Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGATTCAGTCTCCAACGGAACCGCCCGATAAGATGATGGCTGATGTCCCACCCGTTGGAATTTCACCAGAGTTGCCTAGGGAGATGCCTTCCTTCAGGGAGGTGGTTGCTTCGTCGACGCAGTGGTTTACGGAGGCGAGGAAAATTGTAACGGCATCGAAGGAATGGGAGGATTGTGAGGAGCTTCCACCAGATAGCAACTTGTCAGTGCAATTCAGTAAACTTACTTTGGATCGGTTACGAAGCCCATGGAGACTTACTCTCATGGGAAAGTGCTTGGGAATCCAAGTACGATCGAGTATTATGGAGGCTAGAGTTCGTGCTATGTGGAGAATTAAAGGTTTAGTGGAGGTGATTGATGTTGGTAGTGGAGTTTTTTTGTTTAAATTTACTCAAGGGGATGATTATGAACGCGCTCTGTTTGGAGGTCCTTGGTTTGTGATGGAGCATTATCTCATGTTATCACCGTGGAAGCCAAATTTTCGGCCGTCAAGGGACGGATTTGATCAAATGTCTGTGTGGATTAGGATTGAGGAGTTACCAATTGAGTATTATGATAAGGAGGCTCTGTTTGCCATTGCCTTGGTGATTGGTAAACCAATTCGTGTTGATTATTCAACGGATAAGATTACTCGGGGTCGTTATGCTAGGGTTTGTGTGGAGATTGATCTCACTAAGCCTTTAATCTCTAAGGTTTGGGTTGGGGGATCATGGCAAGCAATTCAATACGAAAATATTTCTTCTCTGTGTTTTGCGTGTGGAAGGATAGGACATCTGCAGACGGAGTGTTCCGTGGAAAAGTTGGTTTCCTCTTCTGTTAAGGGGAAGGAGAAAATGAATCAGGACGGCGCGTGTGGGGGACAAGAGGCGGTGGTTATCCGAAACGTTGATGCAAACGGTGATCCCTATGCCACTGGAATGGAAGGTTCTGGGACTAAGGTTGACTTTACAAGTCATGATTATGGGCCATGGACTTTGGTGAGTCGTAAGCCCAAGCCACGTGGTCGATTTGGTAATAAAATCACCCCACATTCGAAGATCAATGAGTACAGAAGAGGAATAGGGTCCACAGTAGCTAATGGGCCGCGTTTGGGGGTGGCCCAATCAGGTGAGGGCCCTAAGTTGTCCAAATCCAAGTCTGGTGTTGATTCATCGTTGAATCTAGTTTTGGAAACAGATCAGTTAATTTCTTCAGTTGGAAAAAAAGGGGAGGGAAGATCAGAAGTCGCCATACACGTGGTTCCATCAATAAACCACTTGGTGGAGTCCCAAGATCCCCCCACTCCTCCGTTACTCATCAATATGAATTTAAACCCCACGGTTAACCAAGTTAACACTTCTCCTTCTCTCTCTCATACCCCTTCAGCTTCTTCCCATTCTTCTCAACTTCTTCCTCAAGCTTCTCTGAATAGTTTTCCTAGTAATGGCGGGCAATCAAACTCCGAAATCATCATGCATGCAAGTGAATTCCAGTCCGAGGGGTGCATCCCGGCGGGGGAGGCAAACTTGGGTGGCCAGGGGGCCACGGTTCTTTCAGAGCAGGGGGGTTCCGACGGATGTAATAGAAGTTCCACGGGTGTCGGGGTCGATCTTTCAACCGGAGTTACTTCAACTATTTCCGACTCAGGCGGAGATGAGTCCATGTGTGACGGAGAGAGACACGGGTCGGTCATTCGAGAATCCGGCGGAGGAGGCGCGACGGTTGTTGGCGAATTTACAGAAGCAGGAGCAATTGTACACGGGTCCAATTTCTCGACCTCGTCTGGAATTACCCCGGAATTTCAGCAAGCTTCCTTTGCCAGGAACGGCGCCGGATTTCAATCCCATCACCATTCAGTCTCCGTTAACTCGGGGATTACCAAAAGAGGTTCCCATAATTCCTTTACAATTCGAAACACAAGGGCAAGAAATGGGTCTGTCGGGTCGCCATACAGCACTTTACGAAACGCAACAAGAAGTCGTCGGAGTGCAGATTCAGGGTCGGTACTATCGTCAACTATTGGAGCCGTTGAAGATATTCACGTATGTGACGCCAATTCGGTTGGAGGATCTGGGAATGATGGGGTTGTCTCACCATTGGAGGGATTGGGCGGAGTTCTTTCTCCCCCTGAATGCGGGTCCAAATGA