Spo01401 (gene)

Overview
NameSpo01401
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionThylakoid lumenal 16.5 kDa protein, chloroplast, putative
Locationchr2 : 30054238 .. 30057062 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAAAAATGACCCCATGAGCTATACTTGATCTATTGGATCAGAGAAATCCAGCAAAATCTTATCTCTTTAAAGTCTCCTTCACTGATTTTTTTCCCACCAAAAAAACTGTATACCAAAAGTGAAGTTGTAGGAAAGAAGAAAGAAACTAACAAAACAAAAATGGCATTAGCAGCAACCTTCCTCTCAACTGCTAACATCTTCCCTAATCTCTCATCATCATCCAATTCATCATCACCCACATTATCATCATCATCTTCATCATCAATTTCACTCTGCCTTCAAAAAAACAAGAATTTTAATTTATTAGTACCCTTTTGCAAAACAGGAGAGACAGATTCATCATCATCTACCCCATGTGTTAGCAAAAGAAGCTTTGCTCTTTCCCTGTCTTCTGCCTTTCTGATATCATTGGCAGGGAAAGGTGTGCCACTTGCCGAGGCGGCCCCGTTGGAAGATGAGGATGATTTGGAGCTCTTGGAGAAGGTAAAGAGGGATAGGAAGAAGAGGCTTGAAAGACAAGGAGCTATTAACTCATCCACTAAGGAAAAAGGTCTCATCTTTTCTGTTATTTTTCTTTTTTCCTGAATGTGAGCAACAGAATTGAACTTTATCAATACTATGTTATCGAACTAGGATATCCTTATCGGATAGGGGTACGTGTCCAAGTGTCCAACACCGCTATTTTGTGAAAACATTGCATGATTTTGGTCTTAAATGAAGTGTCGGAGTGTCCATACTCCATATTCATGTCCGAGTATTGAGGATCCGACACGGGTATATTTGAGGTAAAATGAAGAATTCAGGGATGTTTCAAGGTACTCATTGATAATTCGAAAATGATAAAGGTCGCAACATGCGACATTTAAGTCGTGTCACAATAATGACATGGCATGCTTATGTGTCATGATTTAAATTGGAAACTAAAATATTTAACATGTATAACCTATTATACATATTACAAAAAAATGTCTGAAAATCTTAATATTCTAATTTGTTTCTTTCTTTATACCGATTACCTTATTTACATATTTTTATAGTAAAAATATTGCATTGGTAGTAAAAATATTTCGATGATGCATAGTCTACGTGGCGTCTATATGTACCAATTAAACTCTGACACGTAAGATTGCGACAACTAAATGTTGTCGCAACTTGCGACCTTTATCATCACCCTTGATAATTATCCCACTAGATGAGGATTCTAGTAGGAGAAGAGTTCTTTATTGATCAGCAGTTCTTTTGATACCATATTTGAGAACATAATTGCTCAAGGTTTTCTACTGGTTCTGACATAAGTATGTTACTTGGACTCCAAAAGTGCCGAATTTCGGATACGGTGTGACGGTGTCTGACATGGATATGCCTACATAGGTTCTGAATCTGTACGCTGAACTGAAAGGATTGTGAATTATGATTGTTTTTCTTTTGATGTTATCTTCTATGTATCTGTTGAAAGATTTGTGGAGTCTAATTGATTGAATTGTACAGTTCTGTCTGTATTTCAAGGTTTCAGTATAATAAGGTACCCTTCTTCTGATTTACTGCTGAAAATCATACAAAAAATACATTGATTGTAATGTGGTCAAATCGTGAATTATTGTTATAAAAATCCTGCGCCGTTTTCCGTTTGTTCTAATCAATTATTGTTGTGTAAAACTCATTTTAAGCAGTAGACATTTGCAGAGTTCAAAGCATTAGAGTATAAATCTTATGCTCAGTGGCAGTATATTTTTTATGTTCTGTAATCTCCCGAGTTCTGCAGTACTGTGATACTAATGATTATCGTAAGTTCAGTACAATGCTTATGAAAGCATTTGTTTCTTTCTTTCTTACCATCTGATGTCCAAAATCATCAGGGTATCTGCAAGATGTCGTGTACAAGTTGAGCGAGGTAGGCCAAGCTATAGATAGTAATGATCTGAAAGCTGCTAGCTCAGTCCTTGGCGCTAGCACTGACACTGATTGGATTAAGAAGGCTAATTCAGCCTTCACCAAGGTCTGCCCTCATTCTTTTTGTCATAGTACAATGCAGAATTCGAGTGAGATGCTAATCATTTGCAGATTTCTGAGTAAATTTTCTGTTTCTTTTGAACCACCCGCAAACAGCTAAGCTTAGACGCCGAGGAGAAGGAAGAAGTTGACATGTTCAACACCTCAATCTCGAAGCTGATATCAACTGGTAAGTCTAGGAAACTCTCTAAAGCTTACTTTTTCTGCATTATGGTAACTGATACTGATATTTCCTTCTCATTTGTAGTGGCTCTGAAAGATGTCGAATCATCTAAGGTCGCCTTTGTATCTTCAGCTAGTGCGTTCGAGAAATGGACTGCATTAACAGGACTTAATGGAGTTCTCAAGGGAATTTGAAAAAGAATTTCTGATTCTGACTGTGTTCGTCTTCTTTTTGAGCGAGAGTTGTATCCACTTCCCTCTGTTTAAGTGTACACTTCTTACACTAGATCGGCAACAGTGTTTCTCTGTGAATTTTGCCATATCTAAGGCCAAGCACTAGCATTCTTTTTGCTTGTAACTAATCATCAGTCATACTATAGTTGTAATTTATCATTTTCGGAATTTATATATCAGTTTGAAGAGCATATGTGACTGATAAAAACTGATTTCTATCTCCTCGATCCAACTGTTGGCCGCACACGGCTTGATAGATCCACAATATTAGAGTAGTTGTGTAACGAAATTGAAGAATGTGATAGTACATATTCGAGTAGTATCATACAATACATAAATGGTTGTTAAGTTATAACAGAACCAGTAATTTGACAGCATAACGTTACAGACAAATCTCTGTAGGAGCTACAAATTTCC

