Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTATTCTCTATTCTCTATTCTCTACTCGTGCAGTGCCTCGGATATTTCTATCACACTACTACTGTATATATATATCCGTTAAGTAACCAATAAGGAAGGTGAGATTAAACAAGAAAATAGAAGAGAATAATACGCAATAATTATCCTAGACAATTGGTGGAAGAGTAAAGCAATTCCAAAGATTCGGCATCAAGTTATGTACTACACAAGCACAACAACACCATATCATATTATCATCCAAGCAAACTTCCATTTTTTTCTCACTAAAATTTTCCTTTCCATTCATTCTCTTTTTTTCCTCAACCATTAATCAAATTATCCCAACTAATCTCTCTTTCTTTCTCTTGGCGGTTTGTTATAAACTCGCCCTTATTTCTCGAGCCTATGTGGACGATATAGATTAACGAGTAAAAAGAAGTTGTCTAGTACTCAAGTGTTTCTTTTTTCTTTTAAGTCTTTTTCTTTAATTCTTTGTTTTAAAGAGAAAAAGCCCAGAGGGGAATTTTCTTGGGCCATATAAAAAACAGTATTTTTTTCTTGGGAATTTCAATTGATTTCTTTCTAGATTGGAATTATTTTATCCAGTAGGAGAGAGAACGCACACAAAGAGAGAGAGAGAGGGGGGGAAAACAGAGAGAAGGCAAAATGTTGTGTAGGATGATACCAAAGAAGAAGAAGACAGGTGCAGTACCAGTATACTTGAATGTGTACGATCTTACCCCCATTAATGGCTACGCTTACTGGCTTGGTCTTGGTGTCTACCATTCCGGTGTTCAAGGTAATCTTTTTCTTTCTTCATTTCTGTATTTTTTTAATCAGATTCAGATCTGTTTTTGGCGGTAGTTGTGAAAATTAAAATGTGGGTTTCTTTGGATTTATGTTAATTTTTAATGGGTATTTTTTTAAGATTAATTTTGGTTTGGTATTTTATGTTTATTTTGTTGCTCAAAATTGGGTTGTTAACTTGTTATTGGTTCTATTTTTGCTTGAATTGTAGTCGGGCTTTTTTTGTAGGATTTTGACGTTTTTTATTGAGAAACTTTCAGTAGATCTTTTGATTCAGGAATTAGGGATTTTTTCTGTATTTTTTTTACTAGAATTAAAAGAAATTTGAAACTTTTGGGCTAAATTTGTTTTCTCAGATAGTCAGGTGCATTAGTTTAGTTAGTGATGAGATCATGATTTGTTGTTCGTTTCGTTATTGGCTTAAAATAGAAAATGTGCAGATGATAGGAATACTGTAGCATGAGATAATGGAATTTGTTGCTATAATTCTGGGATTAGATTAGGATAGTGTTCTGTTTGTGGATCCATGGGAGTAGAGTAGTAGACCCCTCTATTCTTGGAGGATTTATGGCTGTACGGCTGTACCTTAAGTGTATAAGTGTCATTTTAGTGTTTAATACTCGGGGTGTATGAGGATTGTACCTAGGTACTTTAGGTTGGATTATGATTGAAGATTTCCATGTGCTAGACTTATGTTCATGGGGCATTGTTATCGGACAATTTTTACTATGTTTTCTTCACCTTCTAAGCAGAATGAAGTTCAGTTTAGATCTAACAATCACATTACCAGCCTGAATTAAGCTCAGATGAGGGGAATTCAGGTGAAAAACGGACCGTAGTGATTCCGAACCTAGGATGTAAATGTTGAACTAGATAGCTATAGGCTTATACTTCTTCCCTTCCATTTACATGTATTTGTTCCTTCAACCTTATAAGTTAAAGAGTGTGGTTAGAATTTGCTTATAGTTTTTCAGTGGTGTCAGTTGTATTAAGGGAGTAATGGTGATGGGTAATTGATTTTATGTTCTATTGTTCATGTTTCCTATTGTAAATGTTGTGCTTTGAGACTGAATTATGCTCAATTGTTCAGTGCATGGAATTGAGTATGCTTTCGGAGCTCATGATCATGCCACAACTGGGGTATTTGAAGTGGAACCGAAGCAGTGCCCTGGATTTACATTCCGGAAATCAATCTTGATAGGAAGAACAGATTTAGGGGCTAAAGAAGTTCGAGCTTTGATGGAGAAACTGTCTAAAGAGTACTTTGGCAATACTTACCATCTTATTAGCAAGAACTGTAACCACTTTTGCAATGATCTATGTATACGTTTAACTGGAAGGCCAATTCCAAGTTGGGTCAATCGACTAGCTCGACTGGGTAAGATGTTTCTCCATATTTTTTATTCGTTTTTATAATCAAGTGCTTTGAGTATATTAATATACATGTTGCTGCTCATGGTCTTTTTAATTCCATGATTTGGTGATGAATTTCTGTGCTTTGGTCCACTCTGAAGTGCTTCTTCTATAATGGGTTATTGTTGCATGAGTCATGCTTCAACTAAATGTTGTTTAGTGCCCGTATAATAAAAATACTCAAGTGTGTTTCAGTGGTGTGACAATAATGGTCTCATAGACTATATTAAATCTCTTTTCATGTTAAAGTTTCAGTGTGTTGTTAGTAACTACTAAAGTACAAAATTTGGTAGACTATAAACTTATAATTTCCCCGCCATCTTTTAGTGACAAATACACGATAACATAACGCGAGGGAGGTGGAAACTGAAGTGCATACACTAGTTGTTGAAAAGTGAAAATGCCTTGGTTCCCTTGTTATCTGTTGTTACCAACAGTCAACATCTGGTGTAAGCAAGATAGACTTTTGTGAGAGATGTGAATTTTGTTATTTCAAGTTTTTAGTTGTAATTTTAAGAGTCAATGCTTGTTGGTGGCCTGGTGGGTAAAGATTTTGCTATTAGCTGAGAAATTTCTTATAGAGTTTTGTTTGAATTGTTTATATGGAATTATGGATACCTCGTGTCTTTCTACCATATGTAATTATTTGGTGATTTGGTAAAATGTGAGGTTGGTGGTTCAAGAATTCAGGTTTTATTTAGAGGTGTCTGTTAATGTCTCAAACATTTCCCTGTTATGATCCAATGTTTTTTTTTCTTTTAGGGGGTGCACTGATCGTTGATGTAAAAGAAAAACTGATACTTAGGATATAGTCTTTCTCTATTATGTTACTTGGACTTGCTTAGACATGGATATTTGCCATTTATTCAATTATTCTCGTTGGTCTAAATTGAAGTGTAAGTAATCATACCCATGTCGGAGTGTCAATGAATTAACACGGGGTAGTTGAGGTGAAATAAAAAAATAGGTTATGCTAAACAAATGCTAAGAGTTTCTTTCGGAGTATTGCTTCAATCTTAAAATTGTTTTCCATGAAAATCATTTATGTTCAAAACTAAAAGAAATATACCAAAGTCCAATGAGTGATCTTTTTGCTAAATCATTTTTTTTTCTTCCAAATTCAAGGTTTACTATGCAAATGTGTGCTCCCAGCAGCTTTGGATGAAGCTAAGGTTCGCCATATTAGGGCTGAAAGCAAGGCCCGCAGTGAAGTGGATAAAAAAAAGTTGAGAAGCCAATCAAATAGGTTTGAACCCTCGAATTCTACTTCATCAACATTGTCTGATTGTTCTACAACTTCTGCTAGCAGAAGTAGGAGGCAGAGACGCTGTATTCCTCCATCTTCGTCTTTGATTTGTGCTTATCCTCAGCAGGAAGCTGTTTCATAGAGAGTATTTATTTATTTTAGGTTTGCAGTGTAAATTTGTGATGCAGACATATTTGGTAGAAGGTGTATGTTTCAATTATTTTTAATATTTCTCTGATAATTTCTGTTAACCAGCTGCTAGGGAAAGTAATGCAGCAGTCCCTCAAGTGTATCAAGTTTCTTATTACGGCGTAAATTGCCTGTTAATGATAGTGCTTAATCCAAGCCTAACCAGGGTGATAATTGTTGGTTGGAACAGTTCTGTGAAGGTTATATGGGACAATCTTTTTATGTTGCTCCCTAAATTAAGGGTACTTTCTATTTCTATTCAATTTAAATTTTAGAAATAGTTGTATTTTATTTGAACTTATTTTGTCAGAAATTTGTTTAACTTGTAAGTTCGGAACTTAATGCCGAATTACGAAGTAGGAGTACAGAGTATAAGATGGATGCACTTTTTGCAAAAGAAAAAGCCCTTGATTTTGAGGTCTTTT AACTATTCTCTATTCTCTATTCTCTACTCGTGCAGTGCCTCGGATATTTCTATCACACTACTACTGTATATATATATCCGTTAAGTAACCAATAAGGAAGGTGAGATTAAACAAGAAAATAGAAGAGAATAATACGCAATAATTATCCTAGACAATTGGTGGAAGAGTAAAGCAATTCCAAAGATTCGGCATCAAGTTATGTACTACACAAGCACAACAACACCATATCATATTATCATCCAAGCAAACTTCCATTTTTTTCTCACTAAAATTTTCCTTTCCATTCATTCTCTTTTTTTCCTCAACCATTAATCAAATTATCCCAACTAATCTCTCTTTCTTTCTCTTGGCGGTTTGTTATAAACTCGCCCTTATTTCTCGAGCCTATGTGGACGATATAGATTAACGAGTAAAAAGAAGTTGTCTAGTACTCAAGTGTTTCTTTTTTCTTTTAAGTCTTTTTCTTTAATTCTTTGTTTTAAAGAGAAAAAGCCCAGAGGGGAATTTTCTTGGGCCATATAAAAAACAGTATTTTTTTCTTGGGAATTTCAATTGATTTCTTTCTAGATTGGAATTATTTTATCCAGTAGGAGAGAGAACGCACACAAAGAGAGAGAGAGAGGGGGGGAAAACAGAGAGAAGGCAAAATGTTGTGTAGGATGATACCAAAGAAGAAGAAGACAGGTGCAGTACCAGTATACTTGAATGTGTACGATCTTACCCCCATTAATGGCTACGCTTACTGGCTTGGTCTTGGTGTCTACCATTCCGGTGTTCAAGTGCATGGAATTGAGTATGCTTTCGGAGCTCATGATCATGCCACAACTGGGGTATTTGAAGTGGAACCGAAGCAGTGCCCTGGATTTACATTCCGGAAATCAATCTTGATAGGAAGAACAGATTTAGGGGCTAAAGAAGTTCGAGCTTTGATGGAGAAACTGTCTAAAGAGTACTTTGGCAATACTTACCATCTTATTAGCAAGAACTGTAACCACTTTTGCAATGATCTATGTATACGTTTAACTGGAAGGCCAATTCCAAGTTGGGTCAATCGACTAGCTCGACTGGGTTTACTATGCAAATGTGTGCTCCCAGCAGCTTTGGATGAAGCTAAGGTTCGCCATATTAGGGCTGAAAGCAAGGCCCGCAGTGAAGTGGATAAAAAAAAGTTGAGAAGCCAATCAAATAGGTTTGAACCCTCGAATTCTACTTCATCAACATTGTCTGATTGTTCTACAACTTCTGCTAGCAGAAGTAGGAGGCAGAGACGCTGTATTCCTCCATCTTCGTCTTTGATTTGTGCTTATCCTCAGCAGGAAGCTGTTTCATAGAGAGTATTTATTTATTTTAGGTTTGCAGTGTAAATTTGTGATGCAGACATATTTGGTAGAAGGTGTATGTTTCAATTATTTTTAATATTTCTCTGATAATTTCTGTTAACCAGCTGCTAGGGAAAGTAATGCAGCAGTCCCTCAAGTGTATCAAGTTTCTTATTACGGCGTAAATTGCCTGTTAATGATAGTGCTTAATCCAAGCCTAACCAGGGTGATAATTGTTGGTTGGAACAGTTCTGTGAAGGTTATATGGGACAATCTTTTTATGTTGCTCCCTAAATTAAGGGTACTTTCTATTTCTATTCAATTTAAATTTTAGAAATAGTTGTATTTTATTTGAACTTATTTTGTCAGAAATTTGTTTAACTTGTAAGTTCGGAACTTAATGCCGAATTACGAAGTAGGAGTACAGAGTATAAGATGGATGCACTTTTTGCAAAAGAAAAAGCCCTTGATTTTGAGGTCTTTT