ATGGAGATTCAGTCTCCAACGGAACCGCCCGATAAGATGATGGCTGATGTCCCACCCGTTGGAATTTCACCAGAGTTGCCTAGGGAGATGCCTTCCTTCAGGGAGGTGGTTGCTTCGTCGACGCAGTGGTTTACGGAGGCGAGGAAAATTGTAACGGCATCGAAGGAATGGGAGGATTGTGAGGAGCTTCCACCAGATAGCAACTTGTCAGTGCAATTCAGTAAACTTACTTTGGATCGGTTACGAAGCCCATGGAGACTTACTCTCATGGGAAAGTGCTTGGGAATCCAAGTACGATCGAGTATTATGGAGGCTAGAGTTCGTGCTATGTGGAGAATTAAAGGTTTAGTGGAGGTGATTGATGTTGGTAGTGGAGTTTTTTTGTTTAAATTTACTCAAGGGGATGATTATGAACGCGCTCTGTTTGGAGGTCCTTGGTTTGTGATGGAGCATTATCTCATGTTATCACCGTGGAAGCCAAATTTTCGGCCGTCAAGGGACGGATTTGATCAAATGTCTGTGTGGATTAGGATTGAGGAGTTACCAATTGAGTATTATGATAAGGAGGCTCTGTTTGCCATTGCCTTGGTGATTGGTAAACCAATTCGTGTTGATTATTCAACGGATAAGATTACTCGGGGTCGTTATGCTAGGGTTTGTGTGGAGATTGATCTCACTAAGCCTTTAATCTCTAAGGTTTGGGTTGGGGGATCATGGCAAGCAATTCAATACGAAAATATTTCTTCTCTGTGTTTTGCGTGTGGAAGGATAGGACATCTGCAGACGGAGTGTTCCGTGGAAAAGTTGGTTTCCTCTTCTGTTAAGGGGAAGGAGAAAATGAATCAGGACGGCGCGTGTGGGGGACAAGAGGCGGTGGTTATCCGAAACGTTGATGCAAACGGTGATCCCTATGCCACTGGAATGGAAGGTTCTGGGACTAAGGTTGACTTTACAAGTCATGATTATGGGCCATGGACTTTGGTGAGTCGTAAGCCCAAGCCACGTGGTCGATTTGGTAATAAAATCACCCCACATTCGAAGATCAATGAGTACAGAAGAGGAATAGGGTCCACAGTAGCTAATGGGCCGCGTTTGGGGGTGGCCCAATCAGGTGAGGGCCCTAAGTTGTCCAAATCCAAGTCTGGTGTTGATTCATCGTTGAATCTAGTTTTGGAAACAGATCAGTTAATTTCTTCAGTTGGAAAAAAAGGGGAGGGAAGATCAGAAGTCGCCATACACGTGGTTCCATCAATAAACCACTTGGTGGAGTCCCAAGATCCCCCCACTCCTCCGTTACTCATCAATATGAATTTAAACCCCACGGTTAACCAAGTTAACACTTCTCCTTCTCTCTCTCATACCCCTTCAGCTTCTTCCCATTCTTCTCAACTTCTTCCTCAAGCTTCTCTGAATAGTTTTCCTAGTAATGGCGGGCAATCAAACTCCGAAATCATCATGCATGCAAGTGAATTCCAGTCCGAGGGGTGCATCCCGGCGGGGGAGGCAAACTTGGGTGGCCAGGGGGCCACGGTTCTTTCAGAGCAGGGGGGTTCCGACGGATGTAATAGAAGTTCCACGGGTGTCGGGGTCGATCTTTCAACCGGAGTTACTTCAACTATTTCCGACTCAGGCGGAGATGAGTCCATGTGTGACGGAGAGAGACACGGGTCGGTCATTCGAGAATCCGGCGGAGGAGGCGCGACGGTTGTTGGCGAATTTACAGAAGCAGGAGCAATTGTACACGGGTCCAATTTCTCGACCTCGTCTGGAATTACCCCGGAATTTCAGCAAGCTTCCTTTGCCAGGAACGGCGCCGGATTTCAATCCCATCACCATTCAGTCTCCGTTAACTCGGGGATTACCAAAAGAGGTTCCCATAATTCCTTTACAATTCGAAACACAAGGGCAAGAAATGGGTCTGTCGGGTCGCCATACAGCACTTTACGAAACGCAACAAGAAGTCGTCGGAGTGCAGATTCAGGGTCGGTACTATCGTCAACTATTGGAGCCGTTGAAGATATTCACGTATGTGACGCCAATTCGGTTGGAGGATCTGGGAATGATGGGGTTGTCTCACCATTGGAGGGATTGGGCGGAGTTCTTTCTCCCCCTGAATGCGGGTCCAAATGA