Spo01491 (gene)

Overview
NameSpo01491
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, putative
LocationSpoScf_01043 : 22073 .. 22699 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGACCGCGGCAGAGATGAGAGAGACAGAGACCGCGACCACCGTGACCGCGGCCGTGAGGAGAGAGAAAGAGACCGTGACCGAGACCGGAGGAGAGAGATAGACGACCGAGATCGCCACCGAGACCGCCGCTCTCCCCACGCCCGCTCCCGCCACGCCCGCTCTCGCTCCCGCTCACCTGACCGTCGGCGCCGGTCAAGGTCAGAGTCCGAATCACGCTCCCGTTCACGGTCTCACTCCGTTGACCGGTCTCGCCGTCACCACCACCAATCACGAAGGAGAGAAAGAGACGACCACGACGACAACGACCGCACTGTTGTCTCCGATTTCGTTGACGGAATCGCCAAGGAGCAGAAGAAGAAGAAATCGGATCGAAGAGACGAGAGAGAGAAGAGTAACAACAATGAAAATGGTAACATTGGAGAGGAAGGTGGTGCTGAAGATGATGAAATTGAAATGATGAAGAAATTAGGGATTCCGGTTGGGTTTGATTCTACGAAAGGAAAGCCAGTTGCTGGTGCTGATGTTAGTGGTGTTAGAGCTGTTACTAAGCGTCAGCCGAGACAGTATATGAATCGTCGAGGGGGCTTTAATCGTCCTTTGCCTGCTGAGCGGAATCGTTAG

mRNA sequence

ATGGGCGACCGCGGCAGAGATGAGAGAGACAGAGACCGCGACCACCGTGACCGCGGCCGTGAGGAGAGAGAAAGAGACCGTGACCGAGACCGGAGGAGAGAGATAGACGACCGAGATCGCCACCGAGACCGCCGCTCTCCCCACGCCCGCTCCCGCCACGCCCGCTCTCGCTCCCGCTCACCTGACCGTCGGCGCCGGTCAAGGTCAGAGTCCGAATCACGCTCCCGTTCACGGTCTCACTCCGTTGACCGGTCTCGCCGTCACCACCACCAATCACGAAGGAGAGAAAGAGACGACCACGACGACAACGACCGCACTGTTGTCTCCGATTTCGTTGACGGAATCGCCAAGGAGCAGAAGAAGAAGAAATCGGATCGAAGAGACGAGAGAGAGAAGAGTAACAACAATGAAAATGGTAACATTGGAGAGGAAGGTGGTGCTGAAGATGATGAAATTGAAATGATGAAGAAATTAGGGATTCCGGTTGGGTTTGATTCTACGAAAGGAAAGCCAGTTGCTGGTGCTGATGTTAGTGGTGTTAGAGCTGTTACTAAGCGTCAGCCGAGACAGTATATGAATCGTCGAGGGGGCTTTAATCGTCCTTTGCCTGCTGAGCGGAATCGTTAG

Coding sequence (CDS)

ATGGGCGACCGCGGCAGAGATGAGAGAGACAGAGACCGCGACCACCGTGACCGCGGCCGTGAGGAGAGAGAAAGAGACCGTGACCGAGACCGGAGGAGAGAGATAGACGACCGAGATCGCCACCGAGACCGCCGCTCTCCCCACGCCCGCTCCCGCCACGCCCGCTCTCGCTCCCGCTCACCTGACCGTCGGCGCCGGTCAAGGTCAGAGTCCGAATCACGCTCCCGTTCACGGTCTCACTCCGTTGACCGGTCTCGCCGTCACCACCACCAATCACGAAGGAGAGAAAGAGACGACCACGACGACAACGACCGCACTGTTGTCTCCGATTTCGTTGACGGAATCGCCAAGGAGCAGAAGAAGAAGAAATCGGATCGAAGAGACGAGAGAGAGAAGAGTAACAACAATGAAAATGGTAACATTGGAGAGGAAGGTGGTGCTGAAGATGATGAAATTGAAATGATGAAGAAATTAGGGATTCCGGTTGGGTTTGATTCTACGAAAGGAAAGCCAGTTGCTGGTGCTGATGTTAGTGGTGTTAGAGCTGTTACTAAGCGTCAGCCGAGACAGTATATGAATCGTCGAGGGGGCTTTAATCGTCCTTTGCCTGCTGAGCGGAATCGTTAG

Protein sequence

MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRSPDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01491.1Spo01491.1mRNA


