Spo01255 (gene)

Overview
NameSpo01255
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Locationchr4 : 74928116 .. 74928944 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCCACTCTTCAGTTTCTCTCCCAAACAACAACCCTTCATCTGCACCTCTTCCAACCAACTCAAGCTTTTCATACATTACCTTCATTTCCTCTAAAACATCGAAAACTCGACCTTATTTCAATAAAATGCACTACAAACTCCTCACCACTTGAACCAGTAGCAGACAGTTTTCCCACCCCAAGCCCAGAGAATGTAGCCACAACCCCTGCAGAGAACTTCCCCATTGACAAGAGAAGAGCATCCGAAATAATCAGGGACCGAAAGGCTCGAACCGAGCTCGTAAAACTGGAACCTCCCAACTTTGAGATAGGTTGGAAGAGGACTAAACCCATCAACCTAGAGAAGCCTACAGGGTATGTGATCATGGATTTTCTAGATAAGTTTGAAGGATTGATGAGTCGAGAATTCGGGTCGAAAGAGCTGCTGGTTAAGGCAGGAGAAATAGTAGCTGAAAGAGCAAGAGAAGAGGCAGAGGATTTAAGAGATGAAGGCAAAGTTGAAGATAGGATGGTCACTGAACTTTCCAGGGTTTTGAAGTTAATGGAAATGGATTTGGTAATGGTTAAAGCTGCTTATAAAGAAGAGACTCTAAATGAGAGGCTTGAACAAGCTAAGGCGAGGTGCAGGCAAGCTATTCTTGTTGCCAAATCTTTTTGATTATTTTTCCAAAAAAGTGACGCCAAATTCTGGGAATTGATAGTTCTAAACTATAGTTTCTTAGTTATGTATAATAGAGGAAATTCTGATCTTGCACCTAATTTCTGATTAAATCGCGCACAGTTTACTCATTGTTCAGAGTTTGACATCAGATATGCTTTAA

mRNA sequence

ATGGCTTCATCCACTCTTCAGTTTCTCTCCCAAACAACAACCCTTCATCTGCACCTCTTCCAACCAACTCAAGCTTTTCATACATTACCTTCATTTCCTCTAAAACATCGAAAACTCGACCTTATTTCAATAAAATGCACTACAAACTCCTCACCACTTGAACCAGTAGCAGACAGTTTTCCCACCCCAAGCCCAGAGAATGTAGCCACAACCCCTGCAGAGAACTTCCCCATTGACAAGAGAAGAGCATCCGAAATAATCAGGGACCGAAAGGCTCGAACCGAGCTCGTAAAACTGGAACCTCCCAACTTTGAGATAGGTTGGAAGAGGACTAAACCCATCAACCTAGAGAAGCCTACAGGGTATGTGATCATGGATTTTCTAGATAAGTTTGAAGGATTGATGAGTCGAGAATTCGGGTCGAAAGAGCTGCTGGTTAAGGCAGGAGAAATAGTAGCTGAAAGAGCAAGAGAAGAGGCAGAGGATTTAAGAGATGAAGGCAAAGTTGAAGATAGGATGGTCACTGAACTTTCCAGGGTTTTGAAGTTAATGGAAATGGATTTGGTAATGGTTAAAGCTGCTTATAAAGAAGAGACTCTAAATGAGAGGCTTGAACAAGCTAAGGCGAGGTGCAGTTTACTCATTGTTCAGAGTTTGACATCAGATATGCTTTAA

Coding sequence (CDS)

ATGGCTTCATCCACTCTTCAGTTTCTCTCCCAAACAACAACCCTTCATCTGCACCTCTTCCAACCAACTCAAGCTTTTCATACATTACCTTCATTTCCTCTAAAACATCGAAAACTCGACCTTATTTCAATAAAATGCACTACAAACTCCTCACCACTTGAACCAGTAGCAGACAGTTTTCCCACCCCAAGCCCAGAGAATGTAGCCACAACCCCTGCAGAGAACTTCCCCATTGACAAGAGAAGAGCATCCGAAATAATCAGGGACCGAAAGGCTCGAACCGAGCTCGTAAAACTGGAACCTCCCAACTTTGAGATAGGTTGGAAGAGGACTAAACCCATCAACCTAGAGAAGCCTACAGGGTATGTGATCATGGATTTTCTAGATAAGTTTGAAGGATTGATGAGTCGAGAATTCGGGTCGAAAGAGCTGCTGGTTAAGGCAGGAGAAATAGTAGCTGAAAGAGCAAGAGAAGAGGCAGAGGATTTAAGAGATGAAGGCAAAGTTGAAGATAGGATGGTCACTGAACTTTCCAGGGTTTTGAAGTTAATGGAAATGGATTTGGTAATGGTTAAAGCTGCTTATAAAGAAGAGACTCTAAATGAGAGGCTTGAACAAGCTAAGGCGAGGTGCAGTTTACTCATTGTTCAGAGTTTGACATCAGATATGCTTTAA

