Spo01617 (gene)

Overview
NameSpo01617
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionEukaryotic translation initiation factor 1A
Locationchr2 : 50910012 .. 50911852 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACCCACAAAGAAAACCGCCATACACAAGTTCAAATAGGAGTACTAGTCAAAAATAAATCTCACCACTCTTTCTCTACCATTTTCTTAGAGCACTCCCATTAATGAGTAAATTCTCGTGAGATTTTTGGTTTTCCTCACCATTGGGAGTGCTCTAAGGGCACAACCGACCTCACAAGGAATTAATTCACACCGTGGCCTCCACGCAACCTACATAAACCCCCAAATTTCCGAACTTGTTACGGAGTAAATTCCAAGTAATTACTCCTATAAAAGAAAACTCAAGCAGGAGAAGAGAGAGAAAATCCGGTCTCATCTGAATTCAAATCAGAAGAAAAACAAAAACACAAAATCCTTTGTAATCAGAACCGTCCGTTCTAGGGTTTACAGTTAGAGAGAGAAACAGAAGAAAGAGAAAGCGAAGATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGTAAGAACGAAGCTGATGATGAGAAGAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAGTACGCTCAGGTTCTTCGTATGCTCGGTAATGGCCGTTGCGAAGCCATGTGTATTGATAACGTCAAGCGACTTTGCCATATCCGTGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGATATCATCCTCGTCGGTCTCCGTGATTATCAGGTTTGATACTTCTCTTCTCTTCTTCCTCGATTTTCAATTTTCGTTACTTTTTCAATTGATTTGTTTGGCTAGGGTTTGTCGTTGTTGAATTGATTGATAGTTAGCTAGCCTGTGGATTTGAAATTCGATAGGATCTAAGAAAAACAAAATTTGTGTTTGAAACAGATAATCAATTATTGATTTAATTAATCGGTTATTTAGCCAGAATATTTCGCCTTTTTTATGCTTCTAATTAATAATATTTGTTTGAATATTAGGAGTAAAAAATAAGTTTTGACATTAATCTAAACCAAAGACGAAAGCTTTTGCTATTTAAACACGAAATTAGCTGTTTTTGGTGATAATTCATAGTCAATTGGATTGATTAAGTGCTTTTTATTGACGACGTTATTGTTGGTATCAAATCAATCACAAATTCAATATTGACTAATGAGTATTTAACCCAATTCCTGCTGTTAAATGTTGGAGTATGATGTTTCATGTTTGTTCTTGGGTATTAAGTCTCGCTTTGCTGTAATCAATCAATCAGTGATTGAGTACATGAGATTGGATTACTTGTTTGTGCAGTTGAGACTAAACTCCTTTTTTTGATGATGTGTTTAGGATGACAAGGCGGATGTAATCCTTAAGTACATGCCAGATGAAGCTAGGTTGCTCAAGGCTTATGGTGAGTTGCCAGAAAATATCAGGCTTAATGAAGGTATCATTACTGCCATGGATGCGGATGAAGAGGGTGACGGCGAAGAGTACATCGAGTTCGAGGATGAAGATATTGACAAAATATAAGCAATTCAAGTTTTATTTAAATGCACTTTTTACTAATGTCGAACCTTTATTGTCAACTATCAAGTATAAGGTTCTCTTGAGTTTGATTATAAATTGATGCACTAGTCTCTTTACATGCATGGATTACTGTTTCGAGTGGGAATTGTATTTGATATTTACGCATGAGATGGCTCAATAAATACAGTCCATCTTTTGATTATCCGATTTTGTGTGTATCGATAATATATTGTGCTTATCTTCAATCGTTTCAAGCACTTAATTTGCCTTCTTTTGGGATGATGATTAAGATTGTGAGTGAAGTGTCTTGTGCAAATTGTTTTTTGGTTCTAAAAGTTCGGTCCATCTGCAGAGGCTAAAAGTTCAATTAGGGCAAGG

