Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAGATATCTAGCCGTAGGTTGTGCACATGTGGTGGGTGGAGGTGACAAACCAAAAAAGCAAAAAGTGTAAAAAAAATCTAACGCAATCAACGGTTTCTAACTACCCAAGTACCCATTTCTTCTTCCTCCTCTATAGCTCTACTCTTCACTGTTTGAACTCCATTTCTCTCTCTGCCCTAAACCTTTCTCCTCTTTTTCCTTCCAATTTTTAAAAATCCCTAAAATGTCAAATTCATCATCCAAAACAATAAACCCTCCTTCAAAACCACCCTTTTCTTCCAAATTCATCCCCAAAATCTCCCCTAAATTATCCTCTTTACCTCTTCCCTTAAAACCCATTTACAAATTCCATCTAAAAATCCAATCTTCACTCTCCCCAGATCCCCAAAACCCCAGAAAACCCCTAAATTTAATCTCAATTTTGACAGCTTTACCTGATTGGGCTGATGCAGTTCAGGAAAAGGGTATGAGAAAAAAGAGGGTTTTGTATAATCATGAAAGTTGGGCAGAACATAGAAGCTCCCTTAGGCATGTAAGACATCTGTTGTCTTCACTTTCTTCAAGGGTGATTGTCTCCCTCCTCCCTCCTGTGCTTTTCTTCACTTCTGTGGCTGTTATTGTTTCTGGGTATAATACTGCTGTGACCTTGGATTTGTTGCCTGAGTTTTTCCCTGTGTTGAGGGCATCTTCCTTGCCTTATCAGCTTACGGCCCCCGCCTTGGCCCTTCTGCTTGTGTTTCGGACCGAGGCCTCGTACTCGAGGTACGTGGAAGGGAGGCAGGCTTGGACTAAGGTCATTGGTGGGGCTACTGAGCTTGCTAGGGAGGTCATTGCTTATGTGGATGATTTCAATGATGGGATTATGAAGAGGAGTCTTTTGCAGTACATTATGGCTTTCCCTATTGCCCTTAAGGTTTGAGTTTTCAGTCAATTTTGGAATTCTAAGTTACAATTGTTTGTGATTTTTTGCCTTCAATTGGTCAGAAAATGATTTTTTTTTGGTTGAATGAGAATTTGTGTGATGAATTGGTGATTTTGTGGTAAGGAGACTAACCTGTTCCTGCTTTATAACAATGCAAGTCAATGCAAGTTACACTATTGCTCTTTATTTAGTGTATGCATATGATACTTAAACTTTATTTAGTCATTTGTCATCCATAATTCTTGAAAGTATGGCTGTATTGCAAAAGTGCTTACAAATTTAATTTAATTTACAAAGTGGAATGTTGTTAATTAACCCTTATCTATGCCTAAACCAAAATTAAAGGAAAGAATATGTGCCAGCAAAACTTTTAAGGTATTTAACAAAAAAAAGTTCAACCCTTCATGCTATGTTCTTGCTGCTTTGCTGTGCAAACTGCTGAGGTATGCTTTGTACTGTTTGTACTTGCCAAAACTTTGAAAAAATTAAAAAGTCCATGCTCCTTGTAATTGATTGGACTTGAATCCGACAGATTTTACTATGGTGGATGCAGCTAATGTTGGATTATGTTATGCTTACTTGATCACTTTAGAAAGATCTTTTTGTGGTGATACTCTATGTTGTATGATTTCTGTGGCATAATAAAAAATATCCGGGGTTCTGCAGTGCCATTTGCTTTCTGACTCCGATGTTAGGCGAGACCTCCAAAGCATACTTGAAGCAGATGATTTAGCAGTAGTTCTCAGTTCAAAGCACCGGCCGCAGTGTATAATACAATTCATATCTCAGAGCCTTCAGTTGTTAAGTCTAGAGAACCAAAAGAGAATCGCATTGGTAAATTTCCCTCTGAATCATGCATCTATTTTCTTGAACTGTGATGAAATAAATTAAGTGGTCTAAACAAAGTAACAGGTTTGTTATATGCTTTGGATGTTGTGGTGGGTGTTTTGATCCACACAACTTAGTTTCTGTTTGATTCAACTGAATTTGACTGAAACTAACTTATCTGAACTTATTATTTTTGATGAAAAGAACTTATTTGCATGTTAAATTGTCTGAAAAGTTTGGCTGGACTGAACTTTTTTTTGCTGAAATAAGTTGAAACAAACAGACCCTTAGTGAAGGTATTTCAAGTCCTTAAAAAAGCATTTGCACAATGCAGGATTCGAAGTTATCCCGTTTCCACGATGGGATTAGTGTTTGTGAACAAATAGTGGGTACACCCATTCCTTTGTCATACACTCGGCTGACCTCAAGGTTCCTTGTTCTTTGGCATCTCACATTACCTGTCATACTATGGGATGATTGCCACTGGATTGTGGTTCCTGCCACTTTTATCAGCGCAGCATCTTTGTTCTGCATAGAAGAGGTATTCCTTATCCCCCGTTTTGAATCACACTGTCAAAGTTTCCTTAATTATCATCTTGTGTATGGTTTATCACGATATTGGGCATCTGTTGTTCGAAACTTTTGTAGGTGGGTGTACTTATTGAAGAGCCCTTCCCTATGCTTGCACTAGATGCACTGTGCAAGGTGCTTTGTACCAACATTCAGGAAGCTATTACAGTCCAGAAGGCAGTTAAAATCCGGGTCAATGCTAAAAAGAAGACCTACCAGTATAACGAGCACTCAACGAATGGTTGGCCAGCGTCACGTGTTGATAAGACTTGATGAAACTTGGCAACATTTGACGAAACTTTGATGAAACTTAAAAAGAAGACCTACCAGTATAACGAGCACTCACGCGTGTTATAATGCAACATCAGAAGATGCAGTGTAAACTGATTTTTCTTTCTCAGGTAATCAACTGAGAGTGTTCTTGAATCTGAAAGGGATGATTATCTCTGTAAATCTACGGTTTGAAGTTTGGACGACTGACCAGAATCCTGTTTGTACATAACTCATAAATATGATCGGTAGACATCTGTATGTATGTAGTTAAAAACAAACATGGCTACCACTTTTTGTAAAATTTTGGCTCTTGATATTCCATATAATTTTATTTAGTTGATTCTGTAAAAACAGTAAATACACTTGAAATTCTGACAAAATCATAACAATTCTCTTCTATGAGAAATAAAGTCATTAAATACTATATAAAGATCAAAAATATCCCTCAAGTAACACAGTGTCTTGTATAATCCTAGTTGATAAGTTCTTCAACCTCTTACTTTGGGTGAGACTCATCATTGTTGAGGAAGAAAGATTGACATCATCC GAAAGATATCTAGCCGTAGGTTGTGCACATGTGGTGGGTGGAGGTGACAAACCAAAAAAGCAAAAAGTGTAAAAAAAATCTAACGCAATCAACGGTTTCTAACTACCCAAGTACCCATTTCTTCTTCCTCCTCTATAGCTCTACTCTTCACTGTTTGAACTCCATTTCTCTCTCTGCCCTAAACCTTTCTCCTCTTTTTCCTTCCAATTTTTAAAAATCCCTAAAATGTCAAATTCATCATCCAAAACAATAAACCCTCCTTCAAAACCACCCTTTTCTTCCAAATTCATCCCCAAAATCTCCCCTAAATTATCCTCTTTACCTCTTCCCTTAAAACCCATTTACAAATTCCATCTAAAAATCCAATCTTCACTCTCCCCAGATCCCCAAAACCCCAGAAAACCCCTAAATTTAATCTCAATTTTGACAGCTTTACCTGATTGGGCTGATGCAGTTCAGGAAAAGGGTATGAGAAAAAAGAGGGTTTTGTATAATCATGAAAGTTGGGCAGAACATAGAAGCTCCCTTAGGCATGTAAGACATCTGTTGTCTTCACTTTCTTCAAGGGTGATTGTCTCCCTCCTCCCTCCTGTGCTTTTCTTCACTTCTGTGGCTGTTATTGTTTCTGGGTATAATACTGCTGTGACCTTGGATTTGTTGCCTGAGTTTTTCCCTGTGTTGAGGGCATCTTCCTTGCCTTATCAGCTTACGGCCCCCGCCTTGGCCCTTCTGCTTGTGTTTCGGACCGAGGCCTCGTACTCGAGGTACGTGGAAGGGAGGCAGGCTTGGACTAAGGTCATTGGTGGGGCTACTGAGCTTGCTAGGGAGGTCATTGCTTATGTGGATGATTTCAATGATGGGATTATGAAGAGGAGTCTTTTGCAGTACATTATGGCTTTCCCTATTGCCCTTAAGTGCCATTTGCTTTCTGACTCCGATGTTAGGCGAGACCTCCAAAGCATACTTGAAGCAGATGATTTAGCAGTAGTTCTCAGTTCAAAGCACCGGCCGCAGTGTATAATACAATTCATATCTCAGAGCCTTCAGTTGTTAAGTCTAGAGAACCAAAAGAGAATCGCATTGGATTCGAAGTTATCCCGTTTCCACGATGGGATTAGTGTTTGTGAACAAATAGTGGGTACACCCATTCCTTTGTCATACACTCGGCTGACCTCAAGGTTCCTTGTTCTTTGGCATCTCACATTACCTGTCATACTATGGGATGATTGCCACTGGATTGTGGTTCCTGCCACTTTTATCAGCGCAGCATCTTTGTTCTGCATAGAAGAGGTGGGTGTACTTATTGAAGAGCCCTTCCCTATGCTTGCACTAGATGCACTGTGCAAGGTGCTTTGTACCAACATTCAGGAAGCTATTACAGTCCAGAAGGCAGTTAAAATCCGGGTCAATGCTAAAAAGAAGACCTACCAGTATAACGAGCACTCAACGAATGGTTGGCCAGCGTCACGTGTTGATAAGACTTGATGAAACTTGGCAACATTTGACGAAACTTTGATGAAACTTAAAAAGAAGACCTACCAGTATAACGAGCACTCACGCGTGTTATAATGCAACATCAGAAGATGCAGTGTAAACTGATTTTTCTTTCTCAGGTAATCAACTGAGAGTGTTCTTGAATCTGAAAGGGATGATTATCTCTGTAAATCTACGGTTTGAAGTTTGGACGACTGACCAGAATCCTGTTTGTACATAACTCATAAATATGATCGGTAGACATCTGTATGTATGTAGTTAAAAACAAACATGGCTACCACTTTTTGTAAAATTTTGGCTCTTGATATTCCATATAATTTTATTTAGTTGATTCTGTAAAAACAGTAAATACACTTGAAATTCTGACAAAATCATAACAATTCTCTTCTATGAGAAATAAAGTCATTAAATACTATATAAAGATCAAAAATATCCCTCAAGTAACACAGTGTCTTGTATAATCCTAGTTGATAAGTTCTTCAACCTCTTACTTTGGGTGAGACTCATCATTGTTGAGGAAGAAAGATTGACATCATCC ATGTCAAATTCATCATCCAAAACAATAAACCCTCCTTCAAAACCACCCTTTTCTTCCAAATTCATCCCCAAAATCTCCCCTAAATTATCCTCTTTACCTCTTCCCTTAAAACCCATTTACAAATTCCATCTAAAAATCCAATCTTCACTCTCCCCAGATCCCCAAAACCCCAGAAAACCCCTAAATTTAATCTCAATTTTGACAGCTTTACCTGATTGGGCTGATGCAGTTCAGGAAAAGGGTATGAGAAAAAAGAGGGTTTTGTATAATCATGAAAGTTGGGCAGAACATAGAAGCTCCCTTAGGCATGTAAGACATCTGTTGTCTTCACTTTCTTCAAGGGTGATTGTCTCCCTCCTCCCTCCTGTGCTTTTCTTCACTTCTGTGGCTGTTATTGTTTCTGGGTATAATACTGCTGTGACCTTGGATTTGTTGCCTGAGTTTTTCCCTGTGTTGAGGGCATCTTCCTTGCCTTATCAGCTTACGGCCCCCGCCTTGGCCCTTCTGCTTGTGTTTCGGACCGAGGCCTCGTACTCGAGGTACGTGGAAGGGAGGCAGGCTTGGACTAAGGTCATTGGTGGGGCTACTGAGCTTGCTAGGGAGGTCATTGCTTATGTGGATGATTTCAATGATGGGATTATGAAGAGGAGTCTTTTGCAGTACATTATGGCTTTCCCTATTGCCCTTAAGTGCCATTTGCTTTCTGACTCCGATGTTAGGCGAGACCTCCAAAGCATACTTGAAGCAGATGATTTAGCAGTAGTTCTCAGTTCAAAGCACCGGCCGCAGTGTATAATACAATTCATATCTCAGAGCCTTCAGTTGTTAAGTCTAGAGAACCAAAAGAGAATCGCATTGGATTCGAAGTTATCCCGTTTCCACGATGGGATTAGTGTTTGTGAACAAATAGTGGGTACACCCATTCCTTTGTCATACACTCGGCTGACCTCAAGGTTCCTTGTTCTTTGGCATCTCACATTACCTGTCATACTATGGGATGATTGCCACTGGATTGTGGTTCCTGCCACTTTTATCAGCGCAGCATCTTTGTTCTGCATAGAAGAGGTGGGTGTACTTATTGAAGAGCCCTTCCCTATGCTTGCACTAGATGCACTGTGCAAGGTGCTTTGTACCAACATTCAGGAAGCTATTACAGTCCAGAAGGCAGTTAAAATCCGGGTCAATGCTAAAAAGAAGACCTACCAGTATAACGAGCACTCAACGAATGGTTGGCCAGCGTCACGTGTTGATAAGACTTGA MSNSSSKTINPPSKPPFSSKFIPKISPKLSSLPLPLKPIYKFHLKIQSSLSPDPQNPRKPLNLISILTALPDWADAVQEKGMRKKRVLYNHESWAEHRSSLRHVRHLLSSLSSRVIVSLLPPVLFFTSVAVIVSGYNTAVTLDLLPEFFPVLRASSLPYQLTAPALALLLVFRTEASYSRYVEGRQAWTKVIGGATELAREVIAYVDDFNDGIMKRSLLQYIMAFPIALKCHLLSDSDVRRDLQSILEADDLAVVLSSKHRPQCIIQFISQSLQLLSLENQKRIALDSKLSRFHDGISVCEQIVGTPIPLSYTRLTSRFLVLWHLTLPVILWDDCHWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDALCKVLCTNIQEAITVQKAVKIRVNAKKKTYQYNEHSTNGWPASRVDKT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01566.1 vs. NCBI nr
Match: gi|902193948|gb|KNA12419.1| (hypothetical protein SOVF_126110 [Spinacia oleracea]) HSP 1 Score: 800.8 bits (2067), Expect = 1.100e-228 Identity = 411/419 (98.09%), Postives = 415/419 (99.05%), Query Frame = 1
BLAST of Spo01566.1 vs. NCBI nr
Match: gi|902217149|gb|KNA17628.1| (hypothetical protein SOVF_078500 [Spinacia oleracea]) HSP 1 Score: 656.4 bits (1692), Expect = 3.400e-185 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1
BLAST of Spo01566.1 vs. NCBI nr
Match: gi|731311686|ref|XP_010670570.1| (PREDICTED: UPF0187 protein At3g61320, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 653.3 bits (1684), Expect = 2.900e-184 Identity = 336/418 (80.38%), Postives = 372/418 (89.00%), Query Frame = 1
BLAST of Spo01566.1 vs. NCBI nr
Match: gi|590722182|ref|XP_007051825.1| (Bestrophin-like protein isoform 1 [Theobroma cacao]) HSP 1 Score: 533.5 bits (1373), Expect = 3.300e-148 Identity = 281/410 (68.54%), Postives = 329/410 (80.24%), Query Frame = 1
BLAST of Spo01566.1 vs. NCBI nr
Match: gi|225454194|ref|XP_002273844.1| (PREDICTED: UPF0187 protein At3g61320, chloroplastic [Vitis vinifera]) HSP 1 Score: 531.9 bits (1369), Expect = 9.700e-148 Identity = 276/411 (67.15%), Postives = 337/411 (82.00%), Query Frame = 1
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYR8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_126110 PE=4 SV=1) HSP 1 Score: 800.8 bits (2067), Expect = 7.800e-229 Identity = 411/419 (98.09%), Postives = 415/419 (99.05%), Query Frame = 1
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDW7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078500 PE=4 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 2.400e-185 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D810_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g004800 PE=4 SV=1) HSP 1 Score: 653.3 bits (1684), Expect = 2.000e-184 Identity = 336/418 (80.38%), Postives = 372/418 (89.00%), Query Frame = 1
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Match: A0A061DUA6_THECC (Bestrophin-like protein isoform 1 OS=Theobroma cacao GN=TCM_005346 PE=4 SV=1) HSP 1 Score: 533.5 bits (1373), Expect = 2.300e-148 Identity = 281/410 (68.54%), Postives = 329/410 (80.24%), Query Frame = 1