mRNA sequence

TGTAAAAATGACCCCATGAGCTATACTTGATCTATTGGATCAGAGAAATCCAGCAAAATCTTATCTCTTTAAAGTCTCCTTCACTGATTTTTTTCCCACCAAAAAAACTGTATACCAAAAGTGAAGTTGTAGGAAAGAAGAAAGAAACTAACAAAACAAAAATGGCATTAGCAGCAACCTTCCTCTCAACTGCTAACATCTTCCCTAATCTCTCATCATCATCCAATTCATCATCACCCACATTATCATCATCATCTTCATCATCAATTTCACTCTGCCTTCAAAAAAACAAGAATTTTAATTTATTAGTACCCTTTTGCAAAACAGGAGAGACAGATTCATCATCATCTACCCCATGTGTTAGCAAAAGAAGCTTTGCTCTTTCCCTGTCTTCTGCCTTTCTGATATCATTGGCAGGGAAAGGTGTGCCACTTGCCGAGGCGGCCCCGTTGGAAGATGAGGATGATTTGGAGCTCTTGGAGAAGGTAAAGAGGGATAGGAAGAAGAGGCTTGAAAGACAAGGAGCTATTAACTCATCCACTAAGGAAAAAGGGTATCTGCAAGATGTCGTGTACAAGTTGAGCGAGGTAGGCCAAGCTATAGATAGTAATGATCTGAAAGCTGCTAGCTCAGTCCTTGGCGCTAGCACTGACACTGATTGGATTAAGAAGGCTAATTCAGCCTTCACCAAGCTAAGCTTAGACGCCGAGGAGAAGGAAGAAGTTGACATGTTCAACACCTCAATCTCGAAGCTGATATCAACTGTGGCTCTGAAAGATGTCGAATCATCTAAGGTCGCCTTTGTATCTTCAGCTAGTGCGTTCGAGAAATGGACTGCATTAACAGGACTTAATGGAGTTCTCAAGGGAATTTGAAAAAGAATTTCTGATTCTGACTGTGTTCGTCTTCTTTTTGAGCGAGAGTTGTATCCACTTCCCTCTGTTTAAGTGTACACTTCTTACACTAGATCGGCAACAGTGTTTCTCTGTGAATTTTGCCATATCTAAGGCCAAGCACTAGCATTCTTTTTGCTTGTAACTAATCATCAGTCATACTATAGTTGTAATTTATCATTTTCGGAATTTATATATCAGTTTGAAGAGCATATGTGACTGATAAAAACTGATTTCTATCTCCTCGATCCAACTGTTGGCCGCACACGGCTTGATAGATCCACAATATTAGAGTAGTTGTGTAACGAAATTGAAGAATGTGATAGTACATATTCGAGTAGTATCATACAATACATAAATGGTTGTTAAGTTATAACAGAACCAGTAATTTGACAGCATAACGTTACAGACAAATCTCTGTAGGAGCTACAAATTTCC