mRNA sequence

AAAAACCCACAAAGAAAACCGCCATACACAAGTTCAAATAGGAGTACTAGTCAAAAATAAATCTCACCACTCTTTCTCTACCATTTTCTTAGAGCACTCCCATTAATGAGTAAATTCTCGTGAGATTTTTGGTTTTCCTCACCATTGGGAGTGCTCTAAGGGCACAACCGACCTCACAAGGAATTAATTCACACCGTGGCCTCCACGCAACCTACATAAACCCCCAAATTTCCGAACTTGTTACGGAGTAAATTCCAAGTAATTACTCCTATAAAAGAAAACTCAAGCAGGAGAAGAGAGAGAAAATCCGGTCTCATCTGAATTCAAATCAGAAGAAAAACAAAAACACAAAATCCTTTGTAATCAGAACCGTCCGTTCTAGGGTTTACAGTTAGAGAGAGAAACAGAAGAAAGAGAAAGCGAAGATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGTAAGAACGAAGCTGATGATGAGAAGAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAGTACGCTCAGGTTCTTCGTATGCTCGGTAATGGCCGTTGCGAAGCCATGTGTATTGATAACGTCAAGCGACTTTGCCATATCCGTGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGATATCATCCTCGTCGGTCTCCGTGATTATCAGGATGACAAGGCGGATGTAATCCTTAAGTACATGCCAGATGAAGCTAGGTTGCTCAAGGCTTATGGTGAGTTGCCAGAAAATATCAGGCTTAATGAAGGTATCATTACTGCCATGGATGCGGATGAAGAGGGTGACGGCGAAGAGTACATCGAGTTCGAGGATGAAGATATTGACAAAATATAAGCAATTCAAGTTTTATTTAAATGCACTTTTTACTAATGTCGAACCTTTATTGTCAACTATCAAGTATAAGGTTCTCTTGAGTTTGATTATAAATTGATGCACTAGTCTCTTTACATGCATGGATTACTGTTTCGAGTGGGAATTGTATTTGATATTTACGCATGAGATGGCTCAATAAATACAGTCCATCTTTTGATTATCCGATTTTGTGTGTATCGATAATATATTGTGCTTATCTTCAATCGTTTCAAGCACTTAATTTGCCTTCTTTTGGGATGATGATTAAGATTGTGAGTGAAGTGTCTTGTGCAAATTGTTTTTTGGTTCTAAAAGTTCGGTCCATCTGCAGAGGCTAAAAGTTCAATTAGGGCAAGG

Coding sequence (CDS)

ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGTAAGAACGAAGCTGATGATGAGAAGAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAGTACGCTCAGGTTCTTCGTATGCTCGGTAATGGCCGTTGCGAAGCCATGTGTATTGATAACGTCAAGCGACTTTGCCATATCCGTGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGATATCATCCTCGTCGGTCTCCGTGATTATCAGGATGACAAGGCGGATGTAATCCTTAAGTACATGCCAGATGAAGCTAGGTTGCTCAAGGCTTATGGTGAGTTGCCAGAAAATATCAGGCTTAATGAAGGTATCATTACTGCCATGGATGCGGATGAAGAGGGTGACGGCGAAGAGTACATCGAGTTCGAGGATGAAGATATTGACAAAATATAA

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGIITAMDADEEGDGEEYIEFEDEDIDKI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01617.1Spo01617.1mRNA


Homology
[Close]
BLAST of Spo01617.1 vs. NCBI nr
Match: gi|902173029|gb|KNA08207.1| (hypothetical protein SOVF_164670 [Spinacia oleracea])

HSP 1 Score: 290.4 bits (742), Expect = 1.700e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
           TAMDADEEGDGEEYIEFEDEDIDKI
Sbjct: 121 TAMDADEEGDGEEYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. NCBI nr
Match: gi|449453559|ref|XP_004144524.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.800e-69
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI+
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             MD D+EG G+ YIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. NCBI nr
Match: gi|702241061|ref|XP_010046096.1| (PREDICTED: eukaryotic translation initiation factor 1A [Eucalyptus grandis])

HSP 1 Score: 268.9 bits (686), Expect = 5.300e-69
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             ++ DEEG G++YIEFEDEDIDKI
Sbjct: 121 GGLEEDEEGPGDDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. NCBI nr
Match: gi|698427668|ref|XP_009788620.1| (PREDICTED: eukaryotic translation initiation factor 1A [Nicotiana sylvestris])

HSP 1 Score: 268.5 bits (685), Expect = 7.000e-69
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             +D +EEG G++YIEFEDEDIDKI
Sbjct: 121 GGLDEEEEGAGDDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. NCBI nr
Match: gi|116779866|gb|ABK21455.1| (unknown [Picea sitchensis])

HSP 1 Score: 268.1 bits (684), Expect = 9.100e-69
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA+CID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN+RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPENVRLNEGIA 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             +D DEEG  ++YIEFEDEDIDKI
Sbjct: 121 GGLDEDEEGGADDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLU1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164670 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.200e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
           TAMDADEEGDGEEYIEFEDEDIDKI
Sbjct: 121 TAMDADEEGDGEEYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K1Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.300e-69
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI+
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             MD D+EG G+ YIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Match: A0A059DE92_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01082 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.700e-69
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             ++ DEEG G++YIEFEDEDIDKI
Sbjct: 121 GGLEEDEEGPGDDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Match: U5D5U4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00059p00147020 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.300e-69
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             +D ++EG G++YIEFEDEDIDKI
Sbjct: 121 AGLDEEDEGAGDDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Match: K4C152_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.300e-69
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPEN RLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             +D ++EG G++YIEFEDEDIDKI
Sbjct: 121 NGLDEEDEGAGDDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 3.600e-65
Identity = 130/146 (89.04%), Postives = 133/146 (91.10%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+N RLNEG I
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEG-I 120