Homology
[Close]
BLAST of Spo01491.1 vs. NCBI nr
Match: gi|902234516|gb|KNA23479.1| (hypothetical protein SOVF_024450 [Spinacia oleracea])

HSP 1 Score: 360.1 bits (923), Expect = 2.500e-96
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60
           MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS
Sbjct: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60

Query: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK 120
           PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK
Sbjct: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK 120

Query: 121 KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV 180
           KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV
Sbjct: 121 KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV 180

Query: 181 RAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           RAVTKRQPRQYMNRRGGFNRPLPAERNR
Sbjct: 181 RAVTKRQPRQYMNRRGGFNRPLPAERNR 208
[Close]
BLAST of Spo01491.1 vs. NCBI nr
Match: gi|731354238|ref|XP_010688474.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.4 bits (607), Expect = 1.100e-59
Identity = 160/217 (73.73%), Postives = 177/217 (81.57%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60
           MGDRGRDERDRDR+            RDRDRRRE+DDRDRHRDRRS     RHARSRSRS
Sbjct: 1   MGDRGRDERDRDRN------------RDRDRRRELDDRDRHRDRRS-----RHARSRSRS 60

Query: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHH-HQSRRRERDDHDD--------NDRTVVSDF 120
           PDRRRRSRSE+ S SRSRS SVDRSRRHH H SRRRERD++DD        ++R VVSDF
Sbjct: 61  PDRRRRSRSETGSPSRSRSRSVDRSRRHHNHHSRRRERDEYDDGYDYDDKNSERKVVSDF 120

Query: 121 VDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKP 180
           VDGIAKEQKKKK+++ +++++ + N N N GEEGG EDDEIEMMKKLGIPVGFDSTKGKP
Sbjct: 121 VDGIAKEQKKKKNNKGEKKDERDKNSNLN-GEEGG-EDDEIEMMKKLGIPVGFDSTKGKP 180

Query: 181 VAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           V GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAE NR
Sbjct: 181 VPGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAELNR 198
[Close]
BLAST of Spo01491.1 vs. NCBI nr
Match: gi|659107269|ref|XP_008453595.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 5.300e-38
Identity = 133/227 (58.59%), Postives = 159/227 (70.04%), Query Frame = 1 

		  

Query: 3   DRGRD---ERDRDRDHRDRGR-------EERERDRDRDRRREIDDRDRHRDR-RSPHA-- 62
           DR RD   +R+RDRDHR+R R       + RERDRDR+RRR++DDRDR R+R RS  +  
Sbjct: 17  DRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLDDRDRERERGRSKRSHT 76

Query: 63  --RSRHARSRSRSPDRRR-----RSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDD 122
             RSR  RSR+RSPDR R     R+  +  SR R RS S D +R+ H    RR+    D+
Sbjct: 77  PDRSRSRRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDHARKRH----RRDLTADDE 136

Query: 123 NDRT-VVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIP 182
            +R   VSDFVDGIAKEQ K+K+++       +N  +G + EE  A++DEIEMMKKLGIP
Sbjct: 137 KERQKAVSDFVDGIAKEQHKQKNNK-------DNAGSGEVVEEAMADEDEIEMMKKLGIP 196

Query: 183 VGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           VGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 197 VGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232
[Close]
BLAST of Spo01491.1 vs. NCBI nr
Match: gi|449457171|ref|XP_004146322.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 7.700e-37
Identity = 132/227 (58.15%), Postives = 158/227 (69.60%), Query Frame = 1 

		  

Query: 3   DRGRD---ERDRDRDHRDRGR-------EERERDRDRDRRREIDDRDRHRDR-RSPHA-- 62
           DR RD   +R+RDRDHR+R R       + RERDRDR+RRR+ DDRDR R+R RS  +  
Sbjct: 17  DRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSLT 76

Query: 63  --RSRHARSRSRSPDRRR-----RSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDD 122
             RSR  RSR+RSPDR R     R+  +  SR R RS S D +R+ H    RR+    D+
Sbjct: 77  PDRSRSRRSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDHARKRH----RRDLTADDE 136

Query: 123 NDRT-VVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIP 182
            +R   VSDFVDGIAKEQ K+K+++       +N   G + EE  A++DE+EMMKKLGIP
Sbjct: 137 KERQKAVSDFVDGIAKEQHKQKNNK-------DNVGGGEVVEEAMADEDEMEMMKKLGIP 196