Protein sequence

MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSFPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIVQSLTSDML
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01255.1Spo01255.1mRNA


Homology
[Close]
BLAST of Spo01255.1 vs. NCBI nr
Match: gi|902182302|gb|KNA09901.1| (hypothetical protein SOVF_149310 [Spinacia oleracea])

HSP 1 Score: 406.0 bits (1042), Expect = 4.300e-110
Identity = 213/220 (96.82%), Postives = 217/220 (98.64%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF 60
           MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF
Sbjct: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF 60

Query: 61  PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT 120
           PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT
Sbjct: 61  PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT 120

Query: 121 GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV 180
           GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV
Sbjct: 121 GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV 180

Query: 181 LKLMEMDLVMVKAAYKEETLNERLEQAKARC--SLLIVQS 219
           LKLMEMDLVMVKAAYKEETLNERLEQAKARC  ++L+ +S
Sbjct: 181 LKLMEMDLVMVKAAYKEETLNERLEQAKARCRQAILVAKS 220
[Close]
BLAST of Spo01255.1 vs. NCBI nr
Match: gi|731364938|ref|XP_010694250.1| (PREDICTED: uncharacterized protein LOC104907080 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 314.7 bits (805), Expect = 1.300e-82
Identity = 173/221 (78.28%), Postives = 184/221 (83.26%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAF----HTLPSFPLKHRKLDLISIKCTTNSSPLEPV 60
           M SSTLQFLSQ TTLHL+L  P Q F    H  PSFPL H+KL LIS KCTTNSS  +P 
Sbjct: 1   MVSSTLQFLSQATTLHLNLLHPNQTFYISSHPSPSFPLPHQKLSLISTKCTTNSSLSQPE 60

Query: 61  -ADSFPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPIN 120
            AD+FPTPSPE  ATTP + FPI+KRR SEIIRDRKART ++K EPPNFEIGWKRTKPIN
Sbjct: 61  PADNFPTPSPEFEATTPPDQFPIEKRRKSEIIRDRKARTGVIKPEPPNFEIGWKRTKPIN 120

Query: 121 LEKPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVT 180
           LEKPTGYVIMDFLDKFEGLM REFGS ELL KAGEIVAERAREEAE LRDEGKVEDRMVT
Sbjct: 121 LEKPTGYVIMDFLDKFEGLMDREFGSIELLAKAGEIVAERAREEAEVLRDEGKVEDRMVT 180

Query: 181 ELSRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           EL RVLKLMEMDL MVKAA KEETL ER++QAKARC   I+
Sbjct: 181 ELFRVLKLMEMDLAMVKAAVKEETLIERIQQAKARCRQAIL 221
[Close]
BLAST of Spo01255.1 vs. NCBI nr
Match: gi|729357466|ref|XP_010545570.1| (PREDICTED: uncharacterized protein LOC104817896 [Tarenaya hassleriana])

HSP 1 Score: 241.5 bits (615), Expect = 1.400e-60
Identity = 130/172 (75.58%), Postives = 144/172 (83.72%), Query Frame = 1 

		  

Query: 48  TNSSPLEPVADS---FPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNF 107
           ++SSP  PV D    +PTP+PE++ TT AE FPI+KRR SEI R+RK RT L K EPPN 
Sbjct: 45  SSSSPSPPVPDEPFPYPTPAPESINTTSAEKFPIEKRRRSEITRERKRRTALEKPEPPNL 104

Query: 108 EIGWKRTKPINLEKPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLR 167
           EIGWKRTK INLEKP GYVIMDFL+KFEGLM+REFGS ELL KAGE+VAERAREEAE LR
Sbjct: 105 EIGWKRTKDINLEKPKGYVIMDFLEKFEGLMAREFGSTELLAKAGEVVAERAREEAEVLR 164

Query: 168 DEGKVEDRMVTELSRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           DEG+VEDRMVTEL RVLKLMEMDL MVKAA KEETL+ERLEQAKARC   I+
Sbjct: 165 DEGEVEDRMVTELCRVLKLMEMDLAMVKAAVKEETLSERLEQAKARCRQAIL 216
[Close]
BLAST of Spo01255.1 vs. NCBI nr
Match: gi|747099724|ref|XP_011097922.1| (PREDICTED: uncharacterized protein LOC105176722 [Sesamum indicum])

HSP 1 Score: 241.1 bits (614), Expect = 1.800e-60
Identity = 147/222 (66.22%), Postives = 163/222 (73.42%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLIS------IKCTTNSSPLE 60
           MAS+ LQFL     LHL +  P+Q  +  P+ PL    L LIS      +KCT+NS+P +
Sbjct: 1   MASNILQFLPLPRPLHLTII-PSQNQNQNPNPPLHF--LHLISRPNHFPLKCTSNSNPQQ 60

Query: 61  PVADSFPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPI 120
           P    FP P  E   T  A+ FPI+KRR SEIIRDRK+RT LVK EPPNFEIGWKRTKPI
Sbjct: 61  P---EFPNPGLET--TVSADKFPIEKRRRSEIIRDRKSRTGLVKPEPPNFEIGWKRTKPI 120

Query: 121 NLEKPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMV 180
            LEKPTGY IMDFL+K   LM REFGS  LL  AGEIVAERAREEAE LRDEGKVE+RMV
Sbjct: 121 PLEKPTGYAIMDFLEKLVELMEREFGSAALLATAGEIVAERAREEAEVLRDEGKVEERMV 180

Query: 181 TELSRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           TEL RVLKLMEMDL MVKAA KEET+NERLEQAKARC   I+
Sbjct: 181 TELCRVLKLMEMDLAMVKAAVKEETMNERLEQAKARCRQAIL 214
[Close]
BLAST of Spo01255.1 vs. NCBI nr
Match: gi|697164643|ref|XP_009591129.1| (PREDICTED: uncharacterized protein LOC104088192 [Nicotiana tomentosiformis])

HSP 1 Score: 241.1 bits (614), Expect = 1.800e-60
Identity = 138/212 (65.09%), Postives = 156/212 (73.58%), Query Frame = 1 

		  

Query: 15  LHLHLFQPTQAFHTLPSFPLK----------HRKLDLISIKCTTNSSPLEPVADSFPTPS 74
           L LH   P  + H LPS P+           H  +   +IKCT+N +P E    +F +P+
Sbjct: 6   LQLHHVHPLPSIH-LPSNPISIIPTSQPLTNHIHVKQFTIKCTSNPTP-ESSDPNFLSPT 65

Query: 75  PENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPTGYVI 134
           P +  T   E FPI+KRR SEIIRDRK+RT LVK +PPNFEIGWKRTKPINLEKP GYVI
Sbjct: 66  PTSETTISPEKFPIEKRRKSEIIRDRKSRTGLVKQDPPNFEIGWKRTKPINLEKPVGYVI 125

Query: 135 MDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRVLKLM 194
           MDFL+K E LM+R+FGS  LL K GEIVAERAREEAE LR+EGKVEDRMVTELSRVLKLM
Sbjct: 126 MDFLEKLEELMARDFGSTALLAKVGEIVAERAREEAEVLREEGKVEDRMVTELSRVLKLM 185

Query: 195 EMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           EMDL MV AA KEETLNERLEQAKARC   I+
Sbjct: 186 EMDLAMVSAAVKEETLNERLEQAKARCRQAIL 215
[Close]
BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTM6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_149310 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.000e-110
Identity = 213/220 (96.82%), Postives = 217/220 (98.64%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF 60
           MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF
Sbjct: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF 60

Query: 61  PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT 120
           PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT
Sbjct: 61  PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT 120

Query: 121 GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV 180
           GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV
Sbjct: 121 GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV 180

Query: 181 LKLMEMDLVMVKAAYKEETLNERLEQAKARC--SLLIVQS 219
           LKLMEMDLVMVKAAYKEETLNERLEQAKARC  ++L+ +S
Sbjct: 181 LKLMEMDLVMVKAAYKEETLNERLEQAKARCRQAILVAKS 220
[Close]
BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092090 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 9.100e-83
Identity = 173/221 (78.28%), Postives = 184/221 (83.26%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAF----HTLPSFPLKHRKLDLISIKCTTNSSPLEPV 60
           M SSTLQFLSQ TTLHL+L  P Q F    H  PSFPL H+KL LIS KCTTNSS  +P 
Sbjct: 1   MVSSTLQFLSQATTLHLNLLHPNQTFYISSHPSPSFPLPHQKLSLISTKCTTNSSLSQPE 60