Query: 121 TAMDADEEGD-GEEYIEFEDEDIDKI 146
            A   DEE D   +YIEFEDEDIDKI
Sbjct: 121 GAGGLDEEMDTANDYIEFEDEDIDKI 145
[Close]
BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.400e-64
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+D  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+ +RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 TAMDADEEGDGE-EYIEFEDEDIDKI 146
             +D  EEG+G+ +YI+FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144
[Close]
BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.600e-49
Identity = 107/150 (71.33%), Postives = 119/150 (79.33%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC D VKRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE--- 120

Query: 121 TAMDADEEGDGEEYIEF-----EDEDIDKI 146
              D    GD +E I+F     +DEDID I
Sbjct: 121 --TDTFGPGDDDE-IQFDDIGDDDEDIDDI 144
[Close]
BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.600e-49
Identity = 107/150 (71.33%), Postives = 119/150 (79.33%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC D VKRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE--- 120

Query: 121 TAMDADEEGDGEEYIEF-----EDEDIDKI 146
              D    GD +E I+F     +DEDID I
Sbjct: 121 --TDTFGPGDDDE-IQFDDIGDDDEDIDDI 144
[Close]
BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.600e-49
Identity = 107/150 (71.33%), Postives = 119/150 (79.33%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC D VKRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE--- 120

Query: 121 TAMDADEEGDGEEYIEF-----EDEDIDKI 146
              D    GD +E I+F     +DEDID I
Sbjct: 121 --TDTFGPGDDDE-IQFDDIGDDDEDIDDI 144
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BLAST of Spo01617.1 vs. TAIR (Arabidopsis)
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 257.3 bits (656), Expect = 5.700e-69
Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCID  KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPEN RLNEGI+
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 TAMDADEEGDGEEYIEFEDEDIDKI 146
             ++ D++ + ++Y+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145
[Close]
BLAST of Spo01617.1 vs. TAIR (Arabidopsis)
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 237.3 bits (604), Expect = 6.100e-63
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 1 

		  

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDNVKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCID VKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENIRLNEGII 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPEN RLNEGI+
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 TAMDADEE 129
             +D D++
Sbjct: 121 GDLDDDDD 128
The following BLAST results are available for this feature:
BLAST of Spo01617.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902173029|gb|KNA08207.1|1.7e-75100.hypothetical protein SOVF_1646... [more]
gi|449453559|ref|XP_004144524.1|1.8e-6992.4PREDICTED: eukaryotic translat... [more]
gi|702241061|ref|XP_010046096.1|5.3e-6991.7PREDICTED: eukaryotic translat... [more]
gi|698427668|ref|XP_009788620.1|7.0e-6991.7PREDICTED: eukaryotic translat... [more]
gi|116779866|gb|ABK21455.1|9.1e-6990.3unknown [Picea sitchensis][more]
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BLAST of Spo01617.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLU1_SPIOL1.2e-75100.Uncharacterized protein OS=Spi... [more]
A0A0A0K1Y5_CUCSA1.3e-6992.4Uncharacterized protein OS=Cuc... [more]
A0A059DE92_EUCGR3.7e-6991.7Uncharacterized protein OS=Euc... [more]
U5D5U4_AMBTC6.3e-6991.0Uncharacterized protein OS=Amb... [more]
K4C152_SOLLC6.3e-6991.0Uncharacterized protein OS=Sol... [more]
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BLAST of Spo01617.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IF1A_ONOVI3.6e-6589.0Eukaryotic translation initiat... [more]
IF1A_WHEAT1.4e-6484.2Eukaryotic translation initiat... [more]
IF1AX_PONAB1.6e-4971.3Eukaryotic translation initiat... [more]
IF1AX_HUMAN1.6e-4971.3Eukaryotic translation initiat... [more]
IF1AX_MOUSE1.6e-4971.3Eukaryotic translation initiat... [more]
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BLAST of Spo01617.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G04520.15.7e-6985.5Nucleic acid-binding, OB-fold-... [more]
AT5G35680.36.1e-6389.8Nucleic acid-binding, OB-fold-... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 53..109
score: 5.0
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 16..110
score: 17
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 2..145
score: 1.6E
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
score: 1.8
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMsTIGR00523TIGR00523coord: 14..110
score: 1.3
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..93
score: 2.6
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 22..96
score: 30
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 2..144
score: 9.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..144
score: 1.09
NoneNo IPR availablePANTHERPTHR21668:SF5NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATEDcoord: 2..145
score: 1.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
RNA-Seq Expression