ATGTTGTGTAGGATGATACCAAAGAAGAAGAAGACAGGTGCAGTACCAGTATACTTGAATGTGTACGATCTTACCCCCATTAATGGCTACGCTTACTGGCTTGGTCTTGGTGTCTACCATTCCGGTGTTCAAGTGCATGGAATTGAGTATGCTTTCGGAGCTCATGATCATGCCACAACTGGGGTATTTGAAGTGGAACCGAAGCAGTGCCCTGGATTTACATTCCGGAAATCAATCTTGATAGGAAGAACAGATTTAGGGGCTAAAGAAGTTCGAGCTTTGATGGAGAAACTGTCTAAAGAGTACTTTGGCAATACTTACCATCTTATTAGCAAGAACTGTAACCACTTTTGCAATGATCTATGTATACGTTTAACTGGAAGGCCAATTCCAAGTTGGGTCAATCGACTAGCTCGACTGGGTTTACTATGCAAATGTGTGCTCCCAGCAGCTTTGGATGAAGCTAAGGTTCGCCATATTAGGGCTGAAAGCAAGGCCCGCAGTGAAGTGGATAAAAAAAAGTTGAGAAGCCAATCAAATAGGTTTGAACCCTCGAATTCTACTTCATCAACATTGTCTGATTGTTCTACAACTTCTGCTAGCAGAAGTAGGAGGCAGAGACGCTGTATTCCTCCATCTTCGTCTTTGATTTGTGCTTATCCTCAGCAGGAAGCTGTTTCATAG MLCRMIPKKKKTGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGIEYAFGAHDHATTGVFEVEPKQCPGFTFRKSILIGRTDLGAKEVRALMEKLSKEYFGNTYHLISKNCNHFCNDLCIRLTGRPIPSWVNRLARLGLLCKCVLPAALDEAKVRHIRAESKARSEVDKKKLRSQSNRFEPSNSTSSTLSDCSTTSASRSRRQRRCIPPSSSLICAYPQQEAVS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01256.1 vs. NCBI nr
Match: gi|902145781|gb|KNA05002.1| (hypothetical protein SOVF_194450 [Spinacia oleracea]) HSP 1 Score: 459.1 bits (1180), Expect = 4.300e-126 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1
BLAST of Spo01256.1 vs. NCBI nr
Match: gi|731316816|ref|XP_010665872.1| (PREDICTED: deSI-like protein At4g17486 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 429.1 bits (1102), Expect = 4.800e-117 Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 1
BLAST of Spo01256.1 vs. NCBI nr
Match: gi|731385977|ref|XP_010648702.1| (PREDICTED: deSI-like protein At4g17486 [Vitis vinifera]) HSP 1 Score: 333.6 bits (854), Expect = 2.800e-88 Identity = 158/217 (72.81%), Postives = 191/217 (88.02%), Query Frame = 1
BLAST of Spo01256.1 vs. NCBI nr
Match: gi|1009134975|ref|XP_015884736.1| (PREDICTED: deSI-like protein At4g17486 [Ziziphus jujuba]) HSP 1 Score: 332.4 bits (851), Expect = 6.100e-88 Identity = 162/219 (73.97%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of Spo01256.1 vs. NCBI nr
Match: gi|657945234|ref|XP_008378831.1| (PREDICTED: deSI-like protein At4g17486 [Malus domestica]) HSP 1 Score: 330.9 bits (847), Expect = 1.800e-87 Identity = 161/219 (73.52%), Postives = 178/219 (81.28%), Query Frame = 1
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCK2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194450 PE=4 SV=1) HSP 1 Score: 459.1 bits (1180), Expect = 3.000e-126 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ44_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031160 PE=4 SV=1) HSP 1 Score: 429.1 bits (1102), Expect = 3.400e-117 Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 1
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Match: F6H3J6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05960 PE=4 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 1.900e-88 Identity = 158/217 (72.81%), Postives = 191/217 (88.02%), Query Frame = 1