Coding sequence (CDS)

ATGGCATTAGCAGCAACCTTCCTCTCAACTGCTAACATCTTCCCTAATCTCTCATCATCATCCAATTCATCATCACCCACATTATCATCATCATCTTCATCATCAATTTCACTCTGCCTTCAAAAAAACAAGAATTTTAATTTATTAGTACCCTTTTGCAAAACAGGAGAGACAGATTCATCATCATCTACCCCATGTGTTAGCAAAAGAAGCTTTGCTCTTTCCCTGTCTTCTGCCTTTCTGATATCATTGGCAGGGAAAGGTGTGCCACTTGCCGAGGCGGCCCCGTTGGAAGATGAGGATGATTTGGAGCTCTTGGAGAAGGTAAAGAGGGATAGGAAGAAGAGGCTTGAAAGACAAGGAGCTATTAACTCATCCACTAAGGAAAAAGGGTATCTGCAAGATGTCGTGTACAAGTTGAGCGAGGTAGGCCAAGCTATAGATAGTAATGATCTGAAAGCTGCTAGCTCAGTCCTTGGCGCTAGCACTGACACTGATTGGATTAAGAAGGCTAATTCAGCCTTCACCAAGCTAAGCTTAGACGCCGAGGAGAAGGAAGAAGTTGACATGTTCAACACCTCAATCTCGAAGCTGATATCAACTGTGGCTCTGAAAGATGTCGAATCATCTAAGGTCGCCTTTGTATCTTCAGCTAGTGCGTTCGAGAAATGGACTGCATTAACAGGACTTAATGGAGTTCTCAAGGGAATTTGA

Protein sequence

MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDSSSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQGAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01401.1Spo01401.1mRNA


Homology
[Close]
BLAST of Spo01401.1 vs. NCBI nr
Match: gi|902196520|gb|KNA13127.1| (hypothetical protein SOVF_119550 [Spinacia oleracea])

HSP 1 Score: 424.9 bits (1091), Expect = 9.500e-116
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 

		  

Query: 1   MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS 60
           MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS
Sbjct: 1   MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS 60

Query: 61  SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ 120
           SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ
Sbjct: 61  SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ 120

Query: 121 GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL 180
           GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL
Sbjct: 121 GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL 180

Query: 181 DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI
Sbjct: 181 DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 237
[Close]
BLAST of Spo01401.1 vs. NCBI nr
Match: gi|731353237|ref|XP_010687957.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 316.6 bits (810), Expect = 3.600e-83
Identity = 184/234 (78.63%), Postives = 203/234 (86.75%), Query Frame = 1 

		  

Query: 6   TFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNF--NLLVPFCKTGETDSSSS 65
           TFLST N FP+  SSSNS  P+  +SSSSS+S  LQKN     NLLV FCK+  + SSSS
Sbjct: 5   TFLSTTNTFPH-HSSSNSLLPSSLTSSSSSLSFSLQKNNVMRQNLLVTFCKSESSSSSSS 64

Query: 66  TPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQGAI 125
           +PCVSKRSFALSLSSA L+S+AGKG P AEAAPLE EDDLELLEKVK+DRKKRLERQG I
Sbjct: 65  SPCVSKRSFALSLSSALLLSMAGKGEPHAEAAPLEAEDDLELLEKVKKDRKKRLERQGVI 124

