Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAGTTAACCTTATTTATTCATATAAATTTAATTAATGTTCAAGAGAAGTATTAGTGGTACTAACTTTAATGGGGTAAGAAGTCCTAAACGAATAGAAAGAGGGAGGTGGGTTGATTATGTAGTCCATTAGTGGTATATTGGCCTCACAAGAGAGAACATAGTCACTCACCAAATATTGAAGCAATATCTTGACAAAGATGATATAATTAGTTACTAGATTTAAATGCAGGAGATGCATGTTTAACATTTTTCGTAAAACATGTAATGTGAATCATATTATACTAACACAAAATTAAGAGCCTTTTGGTGAACGTCACACTTCTCGATCAAAGTGACTATACGATAGAGACCTGTTAAAAAGATAAACGTCCTTAACTAATTGATTGAGTATTGTGTCCTAGAATTTGAACATTTTTTTAACTATTAGATGATTGGAATAAGTTTATAAAAAGGAGGATCGAACTACGGAAACAAGGAGGTAATTAGAGATCTTAGGTCTTGTTTATTTAAACTTATTTAAACTTATTTTAAGTTATTGCAACAAAATTTAGTTCGGATAAGTTCAACAAATATCATTTTTTTTTTCCAGCCAATGTTATACACATATAAGTTATTTTCAACAAAAAATAAGTTAAGTTAAGTTCATATAAGGTTTTAATAAGTTCAGATAAGTTAATTTCAGTTAACGAAATAGAGCCTTTTAATAAACTATACATATTAAAATCTACTTCCTTTGTTCTTATTTAGTTGCCAGAATTTGATTTTAACTATTTATACACCATCGTTTGACGGAATTTGTTGTGTATGTGTAAGGTAAAATATAGTCATGTGAGATTTTTGTTAAACTCGACTTGATAAATATTTTCAAAATATTTACTTTTAGATTTTTTCACATAGCAAAAAATATTAATAATTTAAAGTGTGCATTGACAAATGTGATTAAATAAATGTGTCAAACAATAAGAACGTAAGAAATATACTTGGATATACTCACTCCGTCCCTTAATACTCGCCCCAGTTTGACCGGCATAAAGTTTTAGGCAATTTAATTGACTTATTAATTTATTAGGTGGTGGATTTTTTTTAATATAGTTAGTGGGATGTGTGTCAAATAAAGGGGTGGGTTGAATTTTTTAATATTTTTTTTAAGGAAGTTGGAATATATGTGGGTCCATGGTAAGTGAAAGAAATGATATAATATTAGTAAAAGTATGCCATTTTTAGAAACGGGGCGAGTATTAAGGGGCGACTTTATAAGAAAAGCGGGAGCGAGTATTAAGGGATGGTAGAGTTGTCAAAACAGGTCATCGGAGGTCGGTCTGGGTCAGGTCATCTCGGGTCTCGGGTCATGATCAGGTCGGGTGTATCGGGTCACTTTATCACTCGGGTTAAGGTCGACTTGGTTTTCTGTCGGGTCATGCCGGGTTTTTTCCCATGTCGGGTACACGTCGGTTCGGGTCGGATCACGTTCAGGTCGGGTTCAATTTCGGGTTTGAATCGAGTTTGTACTGGTTAATCTCGGGTTTGTGGTCAAATTCGGATCGGATAATTTTCGTATCGGTTAAAATTTAGGTCGGGTTACTCTCGGACACGGGTTAAAATCGATTCAATAACTGATTTGGTCATCTCAAAATATTCAAGCGTATAATATTTACTTCACGAAATCGAGTCACTAACAGGTTATGTGGTAAAAATTGGTTTAAGTTTGTTGTCAAGTCGGGTATCGAATTGGGTACGGCTCATTGTTTGGTCGGGTCAGTTCGGTTATCCGTCAACTTTTGGTTTGGTTTCGGGTTCAGGTCCTACAACATCAGGTTAAAATCGGTTATCGATTTTTTCGGGTCGGGTACAGGTCGAGTTTCGGGTTACCTGTTTTACCAAAATTCCGGGTCATGGTCGATTTCGTGTTTGATCAATTCAGGTCGGATTTTCAAGTCGGGTCAATTTTTAACCGCTCTTGAAATGGAGGGAGCAACTTTTAATATCTTTAAAACTTGCAATTGGCAAATGGCAAATGGCAAATGGCAAATGGCAAATGGCAATGAATGAGCCTGAAGCAATATGGAAAGGGAAAAAAGGGTAACTTTAACTGGGCCGTTTTAAGGAAATTTGCTGGGCCGGGCTACTACTGACGTGTTATGTGAATGGTCAAATTCCAAGAAGAGAGGTTAAGGGCACAAATCTGCGCAAAATTTGGGGGTTTAGGGTTCTTCCTTCAAACAACTGTAAACAGAACAACAACAACAGAAATTGAAATTTCGTAGTCGAAAAATCTGAGCAAAAGATGTCGAAGAAGAACAATCTTTCTACTCGCAAGAGACAGCACGATTTCGATATAAGAAGTATTTCTTCTTCTTTCTCATTGTTTCTAATTATATTTCATTTTCGATTAAAGTAGGGTTTTTGCCAATTGAAAATTGCCCTAATTGTTGTTGTATTATTATCAGGAGAAAAGGAGGAGAAGGAGAAAAAGGCGAAGAAGCTTCAGGCAAATAAGAGCAAAATGAAGGTAATTAGTACTTGTATTGATTTGGAATTAGAATTTGAGAAGTAAGTTTTATGTTATTGTTGTGATTTATGGATTCTGCTTGGAATTTGTTATGTGAAGGTTGATGGGGGAGATAAGAAGAAAAAGAAAACAAGTAAATTCTCAGTGAAGAAGAAATTGAAATTGAAGACGAAATTGTCGGCATCTGCTAAAGCTAAAGCTCAACAAGCTATGGAACTTGATGATTAAGGTTTAATTTTTGTTTATTAACAACGTAAGATGTTTTTATTTTAATTGCATTGAGAGGTTTTGTACGGTTGTAGTATGAAATTTCATATAGTTCAATTTTGTTACATCAAAGCTTAAATTTGATGCAAATTAGTTCAATGTGGTTACTTGAAGCTTAAATTTGATGCAAATTAGTTCAATGTGGTTGTTCCCTTTTCTGTTTAATTGTATGATATTTCAATGATATGCTTGTTTGATACTTTGAATGTTGCTGTCAGATTCATGAAAGCGTCTTGGATTGAACTAAAAGCTTTTGCGAATGAAACTGTGGTTGGACTTTTAGGTATAAATAAAGAATTAGACTTAGTGTTCCCTAGACAATACTCACTAAATTTAGAAAAGTGTATGGACTTCTTTATTTTAGGAAAGGCGGT TAAGTTAACCTTATTTATTCATATAAATTTAATTAATGTTCAAGAGAAGTATTAGTGGTACTAACTTTAATGGGGTAAGAAGTCCTAAACGAATAGAAAGAGGGAGGTGGGTTGATTATGTAGTCCATTAGTGGTATATTGGCCTCACAAGAGAGAACATAGTCACTCACCAAATATTGAAGCAATATCTTGACAAAGATGATATAATTAGTTACTAGATTTAAATGCAGGAGATGCATGTTTAACATTTTTCGTAAAACATGTAATGTGAATCATATTATACTAACACAAAATTAAGAGCCTTTTGGTGAACGTCACACTTCTCGATCAAAGTGACTATACGATAGAGACCTGTTAAAAAGATAAACGTCCTTAACTAATTGATTGAGTATTGTGTCCTAGAATTTGAACATTTTTTTAACTATTAGATGATTGGAATAAGTTTATAAAAAGGAGGATCGAACTACGGAAACAAGGAGGTAATTAGAGATCTTAGGTCTTGTTTATTTAAACTTATTTAAACTTATTTTAAGTTATTGCAACAAAATTTAGTTCGGATAAGTTCAACAAATATCATTTTTTTTTTCCAGCCAATGTTATACACATATAAGTTATTTTCAACAAAAAATAAGTTAAGTTAAGTTCATATAAGGTTTTAATAAGTTCAGATAAGTTAATTTCAGTTAACGAAATAGAGCCTTTTAATAAACTATACATATTAAAATCTACTTCCTTTGTTCTTATTTAGTTGCCAGAATTTGATTTTAACTATTTATACACCATCGTTTGACGGAATTTGTTGTGTATGTGTAAGGTAAAATATAGTCATGTGAGATTTTTGTTAAACTCGACTTGATAAATATTTTCAAAATATTTACTTTTAGATTTTTTCACATAGCAAAAAATATTAATAATTTAAAGTGTGCATTGACAAATGTGATTAAATAAATGTGTCAAACAATAAGAACGTAAGAAATATACTTGGATATACTCACTCCGTCCCTTAATACTCGCCCCAGTTTGACCGGCATAAAGTTTTAGGCAATTTAATTGACTTATTAATTTATTAGGTGGTGGATTTTTTTTAATATAGTTAGTGGGATGTGTGTCAAATAAAGGGGTGGGTTGAATTTTTTAATATTTTTTTTAAGGAAGTTGGAATATATGTGGGTCCATGGTAAGTGAAAGAAATGATATAATATTAGTAAAAGTATGCCATTTTTAGAAACGGGGCGAGTATTAAGGGGCGACTTTATAAGAAAAGCGGGAGCGAGTATTAAGGGATGGTAGAGTTGTCAAAACAGGTCATCGGAGGTCGGTCTGGGTCAGGTCATCTCGGGTCTCGGGTCATGATCAGGTCGGGTGTATCGGGTCACTTTATCACTCGGGTTAAGGTCGACTTGGTTTTCTGTCGGGTCATGCCGGGTTTTTTCCCATGTCGGGTACACGTCGGTTCGGGTCGGATCACGTTCAGGTCGGGTTCAATTTCGGGTTTGAATCGAGTTTGTACTGGTTAATCTCGGGTTTGTGGTCAAATTCGGATCGGATAATTTTCGTATCGGTTAAAATTTAGGTCGGGTTACTCTCGGACACGGGTTAAAATCGATTCAATAACTGATTTGGTCATCTCAAAATATTCAAGCGTATAATATTTACTTCACGAAATCGAGTCACTAACAGGTTATGTGGTAAAAATTGGTTTAAGTTTGTTGTCAAGTCGGGTATCGAATTGGGTACGGCTCATTGTTTGGTCGGGTCAGTTCGGTTATCCGTCAACTTTTGGTTTGGTTTCGGGTTCAGGTCCTACAACATCAGGTTAAAATCGGTTATCGATTTTTTCGGGTCGGGTACAGGTCGAGTTTCGGGTTACCTGTTTTACCAAAATTCCGGGTCATGGTCGATTTCGTGTTTGATCAATTCAGGTCGGATTTTCAAGTCGGGTCAATTTTTAACCGCTCTTGAAATGGAGGGAGCAACTTTTAATATCTTTAAAACTTGCAATTGGCAAATGGCAAATGGCAAATGGCAAATGGCAAATGGCAATGAATGAGCCTGAAGCAATATGGAAAGGGAAAAAAGGGTAACTTTAACTGGGCCGTTTTAAGGAAATTTGCTGGGCCGGGCTACTACTGACGTGTTATGTGAATGGTCAAATTCCAAGAAGAGAGGTTAAGGGCACAAATCTGCGCAAAATTTGGGGGTTTAGGGTTCTTCCTTCAAACAACTGTAAACAGAACAACAACAACAGAAATTGAAATTTCGTAGTCGAAAAATCTGAGCAAAAGATGTCGAAGAAGAACAATCTTTCTACTCGCAAGAGACAGCACGATTTCGATATAAGAAGAGAAAAGGAGGAGAAGGAGAAAAAGGCGAAGAAGCTTCAGGCAAATAAGAGCAAAATGAAGGTTGATGGGGGAGATAAGAAGAAAAAGAAAACAAGTAAATTCTCAGTGAAGAAGAAATTGAAATTGAAGACGAAATTGTCGGCATCTGCTAAAGCTAAAGCTCAACAAGCTATGGAACTTGATGATTAAGGTTTAATTTTTGTTTATTAACAACGTAAGATGTTTTTATTTTAATTGCATTGAGAGGTTTTGTACGGTTGTAGTATGAAATTTCATATAGTTCAATTTTGTTACATCAAAGCTTAAATTTGATGCAAATTAGTTCAATGTGGTTACTTGAAGCTTAAATTTGATGCAAATTAGTTCAATGTGGTTGTTCCCTTTTCTGTTTAATTGTATGATATTTCAATGATATGCTTGTTTGATACTTTGAATGTTGCTGTCAGATTCATGAAAGCGTCTTGGATTGAACTAAAAGCTTTTGCGAATGAAACTGTGGTTGGACTTTTAGGTATAAATAAAGAATTAGACTTAGTGTTCCCTAGACAATACTCACTAAATTTAGAAAAGTGTATGGACTTCTTTATTTTAGGAAAGGCGGT ATGTCGAAGAAGAACAATCTTTCTACTCGCAAGAGACAGCACGATTTCGATATAAGAAGAGAAAAGGAGGAGAAGGAGAAAAAGGCGAAGAAGCTTCAGGCAAATAAGAGCAAAATGAAGGTTGATGGGGGAGATAAGAAGAAAAAGAAAACAAGTAAATTCTCAGTGAAGAAGAAATTGAAATTGAAGACGAAATTGTCGGCATCTGCTAAAGCTAAAGCTCAACAAGCTATGGAACTTGATGATTAA MSKKNNLSTRKRQHDFDIRREKEEKEKKAKKLQANKSKMKVDGGDKKKKKTSKFSVKKKLKLKTKLSASAKAKAQQAMELDD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01652.1 vs. NCBI nr
Match: gi|902170703|gb|KNA07886.1| (hypothetical protein SOVF_167750 [Spinacia oleracea]) HSP 1 Score: 136.3 bits (342), Expect = 2.300e-29 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