Query: 61  -ADSFPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPIN 120
            AD+FPTPSPE  ATTP + FPI+KRR SEIIRDRKART ++K EPPNFEIGWKRTKPIN
Sbjct: 61  PADNFPTPSPEFEATTPPDQFPIEKRRKSEIIRDRKARTGVIKPEPPNFEIGWKRTKPIN 120

Query: 121 LEKPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVT 180
           LEKPTGYVIMDFLDKFEGLM REFGS ELL KAGEIVAERAREEAE LRDEGKVEDRMVT
Sbjct: 121 LEKPTGYVIMDFLDKFEGLMDREFGSIELLAKAGEIVAERAREEAEVLRDEGKVEDRMVT 180

Query: 181 ELSRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           EL RVLKLMEMDL MVKAA KEETL ER++QAKARC   I+
Sbjct: 181 ELFRVLKLMEMDLAMVKAAVKEETLIERIQQAKARCRQAIL 221
[Close]
BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Match: V4MGA7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011779mg PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.400e-59
Identity = 137/214 (64.02%), Postives = 167/214 (78.04%), Query Frame = 1 

		  

Query: 3   SSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSFPT 62
           +STL   S +T+ ++++  P        SF +++ +    ++KC++N  P +  +D   T
Sbjct: 2   ASTLLLQSLSTSTNVNVAVPRTC-----SFNVQNIRR---TVKCSSNPEPKDQFSDL--T 61

Query: 63  PSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPTGY 122
           P+PE++ TT AE FPI+KRR SEIIRDRK R  +VK EPPNFEIGWKRTK INLEKP GY
Sbjct: 62  PAPESINTTSAEKFPIEKRRRSEIIRDRKQRG-IVKPEPPNFEIGWKRTKEINLEKPKGY 121

Query: 123 VIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRVLK 182
           VIMDFL+KFEGLM+REFGSKELL KAGEIVAERAREEAE LRDEGKVE+RMVTEL RVLK
Sbjct: 122 VIMDFLEKFEGLMAREFGSKELLAKAGEIVAERAREEAEVLRDEGKVEERMVTELFRVLK 181

Query: 183 LMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           LMEMDL MVKA+ KEETL+ER+EQA+ARC   I+
Sbjct: 182 LMEMDLAMVKASVKEETLSERIEQARARCRQAIL 204
[Close]
BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Match: V4UMD3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009433mg PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.400e-59
Identity = 132/219 (60.27%), Postives = 163/219 (74.43%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSS---PLEPVA 60
           MA++   FLSQ  +   + F         PS     R  + I    T+N+S   P +P  
Sbjct: 1   MAATFFPFLSQPNSPLFNHFTSKNQTSRNPS----QRSYNSIKCSNTSNNSTPVPAQPED 60

Query: 61  DSFPTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLE 120
           +SFP+PSP ++AT  ++ FPI+KRR SEI+R+R+ART LVK EPPNFE+GWKRTK I+LE
Sbjct: 61  ESFPSPSPNSIATESSDTFPIEKRRKSEILRERRARTGLVKPEPPNFEVGWKRTKEISLE 120

Query: 121 KPTGYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTEL 180
           KPTG+VIMDFL+K +GLM R++GS  LL K GE+VAERAREEAE LRDEGKVE+RMVTEL
Sbjct: 121 KPTGFVIMDFLEKLQGLMERDYGSTALLAKVGELVAERAREEAEVLRDEGKVEERMVTEL 180

Query: 181 SRVLKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           SRVL+LMEMD+ MVKAA KEETL+ERLEQAKARC   I+
Sbjct: 181 SRVLRLMEMDMAMVKAAVKEETLSERLEQAKARCRQAIL 215
[Close]
BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Match: R0GKE9_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10010214mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.600e-58
Identity = 135/209 (64.59%), Postives = 157/209 (75.12%), Query Frame = 1 

		  

Query: 9   LSQTTTLHLHLFQPTQAFHTLPSFPLKH-RKLDLISIKCTTNSSPLEPVADSFPTPSPEN 68
           ++ T+TL L     T    T+P       R+    + KC++   P +  +D   TP+PE+
Sbjct: 19  MASTSTLLLQSLSSTNLQITVPIRTCSFGRRTFKFTTKCSSKPEPKDQFSDL--TPAPES 78