Query: 126 NSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDAE 185
           NSSTKEKGYLQD+VYKLS VGQAI+SNDL AASSVLG STDTDWIKKANSAFTKLSL  E
Sbjct: 125 NSSTKEKGYLQDLVYKLSAVGQAIESNDLNAASSVLGTSTDTDWIKKANSAFTKLSLGPE 184

Query: 186 EKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           E EEV+MFNTSIS+LIS+VA KDVESSK+AFVSSASAFEKWTALTGL+G+LKG+
Sbjct: 185 ETEEVNMFNTSISELISSVAQKDVESSKIAFVSSASAFEKWTALTGLDGLLKGL 237
[Close]
BLAST of Spo01401.1 vs. NCBI nr
Match: gi|802640446|ref|XP_012078816.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Jatropha curcas])

HSP 1 Score: 234.6 bits (597), Expect = 1.800e-58
Identity = 143/235 (60.85%), Postives = 170/235 (72.34%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDSSS 62
           +A TFLSTAN   + SSSS+SSS   S +  + I    QK  NF   +  CK     S +
Sbjct: 1   MATTFLSTANSLLSSSSSSSSSSSLFSQTLKAPILYYPQK-ANFKKQLLLCKAFSESSPT 60

Query: 63  STPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQGA 122
           ++P  +KRS ++   ++F+ SL  KG   A AA LE +DD ELLEKVK+DRKKRLERQG 
Sbjct: 61  NSPISTKRSLSICFITSFVFSLGSKGNCSANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 123 INSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDA 182
           INSS KEKGYLQDVVYKLS VGQAID NDL  ASSVLGASTDTDW++KAN AF+KLS   
Sbjct: 121 INSSNKEKGYLQDVVYKLSRVGQAIDKNDLSTASSVLGASTDTDWVQKANIAFSKLSSSP 180

Query: 183 EEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           EEK EVD FN+S++ LIS+V   D+ESSK+AFVSSASAFEKWT LTGL   LKG+
Sbjct: 181 EEKTEVDNFNSSLASLISSVVRNDIESSKIAFVSSASAFEKWTTLTGLIEQLKGL 234
[Close]
BLAST of Spo01401.1 vs. NCBI nr
Match: gi|449443065|ref|XP_004139301.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.900e-55
Identity = 141/244 (57.79%), Postives = 171/244 (70.08%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISL---------CLQKNKNFNLLVPFC 62
           +A  FLSTAN F     SS  SSP+ SSSSSSS            CL  + N   LV  C
Sbjct: 1   MATAFLSTANTF----HSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLV-IC 60

Query: 63  KTGETDSSSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDR 122
           K+  +D  S  P ++KR+ ++   S+F+  L G+G   A AA LE +DD ELLEKVK+DR
Sbjct: 61  KSS-SDPPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDR 120

Query: 123 KKRLERQGAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANS 182
           KKRLE+QG I+S+ KEKGYLQ++VYKLS+VGQAID+ND   ASSVLG S+D DW+KKANS
Sbjct: 121 KKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANS 180

Query: 183 AFTKLSLDAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGV 238
           AF KLS   EEK EVD FN+S++ LIS+V   DVESSK AFV+SASAFEKWTAL GL G 
Sbjct: 181 AFNKLSSSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQ 238
[Close]
BLAST of Spo01401.1 vs. NCBI nr
Match: gi|224142609|ref|XP_002324647.1| (hypothetical protein POPTR_0018s12970g [Populus trichocarpa])

HSP 1 Score: 223.4 bits (568), Expect = 4.200e-55
Identity = 140/239 (58.58%), Postives = 173/239 (72.38%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS-- 62
           +A TFLSTA   P LSSS+ SS  +L++     +  C Q+  N    +P CK    +S  
Sbjct: 1   MATTFLSTAK--PFLSSSTPSSLSSLTNRPL--LFSCPQQKCNPRRPLPSCKALSDESLP 60

Query: 63  --SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLE 122
             ++S   ++KRS ++   ++F+ SLA +G   + AA LE +DD ELLEKVKRDRKKRLE
Sbjct: 61  VPAASPIIITKRSLSICFLTSFVFSLASRGSSSSNAAILEADDDEELLEKVKRDRKKRLE 120

Query: 123 RQGAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKL 182
           RQG I+S+ KEKGYLQD+VYKLS+VGQAID+NDL  ASSVLG STDTDW+KKAN AFTKL
Sbjct: 121 RQGVISSANKEKGYLQDLVYKLSKVGQAIDNNDLSTASSVLGGSTDTDWVKKANIAFTKL 180

Query: 183 SLDAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           S   EEK EVD FN+S+S LIS+V   D+ESSK AFVSSA+AFEKWT LTGL G LKG+
Sbjct: 181 SSSPEEKIEVDTFNSSLSSLISSVTSNDIESSKTAFVSSATAFEKWTTLTGLFGQLKGL 235
[Close]
BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2W1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119550 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 6.600e-116
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 

		  

Query: 1   MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS 60
           MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS
Sbjct: 1   MALAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS 60

Query: 61  SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ 120
           SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ
Sbjct: 61  SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQ 120

Query: 121 GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL 180
           GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL
Sbjct: 121 GAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSL 180

Query: 181 DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI
Sbjct: 181 DAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 237
[Close]
BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSF0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g194150 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.500e-83
Identity = 184/234 (78.63%), Postives = 203/234 (86.75%), Query Frame = 1 

		  

Query: 6   TFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNF--NLLVPFCKTGETDSSSS 65
           TFLST N FP+  SSSNS  P+  +SSSSS+S  LQKN     NLLV FCK+  + SSSS
Sbjct: 5   TFLSTTNTFPH-HSSSNSLLPSSLTSSSSSLSFSLQKNNVMRQNLLVTFCKSESSSSSSS 64

Query: 66  TPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQGAI 125
           +PCVSKRSFALSLSSA L+S+AGKG P AEAAPLE EDDLELLEKVK+DRKKRLERQG I
Sbjct: 65  SPCVSKRSFALSLSSALLLSMAGKGEPHAEAAPLEAEDDLELLEKVKKDRKKRLERQGVI 124

Query: 126 NSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDAE 185
           NSSTKEKGYLQD+VYKLS VGQAI+SNDL AASSVLG STDTDWIKKANSAFTKLSL  E
Sbjct: 125 NSSTKEKGYLQDLVYKLSAVGQAIESNDLNAASSVLGTSTDTDWIKKANSAFTKLSLGPE 184

Query: 186 EKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           E EEV+MFNTSIS+LIS+VA KDVESSK+AFVSSASAFEKWTALTGL+G+LKG+
Sbjct: 185 ETEEVNMFNTSISELISSVAQKDVESSKIAFVSSASAFEKWTALTGLDGLLKGL 237
[Close]
BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Match: A0A067K858_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13351 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.300e-58
Identity = 143/235 (60.85%), Postives = 170/235 (72.34%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDSSS 62
           +A TFLSTAN   + SSSS+SSS   S +  + I    QK  NF   +  CK     S +
Sbjct: 1   MATTFLSTANSLLSSSSSSSSSSSLFSQTLKAPILYYPQK-ANFKKQLLLCKAFSESSPT 60

Query: 63  STPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLERQGA 122
           ++P  +KRS ++   ++F+ SL  KG   A AA LE +DD ELLEKVK+DRKKRLERQG 
Sbjct: 61  NSPISTKRSLSICFITSFVFSLGSKGNCSANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 123 INSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDA 182
           INSS KEKGYLQDVVYKLS VGQAID NDL  ASSVLGASTDTDW++KAN AF+KLS   
Sbjct: 121 INSSNKEKGYLQDVVYKLSRVGQAIDKNDLSTASSVLGASTDTDWVQKANIAFSKLSSSP 180