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Match: M5Y0E6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010937mg PE=4 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 2.100e-87 Identity = 163/219 (74.43%), Postives = 179/219 (81.74%), Query Frame = 1
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Match: V4UH60_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009362mg PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 4.700e-87 Identity = 160/222 (72.07%), Postives = 189/222 (85.14%), Query Frame = 1
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Match: PPDEX_ARATH (DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 9.200e-52 Identity = 90/179 (50.28%), Postives = 128/179 (71.51%), Query Frame = 1
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Match: DESI2_XENLA (Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.200e-28 Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 1
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Match: DESI2_MOUSE (Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.200e-27 Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 1
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Match: DESI2_RAT (Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.200e-27 Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 1
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Match: DESI2_DANRE (Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.500e-27 Identity = 72/196 (36.73%), Postives = 111/196 (56.63%), Query Frame = 1
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Match: AT5G25170.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 310.8 bits (795), Expect = 6.700e-85 Identity = 149/219 (68.04%), Postives = 180/219 (82.19%), Query Frame = 1
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Match: AT2G25190.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 260.8 bits (665), Expect = 8.000e-70 Identity = 135/228 (59.21%), Postives = 173/228 (75.88%), Query Frame = 1
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Match: AT1G80690.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 257.7 bits (657), Expect = 6.800e-69 Identity = 132/220 (60.00%), Postives = 164/220 (74.55%), Query Frame = 1
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Match: AT4G31980.1 (unknown protein) HSP 1 Score: 248.4 bits (633), Expect = 4.100e-66 Identity = 119/210 (56.67%), Postives = 160/210 (76.19%), Query Frame = 1
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Match: AT1G47740.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 231.9 bits (590), Expect = 4.000e-61 Identity = 112/200 (56.00%), Postives = 138/200 (69.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01256.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01256.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01256.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01256.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|