Query: 69  VATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPTGYVIMDF 128
           + TT AE FPI+KRR SEIIRDR  R  + K EPPNFEIGWKRTK INLEKP GYVIMDF
Sbjct: 79  INTTSAEKFPIEKRRRSEIIRDRTQRG-IEKPEPPNFEIGWKRTKEINLEKPKGYVIMDF 138

Query: 129 LDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRVLKLMEMD 188
           L+KFE LM+REFGSKELL KAGEIVAERAREEAE LRDEGKVE+RMVTELSRVLKLMEMD
Sbjct: 139 LEKFEALMAREFGSKELLAKAGEIVAERAREEAEVLRDEGKVEERMVTELSRVLKLMEMD 198

Query: 189 LVMVKAAYKEETLNERLEQAKARCSLLIV 217
           L MVKA+ KEETLNER+EQA+ARC   I+
Sbjct: 199 LAMVKASVKEETLNERIEQARARCRQAIL 224
[Close]
BLAST of Spo01255.1 vs. TAIR (Arabidopsis)
Match: AT1G51100.1 (unknown protein)

HSP 1 Score: 226.1 bits (575), Expect = 2.200e-59
Identity = 131/216 (60.65%), Postives = 159/216 (73.61%), Query Frame = 1 

		  

Query: 1   MASSTLQFLSQTTTLHLHLFQPTQAFHTLPSFPLKHRKLDLISIKCTTNSSPLEPVADSF 60
           MAS++   L   ++ +LH+  P +    +       R+    S KC++N    +   +  
Sbjct: 1   MASTSTLLLPSLSSKNLHIAVPIRTNSFV-------RRTTKFSTKCSSNPESKDQFINL- 60

Query: 61  PTPSPENVATTPAENFPIDKRRASEIIRDRKARTELVKLEPPNFEIGWKRTKPINLEKPT 120
            TP+PE++ TT AE FPI+KRR SEIIRDR  R  + K EPPNFEIGWKRTK INLEKP 
Sbjct: 61  -TPAPESINTTSAEKFPIEKRRRSEIIRDRTQRG-IEKPEPPNFEIGWKRTKEINLEKPK 120

Query: 121 GYVIMDFLDKFEGLMSREFGSKELLVKAGEIVAERAREEAEDLRDEGKVEDRMVTELSRV 180
           GYVIMDFL+KFE LM+REFGSKELL KAGEIVAERAREEAE LRDEGKVE+RMVTEL RV
Sbjct: 121 GYVIMDFLEKFEALMAREFGSKELLAKAGEIVAERAREEAEVLRDEGKVEERMVTELFRV 180

Query: 181 LKLMEMDLVMVKAAYKEETLNERLEQAKARCSLLIV 217
           LKLMEMDL MVKA+ K+ETL++R+EQA+ARC   I+
Sbjct: 181 LKLMEMDLAMVKASVKDETLSQRIEQARARCRQAIL 206
The following BLAST results are available for this feature:
BLAST of Spo01255.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902182302|gb|KNA09901.1|4.3e-11096.8hypothetical protein SOVF_1493... [more]
gi|731364938|ref|XP_010694250.1|1.3e-8278.2PREDICTED: uncharacterized pro... [more]
gi|729357466|ref|XP_010545570.1|1.4e-6075.5PREDICTED: uncharacterized pro... [more]
gi|747099724|ref|XP_011097922.1|1.8e-6066.2PREDICTED: uncharacterized pro... [more]
gi|697164643|ref|XP_009591129.1|1.8e-6065.0PREDICTED: uncharacterized pro... [more]
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BLAST of Spo01255.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QTM6_SPIOL3.0e-11096.8Uncharacterized protein OS=Spi... [more]
A0A0J8BCB7_BETVU9.1e-8378.2Uncharacterized protein OS=Bet... [more]
V4MGA7_EUTSA1.4e-5964.0Uncharacterized protein OS=Eut... [more]
V4UMD3_9ROSI5.4e-5960.2Uncharacterized protein OS=Cit... [more]
R0GKE9_9BRAS1.6e-5864.5Uncharacterized protein (Fragm... [more]
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BLAST of Spo01255.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01255.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G51100.12.2e-5960.6unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 146..173
scor
NoneNo IPR availablePANTHERPTHR36719FAMILY NOT NAMEDcoord: 6..221
score: 2.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
RNA-Seq Expression