Query: 183 EEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           EEK EVD FN+S++ LIS+V   D+ESSK+AFVSSASAFEKWT LTGL   LKG+
Sbjct: 181 EEKTEVDNFNSSLASLISSVVRNDIESSKIAFVSSASAFEKWTTLTGLIEQLKGL 234
[Close]
BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LI29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.300e-55
Identity = 141/244 (57.79%), Postives = 171/244 (70.08%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISL---------CLQKNKNFNLLVPFC 62
           +A  FLSTAN F     SS  SSP+ SSSSSSS            CL  + N   LV  C
Sbjct: 1   MATAFLSTANTF----HSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLV-IC 60

Query: 63  KTGETDSSSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDR 122
           K+  +D  S  P ++KR+ ++   S+F+  L G+G   A AA LE +DD ELLEKVK+DR
Sbjct: 61  KSS-SDPPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDR 120

Query: 123 KKRLERQGAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANS 182
           KKRLE+QG I+S+ KEKGYLQ++VYKLS+VGQAID+ND   ASSVLG S+D DW+KKANS
Sbjct: 121 KKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANS 180

Query: 183 AFTKLSLDAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGV 238
           AF KLS   EEK EVD FN+S++ LIS+V   DVESSK AFV+SASAFEKWTAL GL G 
Sbjct: 181 AFNKLSSSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQ 238
[Close]
BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Match: B9IMX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12970g PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.900e-55
Identity = 140/239 (58.58%), Postives = 173/239 (72.38%), Query Frame = 1 

		  

Query: 3   LAATFLSTANIFPNLSSSSNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDS-- 62
           +A TFLSTA   P LSSS+ SS  +L++     +  C Q+  N    +P CK    +S  
Sbjct: 1   MATTFLSTAK--PFLSSSTPSSLSSLTNRPL--LFSCPQQKCNPRRPLPSCKALSDESLP 60

Query: 63  --SSSTPCVSKRSFALSLSSAFLISLAGKGVPLAEAAPLEDEDDLELLEKVKRDRKKRLE 122
             ++S   ++KRS ++   ++F+ SLA +G   + AA LE +DD ELLEKVKRDRKKRLE
Sbjct: 61  VPAASPIIITKRSLSICFLTSFVFSLASRGSSSSNAAILEADDDEELLEKVKRDRKKRLE 120

Query: 123 RQGAINSSTKEKGYLQDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKL 182
           RQG I+S+ KEKGYLQD+VYKLS+VGQAID+NDL  ASSVLG STDTDW+KKAN AFTKL
Sbjct: 121 RQGVISSANKEKGYLQDLVYKLSKVGQAIDNNDLSTASSVLGGSTDTDWVKKANIAFTKL 180

Query: 183 SLDAEEKEEVDMFNTSISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           S   EEK EVD FN+S+S LIS+V   D+ESSK AFVSSA+AFEKWT LTGL G LKG+
Sbjct: 181 SSSPEEKIEVDTFNSSLSSLISSVTSNDIESSKTAFVSSATAFEKWTTLTGLFGQLKGL 235
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BLAST of Spo01401.1 vs. ExPASy Swiss-Prot
Match: TL16_ARATH (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 6.900e-42
Identity = 113/224 (50.45%), Postives = 148/224 (66.07%), Query Frame = 1 

		  

Query: 21  SNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDSSSSTPCVSKRSFALSLSSAF 80
           S++ +P  S++ SSS     +KN+          +G + + +S+  + KR     LS  F
Sbjct: 8   SSTLNPFFSTTLSSS-----KKNQ-------IAYSGNSKNQTSSSLLWKRR---ELSLGF 67

Query: 81  LISLAGKGVPL-------AEAAPLEDEDDLELLEKVKRDRKKRLERQGAINSSTKEKGYL 140
           + SL   G+         A AA LE +DD ELLEKVK+DRKKR+ERQ  +NS+ KEKGYL
Sbjct: 68  MSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYL 127

Query: 141 QDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDAEEKEEVDMFNT 200
           QD+VYKLS+VGQAI++NDL AA  VLG   DT+W+K  N AFTKLS   EE  EV+ FN+
Sbjct: 128 QDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEENTEVEAFNS 187