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Match: F6I614_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02870 PE=4 SV=1) HSP 1 Score: 531.9 bits (1369), Expect = 6.800e-148 Identity = 276/411 (67.15%), Postives = 337/411 (82.00%), Query Frame = 1
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Match: YU88_ARATH (UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2) HSP 1 Score: 480.3 bits (1235), Expect = 2.100e-134 Identity = 235/349 (67.34%), Postives = 294/349 (84.24%), Query Frame = 1
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Match: YU87_ARATH (UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana GN=At2g45870 PE=2 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 7.700e-129 Identity = 239/404 (59.16%), Postives = 316/404 (78.22%), Query Frame = 1
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Match: Y2987_NOSS1 (UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 4.500e-20 Identity = 68/236 (28.81%), Postives = 119/236 (50.42%), Query Frame = 1
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Match: Y3414_RALSO (UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 3.000e-16 Identity = 76/286 (26.57%), Postives = 130/286 (45.45%), Query Frame = 1
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Match: Y1024_SYNY3 (UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2) HSP 1 Score: 85.5 bits (210), Expect = 1.500e-15 Identity = 78/294 (26.53%), Postives = 135/294 (45.92%), Query Frame = 1
BLAST of Spo01566.1 vs. TAIR (Arabidopsis)
Match: AT3G61320.1 (Bestrophin-like protein) HSP 1 Score: 480.3 bits (1235), Expect = 1.200e-135 Identity = 235/349 (67.34%), Postives = 294/349 (84.24%), Query Frame = 1
BLAST of Spo01566.1 vs. TAIR (Arabidopsis)
Match: AT2G45870.1 (Bestrophin-like protein) HSP 1 Score: 461.8 bits (1187), Expect = 4.400e-130 Identity = 239/404 (59.16%), Postives = 316/404 (78.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01566.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01566.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01566.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01566.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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