATACGGCAATCAGCGGTCTTCACTTGCTCATACTAAAGCTGGCCGACATTATCCACTAGAAAAGGAGTGGGTTTTCGGTGTTATGGCTACCTGAAAGACTTAGGACAGGAATTGGAAAAAGGATAAGGAGCTTTAGGCAATCATAGTTTCATTGACTTTTGGCTGGACACAATGAGTGATGGCTGGTTGGCTGACTGTTTTTCCAGGGGAGGTCCAAGCTGAAGGACGAGCGATGGCTGGTTGGAACCATTGTTATATGGGAGTTAGAAAATGAAGGGATCATCACTCAGTAAACATACATGTTCGCTGATGCAGGAAGTATGAGGCTTTACCTGAATAGGGGTTTGGTGGTTGGTACTATAGGAGAATATGTGTTCGGTAGCGGGAGGACAGAGTATAGTACCGAATGATAAATCTATTGAGATATTAGAAAATCCAGTTAGCAACTTCACTAGCATTTCTGAATTCTGAGTTTATAGTATAGGACCGAATGATAAACCTATTGGAGAACAGAGATATGTCTATCGCTCTAGAATTTTATGGAAATGTTGCATTAAATGTGTGTGCCCCCATGTCCAAATCATCTCAACCTTTGTATTGAATACAGAGCAAAATATCCCAAGAACACGAAGGGTTTGTGACATGCAAAAGTTCAGCAAAACTAAGATGCTAATTTTATAATTATTTTGTACCATAGTTACACACCATTAAGTTTATAAGAAGGTGCATAATTATTGAAATATGTGAATGAATACAAGTCAAAGACTTCTTGGTTTAGTGTTTTAAAAGATTGCGAGGTTGAAATTTGTGCTTTTTACGTGTGTTTCAAGTCTTGCAAACGGTAATCGAATCTGGCTCGCAATCTTTGGGGCTAGCCAATCCCTTACAATGTTTTAGGATATAATTAATATCTTTGCTTTTGTTTGGAAATGTTTTCTGCTCTACTTAAATGGTCTGCGATTCTACGACGTGCTTAGAAGATGTGATCGATGTGCCTTCACATTTCTTGTGTGGTTAGAATTATCTAGTCAAGGGGTTTATTATTTTCGCATATATTCTTGCAGGGAATCATGATTTACTTCTGCTTTAGGTTTTCCTGCTTTTCCAGGTTTCTTATGTTTTAGATCTATTTAGAGGAACAGGACATTATCTTTTATAAAACATTACTTAAGTATGTGTTAATGTAGGTCAAGCTCCAGCTCCTATCTACCCATTGATGTGCCTTGTCATCCGACTCTAGTTAAATCAGCACTCGGGCTTTACTACAGTTTCTTTTTTGAATTTTAGCTGAGCTTTTACACTGCATAGCCATTACATGACCAAAATCAATATGAGTACTCTTTGTGTCAGTTCTGAACTTCTGATTATGAGTGCATGCTATATCAGTCAACTGAGTGTCTAATTGTATAAGTTGACAGCTTCAGGAATAGGCCAATTTTCAGGGAAAATCACCTTCTCAATTGCACTTGGTTTTCTTCCTTCCACGCGGCTTTCTATATGAAGTTTGTGGACCCTTCTTACCTTTGTCACACATAGTTCCTTGTACGCACAGCTTCTCTTCTAGTTAGAGGAACCTGGATTGTCAAACTAAATTAAATATTTTCTTGTATTGTATTTTAGCTTTTTGTGTTCATTTTGATATAGGCAATGCTAATGAATCCTTCGTTCAGAATCTAGAAGCTCTTCTTACTTGATGATTCTTTGCGCTGCATTTACATTGTGTTCTATTTCTATTGGACTGAAATTTACCACTTGGATTCAGTTTTTCCACTTATGTTTTGTGCTGTATCATTGGACAGTTGTGCTTGATTTATATCATGAATAAAAGTAGTGTATGCTCTGTAAACTCAGCCTTCAACGAATAAAAGCAGATCTATACCCATGTCGGAATTCTGTCAACTATTACCTGGGAAAACTATGTTGTGTATGTTTAAATTGTTTATCATCATGGAACTTTGTAATGATTGTTGTGCATTAGGCTTCTTTTCTCCTTTCATGCGCCTGACATGGATTCCGTCTGTTTGTCAAGTACTTCCAACATCTGGAGCACAAAAAGTACAAGTATAAAAATTCTACTCCGTTATCACCTTTCTTCTCTTTCAGACTACAGCTACCCTTCTCCCCCCTCAATAATTTTTTTTTTTTTGGGAAAAAGGAGGTTCTTCCATGATCAGCCTGATTGAATGGAACAGTTCACATGTCCGCTTTGGATCATCACGACCTGTCATAATCTTGAAATTCATTTTGTATGTTTGACCTTGACGGATTGACAGTTATGTAACCTTATCTGGGTTTTGTGTATGATCGGGCTGCTTCACTACATGGCAGCATAGAGAAATTAGACTGACTCTACTGGTGACTGTTTAAGATTTTATTTATTTGGGTATAAGTATCATTTGCAATCTCCCGTGTAATATGGGACATTTTATACAAGTCACGTGCATTTTTCTTTCCCGAGTTCTGATCTTATGTTTATATTCTATTGCAGTATCTTGATGAGAACAAAAAGTTGATCCTGGCTATATTGGATAATCAAAACCTTGGGAAGCTAGCTGAGTGTGCTCAGTAAGTTGCTGCTTAAGTTTTGTGCTGCCTGCTGTTCTATCTGTTTCTTTCCTGCTATTCTGGTGAAACCATTTGACAGTTTTTTTATTAGTTGGATTTGGATCTGTTTGAACAGCTTTTGCTTTTCAGAAACATATGAACTGGTAATTACGCACCTTACATCCATGTGGTTGCTTCTCTACATTTACCTTTTCTCAATCCTTGTCAATAATGGTTCCTTCCTGCATGCTGTTAACAGTTTGGCCCCTTTCTCCCCNCCCCCCCCCCTCCCCCTTTCCTTCTGAATCACTCTCCGTTATATGGGTAATAACTCCAGGGTAATGAGCCCTAGTACCAGGGGCATTATAACAATAAGCCATCAAAAAGACATAAAGTGGTTTCTTTGAGTTCAGAGATACTAGCCAACCGTTCATACAAAAATTATATAATCAGCTATCAAGCTATTGTTGCTCTTTTGAGCGGGTAGCTCATGGAAAAAAAAGTGAAAAGGTAAAATATATAAAATTATATATTAAATAAAAAATTATAGGGAGGTACAAGGTATTGTAACATATCTATGGAAAACTTTGTAGTTTAAAAGCATTGTAGCTAGAAATTTGATGTGGCAAATTATGCTACACCACCTTGTAGCTAACCAATGGAGTTGCTCTAAGTAGTCTGCATAACTGCATAAGGCCATGCCCAGATGCTTGCTTTATATTAGCATGTGATGGCATAAGCATAAGGCCCAAAGAAGTTAACATATACCTCGGGGGCCTAAAGCGATTCATACTTCAGCAGATTGTTACTAGGAATGATTGCCACTATCTCGTAACTTCTTCAGTCTTAGGCAATGCTGTTTTTACCTATCCAACTAATCTTTTATTTGTTCTGCAGATATCAAGCACAGCTTCAGAAAAACTTGATGTATCTGGCTGCAATAGCTGATGCTCAGCCTCAGGTGGCTGCAGTACCTGCCCAAGTATGCTTGCTTACATCATCACTTTACTGACCATATGCCAATGCTGTAATCTTTGTGCTTATGCATAGAACGTTACCTGCAGGTGGCCCCACATCCTGCTATGCAACAAGGAGCATACTACATGCAGCAGCAAGCGGCTGCTGCAATGGCTCAACAGCAAGGTGTTTTCCCTCCTAGGATGCCCGCACAGTTCACAAATCCACTTCATGAGCAACAACTTCAGCAACAACATCAGCAACAACCTCATGTACACCACCAGCAGCAGGCCAACCCTGGGCAAATGAACTTTAGACCCGCGGGACCTAGTGATGGGATACATCCCATGCAACCTGAAGCGATGCATGGGGGTGGTAACGGTGGTGGGCCACCTGTGTCAAGTGACACACGTGGTGGAAACAAGCAAGATGGCCCTGAGGTAGGGTCCACAGGGGACGGACAAGGAAATCTGGGTGGGGGTGCCGGACGCGATAGTGAAGGGGAACCATGACAATGCCTTAACAACTTTTAGGCATATGAATGTTGATAAGTAGGGATATGTGTGTCTCCACACAAGAAGACGATGGTCGATGGCGGTGGTCTAGCCTCATCTTTGGTAAGCTTGAAATAGGAAGTGTAATTTTCTTGTTTGTTTGTTTGTTAATTTAGCCAAAGTTAGTGAAAGATGTAGTGTTTCTGTTATGGTTGTTAATTTGTTATGTCCTATAACATGTTGGCAAAAATTAAAGTCCAGCATTACCAAATCATGCCAAGTATGATTCTAGACCACCTTTATCTATGGAATAGATTGATGTTTGATCTTCCTTAGGGTTGTGCCGCGGGTGTGGATTTGCAGCTGTGCCAGAAAAGTCATCTTGAAGTAAACTGCCTTCTCTCCCTCTCTTTTAC TTTTATTTTTTTTTTTATTTTTATTTTTATTTTTTGGTCCTATATTCGAGAATCCTCGACGATACCTTCTCTTCCCCTCCAAATTCAAAAATTTTGTTTCACATTTCTCTCCCTCTCACAGTTTGCAGAAACTGCGAAATTAAGAAGTGGAGAATTTTTAATAAAAATGCAGCAGCCAACTCCTTCAATGATGTCTGTTATGCCTGCGTTTCCTCCAGCTAATATCACTACTGAGCAGATTCAAAAGTATCTTGATGAGAACAAAAAGTTGATCCTGGCTATATTGGATAATCAAAACCTTGGGAAGCTAGCTGAGTGTGCTCAATATCAAGCACAGCTTCAGAAAAACTTGATGTATCTGGCTGCAATAGCTGATGCTCAGCCTCAGGTGGCTGCAGTACCTGCCCAAGTGGCCCCACATCCTGCTATGCAACAAGGAGCATACTACATGCAGCAGCAAGCGGCTGCTGCAATGGCTCAACAGCAAGGTGTTTTCCCTCCTAGGATGCCCGCACAGTTCACAAATCCACTTCATGAGCAACAACTTCAGCAACAACATCAGCAACAACCTCATGTACACCACCAGCAGCAGGCCAACCCTGGGCAAATGAACTTTAGACCCGCGGGACCTAGTGATGGGATACATCCCATGCAACCTGAAGCGATGCATGGGGGTGGTAACGGTGGTGGGCCACCTGTGTCAAGTGACACACGTGGTGGAAACAAGCAAGATGGCCCTGAGGTAGGGTCCACAGGGGACGGACAAGGAAATCTGGGTGGGGGTGCCGGACGCGATAGTGAAGGGGAACCATGACAATGCCTTAACAACTTTTAGGCATATGAATGTTGATAAGTAGGGATATGTGTGTCTCCACACAAGAAGACGATGGTCGATGGCGGTGGTCTAGCCTCATCTTTGGGTTGTGCCGCGGGTGTGGATTTGCAGCTGTGCCAGAAAAGTCATCTTGAAGTAAACTGCCTTCTCTCCCTCTCTTTTAC