Query: 201 SISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           S++ LI++V   D+ESSK+AFVSSA AFEKWT LTGL   LKG+
Sbjct: 188 SLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
[Close]
BLAST of Spo01401.1 vs. ExPASy Swiss-Prot
Match: TL16_SPIOL (Thylakoid lumenal 13.3 kDa protein (Fragment) OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 8.600e-8
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 95  APLEDEDDLELLEKVKRDRKKRLERQGAIN 125
           APLEDEDDLELLEKVKRDRKKRLERQGAIN
Sbjct: 1   APLEDEDDLELLEKVKRDRKKRLERQGAIN 30
[Close]
BLAST of Spo01401.1 vs. TAIR (Arabidopsis)
Match: AT4G02530.1 (chloroplast thylakoid lumen protein)

HSP 1 Score: 172.2 bits (435), Expect = 3.900e-43
Identity = 113/224 (50.45%), Postives = 148/224 (66.07%), Query Frame = 1 

		  

Query: 21  SNSSSPTLSSSSSSSISLCLQKNKNFNLLVPFCKTGETDSSSSTPCVSKRSFALSLSSAF 80
           S++ +P  S++ SSS     +KN+          +G + + +S+  + KR     LS  F
Sbjct: 8   SSTLNPFFSTTLSSS-----KKNQ-------IAYSGNSKNQTSSSLLWKRR---ELSLGF 67

Query: 81  LISLAGKGVPL-------AEAAPLEDEDDLELLEKVKRDRKKRLERQGAINSSTKEKGYL 140
           + SL   G+         A AA LE +DD ELLEKVK+DRKKR+ERQ  +NS+ KEKGYL
Sbjct: 68  MSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYL 127

Query: 141 QDVVYKLSEVGQAIDSNDLKAASSVLGASTDTDWIKKANSAFTKLSLDAEEKEEVDMFNT 200
           QD+VYKLS+VGQAI++NDL AA  VLG   DT+W+K  N AFTKLS   EE  EV+ FN+
Sbjct: 128 QDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEENTEVEAFNS 187

Query: 201 SISKLISTVALKDVESSKVAFVSSASAFEKWTALTGLNGVLKGI 238
           S++ LI++V   D+ESSK+AFVSSA AFEKWT LTGL   LKG+
Sbjct: 188 SLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
The following BLAST results are available for this feature:
BLAST of Spo01401.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902196520|gb|KNA13127.1|9.5e-116100.hypothetical protein SOVF_1195... [more]
gi|731353237|ref|XP_010687957.1|3.6e-8378.6PREDICTED: thylakoid lumenal 1... [more]
gi|802640446|ref|XP_012078816.1|1.8e-5860.8PREDICTED: thylakoid lumenal 1... [more]
gi|449443065|ref|XP_004139301.1|1.9e-5557.7PREDICTED: thylakoid lumenal 1... [more]
gi|224142609|ref|XP_002324647.1|4.2e-5558.5hypothetical protein POPTR_001... [more]
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BLAST of Spo01401.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R2W1_SPIOL6.6e-116100.Uncharacterized protein OS=Spi... [more]
A0A0J8BSF0_BETVU2.5e-8378.6Uncharacterized protein OS=Bet... [more]
A0A067K858_JATCU1.3e-5860.8Uncharacterized protein OS=Jat... [more]
A0A0A0LI29_CUCSA1.3e-5557.7Uncharacterized protein OS=Cuc... [more]
B9IMX7_POPTR2.9e-5558.5Uncharacterized protein OS=Pop... [more]
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BLAST of Spo01401.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TL16_ARATH6.9e-4250.4Thylakoid lumenal 16.5 kDa pro... [more]
TL16_SPIOL8.6e-8100.Thylakoid lumenal 13.3 kDa pro... [more]
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BLAST of Spo01401.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G02530.13.9e-4350.4chloroplast thylakoid lumen pr... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35742FAMILY NOT NAMEDcoord: 1..237
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006223 uracil salvage
biological_process GO:0044206 UMP salvage
biological_process GO:0032502 developmental process
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0046148 pigment biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0072330 monocarboxylic acid biosynthetic process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0098542 defense response to other organism
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005829 cytosol
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031977 thylakoid lumen
molecular_function GO:0005525 GTP binding
molecular_function GO:0004845 uracil phosphoribosyltransferase activity
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression