Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACATGTGGACTGAATTAAAAATTTACTCCCAAAAAATGAGTAAATGACACATTGTTGCAATTTGCAAAACCCACAAATCCTAAAACCCTCCTTCAACCTCCCAAGATTTTGACACTTTCCCCCTTCCATGGCTTCCCTATTCAGAATTTCCCGAAAATGTCGTCTTCCTTCTTCATTTTCTCTCTCCGGAAACCTCACACATCGGAAATGGTTACCTCTTCTCCGACCACTTCGATGCTTCCAAGAATCCCCGACCCAATTTCGTGCTCACTCTTCTGAAACGACAAAGGTCCGATCACCGTTCGATTCCAATATTATACGAATTCTTCGCACCGAGGTCGAATATCAGTCTGAATATGCTCCGCCTGAAGAGGTATTCTGAAGTAGTTTTTGAATTTGTCCCATTTTTTCTGTAATTTATATTTCTGCGTTGAGTTTGAAGTTTGAACATTGGAGCATAACATTGGAATGGATTGAATTAGATGATTTTATTTTTATTTTTTTGATTGAAAAGTTTACAAATTAAACGAGCGAATTTGATGCTGTGAATGTAGTTTAAATTGTAATGTTAGGAGATTTAGGGATTAATAGAAATTGGGTTTGCTGGGAACCGGTGGTTCTGGAAATTGATTGCAAGACAACGTACTTTTTTGGTTTAAAATCCGTGTTTCCTTGACAATGTAGCTGATCAAAGAGACCTGAGAACTATGGAGTGGAGGGAGTGCATTTGTTTTCGAGAATCTAACATCGGTTCGAAATTCAAAGTCAAACTAGAGTGGTAGGAAGTAGGAGATTATTGATACAGTAGAAAACGGAAGGAAATCGGCTCCGTGAATTCAAGGAATGCCCTCTCTTTAATGCTGTTGTAGGCATTCATGAGTGTGGTGATTGAATGAGGTGGGATGAGTGTACTACATATACCGATGATAAAGCTTAGGTTGGTCTTGTTGTTATGAGACATGGAAATATAAGTTGTTATTGCCATAACATAGGGAATTTATCGGCAAGGTATGCAGTATTGTGTTTTTTTCATGTGGTAAAAATAGATGCTCAAAAGTTTTACTTTCCTGCAGTCATGTGGAGGAAGAGGAAAAACATTAAGCTGCTAACCATGATTCGTTTAAGTGATCAAGATATATGGTAACGTAGTAGCTTATCAGCCAGAGTTAATTGTATTATTTGTTTCATGTCCTTAACCTTTTAATCTTCTGGACTAAAGTTTTTTTTTTTTGGCAATTATTCTGGACTAAAGTTTAGTGCATCTTAGGTGAATTCCAGATGATGTTTCTAACTAGAGGATCTTTTTTCCTGTCAGACATGTTGGTGGTATCTCCCCTTGTTTCCATAGACTTTGACATGGTAATAGTTGGTGACTTGGTTAGATGGAGTAGTTGTGTAACTTGTGTTAGCACATGGACTTTAGTAAAGTGATTGCTAGTGTGATGTGTTTTAAATGTGTTATTGGTTACAACTAAAGCAAGAATGAATGCTAAGTTGGAGCTCTGGAGACAAGAGTTAGAATGTTTCAGTAGGATTGTTCGGGGATAGATGTGAATATTAGCGTGTGTTTTGTTTTTTCAGTTATGCTCTTGGCTGCAATCAAAATAGGATTCGAAGCTGAGTTGGAGCACTGGAGACAAGAGATAGAATCACGAGATTTTAGGTTAGGCAACAGTAAAATTAAGTTTTTGGGATTAATGTAGATGTAGAAACAACAAAGATAAAACCAAATTATTGTAAATTTGGATGGGAGAGAATTATTTCTACAAGGACAACCTTATTTTTACACATCAGAATACTGGTCCTTTGGGAATTAGGATAGATCAAATAAAGAAGGTGAGTGGAGCTAAGATGCAGATGTTAAAATGAATGTGAGCTAAGTCAGCTTACTCAGCTAACACAAGGAAACATAGAGTTCACAATGATAAAATTCACATAAAAGTTGGAGTTTTGGCCATTGACCGATAAGAAAAGAAAGTTAATCACATTACAATGGTAGTTGTCGTGGTGGCTACTTTGGTACGGCGATTGGAGATTTGGAAATTGGAATACTGTTGACCTAAAAAGAAGGTAAGAGACACCACTGATGACATGAATTGAGGTGTTAAGAAGGATATAAATCTTTAAGGCTCCTAGAATACAAGATGCTTAGTAGAAAGGAATGAAGGAGATGGATTCTCGTAGATGATTCCATTCATATAGCCGACCCATTGTTTAGGATAAGGCTATATGTTTTTATTTTTTTTATTTTTTTGTATCAGAGTTTTTAGAAAGAAGAGGGATGATCTTATAAATATGATAGCACTGCAATATTTTCTATGAAATTTGTAGACTTCATGTTGTGATTTTTAGTTTGCGCTTATTGTGATCCTTGATTAAAGTGAATTTGTTTAAAAACTTGACTGATGATAGCAAATTTGACAACGACATATTAAGACTTGGGAAAATAAGGCGGCTACAAAAAATATGGAGATTAATGTTAAATTGTTGACGGTTTTTATCGGGATATCTTTTACATATTATTTGGGTTGTATGTTTAAACTAAAAAATTAAATCCTGATTCCTGAACCAGTTTATGAAATAGCATTTCACCCATAAGTTGGAAATCCTGGGGAACATTAGTCCTTAAAGCCTTTCCTTTTCCCTTACATATCACAACAGTGCACTCATTTTCTTTCCATTGTTACAGTTGTTGAAAGTAGTTGGCTGGTGTTCAGCCTTTTAATCTTATGTAACCTTTTTTTATCCGAATATGCAGCCTCTCGCAAGTTTCAATATATTTTCAGTTGAACACCGCCCAGGTGAGCAATTTGTAAGGCTCCGATGCAAGTTTGGTGAAAAAGAAGATATCAAAATTGAGGCTACTATGTTTGATGGTTGTGTATCCGACCCAAAACCCGGGGACGATGCTGATGGCGAAGATATTCGTCTTCACATAAGCTTACTGGTTGACATATACAAGGGAGAGAGATCTGATGGATTAGGATTTGTGTGCTCCGCATGGCCAGATGGCTTGGAGATCATGAAAGTCTACATGCTTCGTGGCAACAAATTTCTGCCTAAAGCTCATATGGGGCCTAATATAAGGTACTGCCTCCTTGTTAGCCATAATAGCTCCATGTGTTTGGCATGATGGTGTTTGGTTTTGTAATTATGATTGTTACTATGATCTTGAGCATCTTTTGTGACATTTGCCTATTTTCTTATCATTTTCAAAGTAGTGGAAATGTGGACTAGCAGTAAACAGTAATCTTCACTAAAGATTGCGAAGGATTATTTATTTTCATAACTGTATACAGAACATCAGAGATCAGGGGAAAAAATATGAAGTATGTTAATTAGCTGTGTACTTAGATTGGGGTGTGTTAATCTAGTGCACATCTGGCTGGTAATTGGTGTCTTTTTCTTCTGATCACCCATTACATTTTACTCAATAAGCTCCTGTTTGAGGCTTGAAATCATGGTTAATTTTCCATGCTGTTTGTTTCGAAATTTTGATTGTGTCATACCAGTAAACTGTAAACGTGCCCCCCATGAATGTTATTGCATTGTGCCTGTGTTATCCACTGTTTTAGCTTGTGATTGACACTATTACATTCCATTACCTCAGAAACTTGGACCCCAAGCTCCGTAAGGCACTTCATCAATACTTGGAAGCAAGAGGGGTGAATGATGAACTTTCTGTTTTCTTGCATCAGTACATGTTCAACAAGGATAGAACTGAACTCCTGAGATGGTTAGAAACGGTGAAGTCTTTTGTCGAACTGTAGAGTGCCTTTCTGGCTTCCCCTGGAAGATCAATTGTATGGTAATGACATTGATACTGTTTAGACTTTAGGGGGTATAAAATGTTCCTTAACATAAATGATTTGTTCATAATATACAAAGTATTCCTCAAATTCTTCTTTTCATATTACTTGCTTGCTGAATATTGACGAAATTGACAATTTTTGAGGTTTAATACTTAACTGGTTTGATGACATGGGCAAGGACTGTTGTGCCGAAATCTAAGTCAGATTCTTACTCCTCATTTTGACAAGTTGTTTGGACAGGATTGTGTTAGGTAGTCATTGACTCATTGTGTTAGATTGAGGCTTATTTAGAGTGCTCTTTTATTGGTTTGGCTCGTGG AAACATGTGGACTGAATTAAAAATTTACTCCCAAAAAATGAGTAAATGACACATTGTTGCAATTTGCAAAACCCACAAATCCTAAAACCCTCCTTCAACCTCCCAAGATTTTGACACTTTCCCCCTTCCATGGCTTCCCTATTCAGAATTTCCCGAAAATGTCGTCTTCCTTCTTCATTTTCTCTCTCCGGAAACCTCACACATCGGAAATGGTTACCTCTTCTCCGACCACTTCGATGCTTCCAAGAATCCCCGACCCAATTTCGTGCTCACTCTTCTGAAACGACAAAGGTCCGATCACCGTTCGATTCCAATATTATACGAATTCTTCGCACCGAGGTCGAATATCAGTCTGAATATGCTCCGCCTGAAGAGCCTCTCGCAAGTTTCAATATATTTTCAGTTGAACACCGCCCAGGTGAGCAATTTGTAAGGCTCCGATGCAAGTTTGGTGAAAAAGAAGATATCAAAATTGAGGCTACTATGTTTGATGGTTGTGTATCCGACCCAAAACCCGGGGACGATGCTGATGGCGAAGATATTCGTCTTCACATAAGCTTACTGGTTGACATATACAAGGGAGAGAGATCTGATGGATTAGGATTTGTGTGCTCCGCATGGCCAGATGGCTTGGAGATCATGAAAGTCTACATGCTTCGTGGCAACAAATTTCTGCCTAAAGCTCATATGGGGCCTAATATAAGAAACTTGGACCCCAAGCTCCGTAAGGCACTTCATCAATACTTGGAAGCAAGAGGGGTGAATGATGAACTTTCTGTTTTCTTGCATCAGTACATGTTCAACAAGGATAGAACTGAACTCCTGAGATGGTTAGAAACGGTGAAGTCTTTTGTCGAACTGTAGAGTGCCTTTCTGGCTTCCCCTGGAAGATCAATTGTATGGTAATGACATTGATACTGTTTAGACTTTAGGGGGTATAAAATGTTCCTTAACATAAATGATTTGTTCATAATATACAAAGTATTCCTCAAATTCTTCTTTTCATATTACTTGCTTGCTGAATATTGACGAAATTGACAATTTTTGAGGTTTAATACTTAACTGGTTTGATGACATGGGCAAGGACTGTTGTGCCGAAATCTAAGTCAGATTCTTACTCCTCATTTTGACAAGTTGTTTGGACAGGATTGTGTTAGGTAGTCATTGACTCATTGTGTTAGATTGAGGCTTATTTAGAGTGCTCTTTTATTGGTTTGGCTCGTGG ATGGCTTCCCTATTCAGAATTTCCCGAAAATGTCGTCTTCCTTCTTCATTTTCTCTCTCCGGAAACCTCACACATCGGAAATGGTTACCTCTTCTCCGACCACTTCGATGCTTCCAAGAATCCCCGACCCAATTTCGTGCTCACTCTTCTGAAACGACAAAGGTCCGATCACCGTTCGATTCCAATATTATACGAATTCTTCGCACCGAGGTCGAATATCAGTCTGAATATGCTCCGCCTGAAGAGCCTCTCGCAAGTTTCAATATATTTTCAGTTGAACACCGCCCAGGTGAGCAATTTGTAAGGCTCCGATGCAAGTTTGGTGAAAAAGAAGATATCAAAATTGAGGCTACTATGTTTGATGGTTGTGTATCCGACCCAAAACCCGGGGACGATGCTGATGGCGAAGATATTCGTCTTCACATAAGCTTACTGGTTGACATATACAAGGGAGAGAGATCTGATGGATTAGGATTTGTGTGCTCCGCATGGCCAGATGGCTTGGAGATCATGAAAGTCTACATGCTTCGTGGCAACAAATTTCTGCCTAAAGCTCATATGGGGCCTAATATAAGAAACTTGGACCCCAAGCTCCGTAAGGCACTTCATCAATACTTGGAAGCAAGAGGGGTGAATGATGAACTTTCTGTTTTCTTGCATCAGTACATGTTCAACAAGGATAGAACTGAACTCCTGAGATGGTTAGAAACGGTGAAGTCTTTTGTCGAACTGTAG MASLFRISRKCRLPSSFSLSGNLTHRKWLPLLRPLRCFQESPTQFRAHSSETTKVRSPFDSNIIRILRTEVEYQSEYAPPEEPLASFNIFSVEHRPGEQFVRLRCKFGEKEDIKIEATMFDGCVSDPKPGDDADGEDIRLHISLLVDIYKGERSDGLGFVCSAWPDGLEIMKVYMLRGNKFLPKAHMGPNIRNLDPKLRKALHQYLEARGVNDELSVFLHQYMFNKDRTELLRWLETVKSFVEL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01241.1 vs. NCBI nr
Match: gi|902145780|gb|KNA05001.1| (hypothetical protein SOVF_194440 [Spinacia oleracea]) HSP 1 Score: 500.0 bits (1286), Expect = 2.400e-138 Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 1
BLAST of Spo01241.1 vs. NCBI nr
Match: gi|731316820|ref|XP_010665892.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 395.6 bits (1015), Expect = 6.300e-107 Identity = 200/244 (81.97%), Postives = 212/244 (86.89%), Query Frame = 1
BLAST of Spo01241.1 vs. NCBI nr
Match: gi|694312818|ref|XP_009363911.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Pyrus x bretschneideri]) HSP 1 Score: 253.1 bits (645), Expect = 5.100e-64 Identity = 117/210 (55.71%), Postives = 157/210 (74.76%), Query Frame = 1
BLAST of Spo01241.1 vs. NCBI nr
Match: gi|296082082|emb|CBI21087.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 252.3 bits (643), Expect = 8.700e-64 Identity = 131/249 (52.61%), Postives = 167/249 (67.07%), Query Frame = 1
BLAST of Spo01241.1 vs. NCBI nr
Match: gi|225430382|ref|XP_002285343.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera]) HSP 1 Score: 252.3 bits (643), Expect = 8.700e-64 Identity = 131/249 (52.61%), Postives = 167/249 (67.07%), Query Frame = 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194440 PE=4 SV=1) HSP 1 Score: 500.0 bits (1286), Expect = 1.700e-138 Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FTK3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031170 PE=4 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 4.400e-107 Identity = 200/244 (81.97%), Postives = 212/244 (86.89%), Query Frame = 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Match: I3SGA2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 6.000e-64 Identity = 124/243 (51.03%), Postives = 165/243 (67.90%), Query Frame = 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Match: D7SUY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05940 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 6.000e-64 Identity = 131/249 (52.61%), Postives = 167/249 (67.07%), Query Frame = 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Match: A0A072VE84_MEDTR (Glycoprotein family protein OS=Medicago truncatula GN=MTR_1g013120 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 7.900e-64 Identity = 117/197 (59.39%), Postives = 151/197 (76.65%), Query Frame = 1
BLAST of Spo01241.1 vs. ExPASy Swiss-Prot
Match: YB95_ARATH (Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 6.700e-16 Identity = 66/209 (31.58%), Postives = 100/209 (47.85%), Query Frame = 1
BLAST of Spo01241.1 vs. ExPASy Swiss-Prot
Match: Y2979_ARATH (Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis thaliana GN=At2g39790 PE=3 SV=2) HSP 1 Score: 66.2 bits (160), Expect = 5.500e-10 Identity = 56/200 (28.00%), Postives = 92/200 (46.00%), Query Frame = 1
BLAST of Spo01241.1 vs. ExPASy Swiss-Prot
Match: MAM33_SCHPO (Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.100e-9 Identity = 35/124 (28.23%), Postives = 61/124 (49.19%), Query Frame = 1
BLAST of Spo01241.1 vs. ExPASy Swiss-Prot
Match: MAM33_YEAST (Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 7.500e-7 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Match: AT4G31930.1 (Mitochondrial glycoprotein family protein) HSP 1 Score: 224.9 bits (572), Expect = 5.200e-59 Identity = 115/242 (47.52%), Postives = 156/242 (64.46%), Query Frame = 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Match: AT1G15870.1 (Mitochondrial glycoprotein family protein) HSP 1 Score: 196.4 bits (498), Expect = 2.000e-50 Identity = 103/251 (41.04%), Postives = 165/251 (65.74%), Query Frame = 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Match: AT1G80720.1 (Mitochondrial glycoprotein family protein) HSP 1 Score: 189.1 bits (479), Expect = 3.200e-48 Identity = 91/188 (48.40%), Postives = 132/188 (70.21%), Query Frame = 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Match: AT5G05990.1 (Mitochondrial glycoprotein family protein) HSP 1 Score: 100.5 bits (249), Expect = 1.500e-21 Identity = 71/215 (33.02%), Postives = 114/215 (53.02%), Query Frame = 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Match: AT5G02050.1 (Mitochondrial glycoprotein family protein) HSP 1 Score: 91.7 bits (226), Expect = 6.900e-19 Identity = 76/253 (30.04%), Postives = 126/253 (49.80%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01241.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo01241.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo01241.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4 Position : 0 Zoom : x 1
BLAST of Spo01241.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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