ATGCAGCAGCCAACTCCTTCAATGATGTCTGTTATGCCTGCGTTTCCTCCAGCTAATATCACTACTGAGCAGATTCAAAAGTATCTTGATGAGAACAAAAAGTTGATCCTGGCTATATTGGATAATCAAAACCTTGGGAAGCTAGCTGAGTGTGCTCAATATCAAGCACAGCTTCAGAAAAACTTGATGTATCTGGCTGCAATAGCTGATGCTCAGCCTCAGGTGGCTGCAGTACCTGCCCAAGTGGCCCCACATCCTGCTATGCAACAAGGAGCATACTACATGCAGCAGCAAGCGGCTGCTGCAATGGCTCAACAGCAAGGTGTTTTCCCTCCTAGGATGCCCGCACAGTTCACAAATCCACTTCATGAGCAACAACTTCAGCAACAACATCAGCAACAACCTCATGTACACCACCAGCAGCAGGCCAACCCTGGGCAAATGAACTTTAGACCCGCGGGACCTAGTGATGGGATACATCCCATGCAACCTGAAGCGATGCATGGGGGTGGTAACGGTGGTGGGCCACCTGTGTCAAGTGACACACGTGGTGGAAACAAGCAAGATGGCCCTGAGGTAGGGTCCACAGGGGACGGACAAGGAAATCTGGGTGGGGGTGCCGGACGCGATAGTGAAGGGGAACCATGA MQQPTPSMMSVMPAFPPANITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQVAAVPAQVAPHPAMQQGAYYMQQQAAAAMAQQQGVFPPRMPAQFTNPLHEQQLQQQHQQQPHVHHQQQANPGQMNFRPAGPSDGIHPMQPEAMHGGGNGGGPPVSSDTRGGNKQDGPEVGSTGDGQGNLGGGAGRDSEGEP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01234.1 vs. NCBI nr
Match: gi|902180981|gb|KNA09652.1| (hypothetical protein SOVF_151620 [Spinacia oleracea]) HSP 1 Score: 406.8 bits (1044), Expect = 2.400e-110 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Spo01234.1 vs. NCBI nr
Match: gi|731311140|ref|XP_010691470.1| (PREDICTED: GRF1-interacting factor 2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 319.3 bits (817), Expect = 5.100e-84 Identity = 184/220 (83.64%), Postives = 191/220 (86.82%), Query Frame = 1
BLAST of Spo01234.1 vs. NCBI nr
Match: gi|731311142|ref|XP_010691545.1| (PREDICTED: GRF1-interacting factor 2 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 271.9 bits (694), Expect = 9.300e-70 Identity = 159/193 (82.38%), Postives = 165/193 (85.49%), Query Frame = 1
BLAST of Spo01234.1 vs. NCBI nr
Match: gi|225453588|ref|XP_002263524.1| (PREDICTED: GRF1-interacting factor 3 [Vitis vinifera]) HSP 1 Score: 239.6 bits (610), Expect = 5.100e-60 Identity = 148/215 (68.84%), Postives = 161/215 (74.88%), Query Frame = 1
BLAST of Spo01234.1 vs. NCBI nr
Match: gi|567904546|ref|XP_006444761.1| (hypothetical protein CICLE_v10022233mg [Citrus clementina]) HSP 1 Score: 234.2 bits (596), Expect = 2.200e-58 Identity = 143/216 (66.20%), Postives = 157/216 (72.69%), Query Frame = 1
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQW5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_151620 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 1.700e-110 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D779_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002380 PE=4 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 3.500e-84 Identity = 184/220 (83.64%), Postives = 191/220 (86.82%), Query Frame = 1
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Match: F6I2X0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02770 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 3.600e-60 Identity = 148/215 (68.84%), Postives = 161/215 (74.88%), Query Frame = 1
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Match: V4TWR5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022233mg PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.500e-58 Identity = 143/216 (66.20%), Postives = 157/216 (72.69%), Query Frame = 1
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Match: A0A067HFB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028287mg PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.500e-58 Identity = 143/216 (66.20%), Postives = 157/216 (72.69%), Query Frame = 1
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Match: GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 7.000e-33 Identity = 120/231 (51.95%), Postives = 139/231 (60.17%), Query Frame = 1
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Match: GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana GN=GIF2 PE=1 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 4.500e-32 Identity = 114/216 (52.78%), Postives = 129/216 (59.72%), Query Frame = 1
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Match: GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.700e-18 Identity = 89/218 (40.83%), Postives = 125/218 (57.34%), Query Frame = 1
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Match: S18L2_HUMAN (SS18-like protein 2 OS=Homo sapiens GN=SS18L2 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.900e-7 Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Match: S18L2_MOUSE (SS18-like protein 2 OS=Mus musculus GN=Ss18l2 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 8.600e-7 Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1
BLAST of Spo01234.1 vs. TAIR (Arabidopsis)
Match: AT4G00850.1 (GRF1-interacting factor 3) HSP 1 Score: 142.1 bits (357), Expect = 3.900e-34 Identity = 120/231 (51.95%), Postives = 139/231 (60.17%), Query Frame = 1
BLAST of Spo01234.1 vs. TAIR (Arabidopsis)
Match: AT1G01160.2 (GRF1-interacting factor 2) HSP 1 Score: 119.8 bits (299), Expect = 2.100e-27 Identity = 113/250 (45.20%), Postives = 128/250 (51.20%), Query Frame = 1
BLAST of Spo01234.1 vs. TAIR (Arabidopsis)
Match: AT5G28640.1 (SSXT family protein) HSP 1 Score: 94.4 bits (233), Expect = 9.400e-20 Identity = 89/218 (40.83%), Postives = 125/218 (57.34%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01234.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01234.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01234.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01234.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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