BLAST of Spo01652.1 vs. NCBI nr
Match: gi|731311700|ref|XP_010670627.1| (PREDICTED: uncharacterized protein LOC104887641 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 111.3 bits (277), Expect = 8.000e-22 Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1
BLAST of Spo01652.1 vs. NCBI nr
Match: gi|729354964|ref|XP_010544723.1| (PREDICTED: uncharacterized protein LOC104817289 [Tarenaya hassleriana]) HSP 1 Score: 92.0 bits (227), Expect = 5.000e-16 Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1
BLAST of Spo01652.1 vs. NCBI nr
Match: gi|586645610|ref|XP_006827669.1| (PREDICTED: uncharacterized protein LOC18423042 [Amborella trichopoda]) HSP 1 Score: 90.9 bits (224), Expect = 1.100e-15 Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1
BLAST of Spo01652.1 vs. NCBI nr
Match: gi|720054460|ref|XP_010273061.1| (PREDICTED: uncharacterized protein LOC104608704 [Nelumbo nucifera]) HSP 1 Score: 87.8 bits (216), Expect = 9.500e-15 Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167750 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 1.600e-29 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D838_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g004850 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 5.600e-22 Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Match: W1NIT4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00009p00254400 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 7.800e-16 Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MSD3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31098 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 8.700e-15 Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Match: M0SN64_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-14 Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1
BLAST of Spo01652.1 vs. TAIR (Arabidopsis)
Match: AT2G45860.1 (unknown protein) HSP 1 Score: 78.2 bits (191), Expect = 2.700e-15 Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01652.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01652.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01652.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo01652.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
|