Query: 183 VGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           VGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 197 VGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232
[Close]
BLAST of Spo01491.1 vs. NCBI nr
Match: gi|719988406|ref|XP_010252324.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Nelumbo nucifera])

HSP 1 Score: 161.8 bits (408), Expect = 1.300e-36
Identity = 125/217 (57.60%), Postives = 143/217 (65.90%), Query Frame = 1 

		  

Query: 3   DRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRSPD 62
           D+ RD  +RD DH      ER+RDR++D+RR+ +DRDR R+R      SRH RSR+RSP 
Sbjct: 69  DKRRDRENRDHDHDRTKDRERDRDREKDKRRDREDRDRDRER------SRHTRSRTRSPV 128

Query: 63  RRRRSRSESESRSRSRSHSVDRSRRHHHQ---------SRRRERDDHDDNDRTVVSDFVD 122
            R +SRS S SRSRSRS  V RSRRH H            RR+ DD D      VS+FVD
Sbjct: 129 HRLKSRSRSPSRSRSRS--VGRSRRHQHSPSPDSRRKHQHRRDEDDKDQQRAAAVSEFVD 188

Query: 123 GIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAE--DDEIEMMKKLGIPVGFDSTKGKP 182
           GIA+EQ+ K+ D  D            +   G AE   DEIE+M KLGIPVGFDSTKGKP
Sbjct: 189 GIAREQQLKQHDSSDSP----------LATAGDAEIDSDEIELMMKLGIPVGFDSTKGKP 248

Query: 183 VAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           V GADVSGVRAVTKRQPRQYMNRRGGFNRPLP ERNR
Sbjct: 249 VPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPPERNR 267
[Close]
BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RX27_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024450 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.800e-96
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60
           MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS
Sbjct: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60

Query: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK 120
           PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK
Sbjct: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK 120

Query: 121 KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV 180
           KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV
Sbjct: 121 KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV 180

Query: 181 RAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           RAVTKRQPRQYMNRRGGFNRPLPAERNR
Sbjct: 181 RAVTKRQPRQYMNRRGGFNRPLPAERNR 208
[Close]
BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EK21_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g198490 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.700e-60
Identity = 160/217 (73.73%), Postives = 177/217 (81.57%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRS 60
           MGDRGRDERDRDR+            RDRDRRRE+DDRDRHRDRRS     RHARSRSRS
Sbjct: 1   MGDRGRDERDRDRN------------RDRDRRRELDDRDRHRDRRS-----RHARSRSRS 60

Query: 61  PDRRRRSRSESESRSRSRSHSVDRSRRHH-HQSRRRERDDHDD--------NDRTVVSDF 120
           PDRRRRSRSE+ S SRSRS SVDRSRRHH H SRRRERD++DD        ++R VVSDF
Sbjct: 61  PDRRRRSRSETGSPSRSRSRSVDRSRRHHNHHSRRRERDEYDDGYDYDDKNSERKVVSDF 120

Query: 121 VDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKP 180
           VDGIAKEQKKKK+++ +++++ + N N N GEEGG EDDEIEMMKKLGIPVGFDSTKGKP
Sbjct: 121 VDGIAKEQKKKKNNKGEKKDERDKNSNLN-GEEGG-EDDEIEMMKKLGIPVGFDSTKGKP 180

Query: 181 VAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           V GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAE NR
Sbjct: 181 VPGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAELNR 198
[Close]
BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LU61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423230 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.400e-37
Identity = 132/227 (58.15%), Postives = 158/227 (69.60%), Query Frame = 1 

		  

Query: 3   DRGRD---ERDRDRDHRDRGR-------EERERDRDRDRRREIDDRDRHRDR-RSPHA-- 62
           DR RD   +R+RDRDHR+R R       + RERDRDR+RRR+ DDRDR R+R RS  +  
Sbjct: 17  DRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSLT 76

Query: 63  --RSRHARSRSRSPDRRR-----RSRSESESRSRSRSHSVDRSRRHHHQSRRRERDDHDD 122
             RSR  RSR+RSPDR R     R+  +  SR R RS S D +R+ H    RR+    D+
Sbjct: 77  PDRSRSRRSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDHARKRH----RRDLTADDE 136

Query: 123 NDRT-VVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIP 182
            +R   VSDFVDGIAKEQ K+K+++       +N   G + EE  A++DE+EMMKKLGIP
Sbjct: 137 KERQKAVSDFVDGIAKEQHKQKNNK-------DNVGGGEVVEEAMADEDEMEMMKKLGIP 196

Query: 183 VGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           VGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 197 VGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232
[Close]
BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Match: M5XT32_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011504mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.600e-36
Identity = 130/227 (57.27%), Postives = 152/227 (66.96%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDR--------RSPH-ARS 60
           MGDR   ERDRDRD R+R R+   RDRDR+RRR+ DDRDR RDR        R+P   R 
Sbjct: 1   MGDR---ERDRDRD-RERNRD---RDRDRERRRDRDDRDRDRDRDRVRSKRSRTPERTRP 60

Query: 61  RHARSRSRSPDRRRRSRSESESRSRSRSHSVDRSRRHHHQS-----RRRER-----DDHD 120
           RH RSR+RSPDR R SR+ S SRSRS      R R HH++S     R+R+R     +D  
Sbjct: 61  RHTRSRTRSPDRYR-SRTRSVSRSRSPDDRSHRRRHHHNRSPSAEARKRQRREPTAEDER 120

Query: 121 DNDRTVVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIP 180
           +  +  V+DFV+GIAKEQK ++    D             G + G ++DEIEMMKK GIP
Sbjct: 121 ERQKAAVADFVEGIAKEQKTQQKQSSDG------------GGDEGLDEDEIEMMKKFGIP 180

Query: 181 VGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
            GFDSTKGKPV GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAERNR
Sbjct: 181 TGFDSTKGKPVPGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 207
[Close]
BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Match: A0A151SRM9_CAJCA (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cajanus cajan GN=KK1_003741 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.900e-35
Identity = 124/208 (59.62%), Postives = 141/208 (67.79%), Query Frame = 1 

		  

Query: 8   ERDRDRDHRDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHARSRSRSPDRRRRS 67
           +RDRDR+ RDR    R+R+RDR+RRR+ DDRDR RDR     R+R  RSRSRSPDR R  
Sbjct: 3   DRDRDRE-RDR---TRDRERDRERRRDKDDRDRDRDRDRDRDRARSKRSRSRSPDRSRSR 62

Query: 68  RSESES---RSRSRSH----SVDRSRRHHHQSRRRERDDHDDNDRTVVSDFVDGIAKEQK 127
            + S S   RS  R H    S+D  R+ H   RR   D+     +  VSDFVDGI KEQ+
Sbjct: 63  HARSPSPADRSHRRRHHRTPSLDPPRKRH---RRDSADEEHKETKKAVSDFVDGIVKEQQ 122

Query: 128 KKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMKKLGIPVGFDSTKGKPVAGADVSGV 187
           +K+             ENG  GE+ G ED E+EMMK LGIP GFDSTKGKPVAGADVSGV
Sbjct: 123 QKQK------------ENGGAGEDEGNED-EVEMMKMLGIPTGFDSTKGKPVAGADVSGV 182

Query: 188 RAVTKRQPRQYMNRRGGFNRPLPAERNR 209
           RAVTKRQPRQYMNRRGGFNRPLPAERNR
Sbjct: 183 RAVTKRQPRQYMNRRGGFNRPLPAERNR 190
[Close]
BLAST of Spo01491.1 vs. ExPASy Swiss-Prot
Match: SNR27_MOUSE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.300e-9
Identity = 66/159 (41.51%), Postives = 82/159 (51.57%), Query Frame = 1 

		  

Query: 55  RSRSRSPDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERD--------DHDDNDRT 114
           RSRSRSP R RR         RSRS S DR RR   +SR RERD         H    R+
Sbjct: 3   RSRSRSPRRERR---------RSRSTSRDRERRRRERSRSRERDRRRSRSRSPHRRRSRS 62

Query: 115 VVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEG--GAEDDEIEMMKKLGIPVGF 174
                    +  + K++ D   +  K   N+   I EE   G  ++EIEMMK +G    F
Sbjct: 63  PRRHRSTSPSPSRLKERRDEEKKETKEIKNKERQITEEDLEGKTEEEIEMMKLMGF-ASF 122

Query: 175 DSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFNRPL 203
           DSTKGK V G+ +   +    KR+ RQYMNR+GGFNRPL
Sbjct: 123 DSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 151
[Close]
BLAST of Spo01491.1 vs. ExPASy Swiss-Prot
Match: SNR27_HUMAN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.200e-8
Identity = 64/159 (40.25%), Postives = 82/159 (51.57%), Query Frame = 1 

		  

Query: 55  RSRSRSPDRRRRSRSESESRSRSRSHSVDRSRRHHHQSRRRERD--------DHDDNDRT 114
           RSRSRSP R RR         RSRS S +R RR   +SR RERD         H    R+
Sbjct: 3   RSRSRSPRRERR---------RSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRS 62

Query: 115 VVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEG--GAEDDEIEMMKKLGIPVGF 174
                    +  + K++ D   +  K   ++   I EE   G  ++EIEMMK +G    F
Sbjct: 63  PRRHRSTSPSPSRLKERRDEEKKETKETKSKERQITEEDLEGKTEEEIEMMKLMGF-ASF 122

Query: 175 DSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFNRPL 203
           DSTKGK V G+ +   +    KR+ RQYMNR+GGFNRPL
Sbjct: 123 DSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 151
[Close]
BLAST of Spo01491.1 vs. TAIR (Arabidopsis)
Match: AT5G57370.1 (unknown protein)

HSP 1 Score: 141.0 bits (354), Expect = 8.500e-34
Identity = 124/232 (53.45%), Postives = 151/232 (65.09%), Query Frame = 1 

		  

Query: 1   MGDRGRDERDRDRDH-----RDRGREERERDRDRDRRREIDDRDRHRDRRSPHARSRHAR 60
           M +R R ER+RD+D      R RGR++R+RDRDRDR R   DR+R RDR       R+ +
Sbjct: 1   MSERDRRERERDKDREPDRDRRRGRDDRDRDRDRDRER---DRERDRDR-----GLRNKK 60

Query: 61  SRSRSPDRRRRSRS-ESESRSRSRSHSVDRSR-----RHHHQ--------SRRRER---- 120
           SRSR+PD   R+R   S  R RSRS S+DR R     RHH +        SR+R R    
Sbjct: 61  SRSRTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQGSV 120

Query: 121 -DDHDDNDRTVVSDFVDGIAKEQKKKKSDRRDEREKSNNNENGNIGEEGGAEDDEIEMMK 180
            D+ + N + VV+D VD  A    KKK     +++ S+  +NG   +E G + +EIEMMK
Sbjct: 121 DDEKERNRKRVVTDSVDENASTITKKK-----DKQPSDAADNGGGEDEEGMDVNEIEMMK 180

Query: 181 KLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 209
            LGIP GFDSTKGKPVAGADVSG+RAVTKRQPRQYMNRRGGFNRPLPAERNR
Sbjct: 181 MLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219
The following BLAST results are available for this feature:
BLAST of Spo01491.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902234516|gb|KNA23479.1|2.5e-96100.hypothetical protein SOVF_0244... [more]
gi|731354238|ref|XP_010688474.1|1.1e-5973.7PREDICTED: U4/U6.U5 small nucl... [more]
gi|659107269|ref|XP_008453595.1|5.3e-3858.5PREDICTED: U4/U6.U5 small nucl... [more]
gi|449457171|ref|XP_004146322.1|7.7e-3758.1PREDICTED: U4/U6.U5 small nucl... [more]
gi|719988406|ref|XP_010252324.1|1.3e-3657.6PREDICTED: U4/U6.U5 small nucl... [more]
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BLAST of Spo01491.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RX27_SPIOL1.8e-96100.Uncharacterized protein OS=Spi... [more]
A0A0J8EK21_BETVU7.7e-6073.7Uncharacterized protein OS=Bet... [more]
A0A0A0LU61_CUCSA5.4e-3758.1Uncharacterized protein OS=Cuc... [more]
M5XT32_PRUPE1.6e-3657.2Uncharacterized protein OS=Pru... [more]
A0A151SRM9_CAJCA2.9e-3559.6U4/U6.U5 small nuclear ribonuc... [more]
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BLAST of Spo01491.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SNR27_MOUSE2.3e-941.5U4/U6.U5 small nuclear ribonuc... [more]
SNR27_HUMAN1.2e-840.2U4/U6.U5 small nuclear ribonuc... [more]
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BLAST of Spo01491.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G57370.18.5e-3453.4unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013957Domain of unknown function DUF1777PFAMPF08648DUF1777coord: 9..202
score: 1.8
NoneNo IPR availablePANTHERPTHR31077FAMILY NOT NAMEDcoord: 116..208
score: 4.3E-50coord: 3..91
score: 4.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006012 galactose metabolic process
biological_process GO:0009225 nucleotide-sugar metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
cellular_component GO:0005829 cytosol
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003978 UDP-glucose 4-epimerase activity
RNA-Seq Expression