ATGGAGATTCAGTCTCCAACGGAACCGCCCGATAAGATGATGGCTGATGTCCCACCCGTTGGAATTTCACCAGAGTTGCCTAGGGAGATGCCTTCCTTCAGGGAGGTGGTTGCTTCGTCGACGCAGTGGTTTACGGAGGCGAGGAAAATTGTAACGGCATCGAAGGAATGGGAGGATTGTGAGGAGCTTCCACCAGATAGCAACTTGTCAGTGCAATTCAGTAAACTTACTTTGGATCGGTTACGAAGCCCATGGAGACTTACTCTCATGGGAAAGTGCTTGGGAATCCAAGTACGATCGAGTATTATGGAGGCTAGAGTTCGTGCTATGTGGAGAATTAAAGGTTTAGTGGAGGTGATTGATGTTGGTAGTGGAGTTTTTTTGTTTAAATTTACTCAAGGGGATGATTATGAACGCGCTCTGTTTGGAGGTCCTTGGTTTGTGATGGAGCATTATCTCATGTTATCACCGTGGAAGCCAAATTTTCGGCCGTCAAGGGACGGATTTGATCAAATGTCTGTGTGGATTAGGATTGAGGAGTTACCAATTGAGTATTATGATAAGGAGGCTCTGTTTGCCATTGCCTTGGTGATTGGTAAACCAATTCGTGTTGATTATTCAACGGATAAGATTACTCGGGGTCGTTATGCTAGGGTTTGTGTGGAGATTGATCTCACTAAGCCTTTAATCTCTAAGGTTTGGGTTGGGGGATCATGGCAAGCAATTCAATACGAAAATATTTCTTCTCTGTGTTTTGCGTGTGGAAGGATAGGACATCTGCAGACGGAGTGTTCCGTGGAAAAGTTGGTTTCCTCTTCTGTTAAGGGGAAGGAGAAAATGAATCAGGACGGCGCGTGTGGGGGACAAGAGGCGGTGGTTATCCGAAACGTTGATGCAAACGGTGATCCCTATGCCACTGGAATGGAAGGTTCTGGGACTAAGGTTGACTTTACAAGTCATGATTATGGGCCATGGACTTTGGTGAGTCGTAAGCCCAAGCCACGTGGTCGATTTGGTAATAAAATCACCCCACATTCGAAGATCAATGAGTACAGAAGAGGAATAGGGTCCACAGTAGCTAATGGGCCGCGTTTGGGGGTGGCCCAATCAGGTGAGGGCCCTAAGTTGTCCAAATCCAAGTCTGGTGTTGATTCATCGTTGAATCTAGTTTTGGAAACAGATCAGTTAATTTCTTCAGTTGGAAAAAAAGGGGAGGGAAGATCAGAAGTCGCCATACACGTGGTTCCATCAATAAACCACTTGGTGGAGTCCCAAGATCCCCCCACTCCTCCGTTACTCATCAATATGAATTTAAACCCCACGGTTAACCAAGTTAACACTTCTCCTTCTCTCTCTCATACCCCTTCAGCTTCTTCCCATTCTTCTCAACTTCTTCCTCAAGCTTCTCTGAATAGTTTTCCTAGTAATGGCGGGCAATCAAACTCCGAAATCATCATGCATGCAAGTGAATTCCAGTCCGAGGGGTGCATCCCGGCGGGGGAGGCAAACTTGGGTGGCCAGGGGGCCACGGTTCTTTCAGAGCAGGGGGGTTCCGACGGATGTAATAGAAGTTCCACGGGTGTCGGGGTCGATCTTTCAACCGGAGTTACTTCAACTATTTCCGACTCAGGCGGAGATGAGTCCATGTGTGACGGAGAGAGACACGGGTCGGTCATTCGAGAATCCGGCGGAGGAGGCGCGACGGTTGTTGGCGAATTTACAGAAGCAGGAGCAATTGTACACGGGTCCAATTTCTCGACCTCGTCTGGAATTACCCCGGAATTTCAGCAAGCTTCCTTTGCCAGGAACGGCGCCGGATTTCAATCCCATCACCATTCAGTCTCCGTTAACTCGGGGATTACCAAAAGAGGTTCCCATAATTCCTTTACAATTCGAAACACAAGGGCAAGAAATGGGTCTGTCGGGTCGCCATACAGCACTTTACGAAACGCAACAAGAAGTCGTCGGAGTGCAGATTCAGGGTCGGTACTATCGTCAACTATTGGAGCCGTTGAAGATATTCACGTATGTGACGCCAATTCGGTTGGAGGATCTGGGAATGATGGGGTTGTCTCACCATTGGAGGGATTGGGCGGAGTTCTTTCTCCCCCTGAATGCGGGTCCAAATGA MEIQSPTEPPDKMMADVPPVGISPELPREMPSFREVVASSTQWFTEARKIVTASKEWEDCEELPPDSNLSVQFSKLTLDRLRSPWRLTLMGKCLGIQVRSSIMEARVRAMWRIKGLVEVIDVGSGVFLFKFTQGDDYERALFGGPWFVMEHYLMLSPWKPNFRPSRDGFDQMSVWIRIEELPIEYYDKEALFAIALVIGKPIRVDYSTDKITRGRYARVCVEIDLTKPLISKVWVGGSWQAIQYENISSLCFACGRIGHLQTECSVEKLVSSSVKGKEKMNQDGACGGQEAVVIRNVDANGDPYATGMEGSGTKVDFTSHDYGPWTLVSRKPKPRGRFGNKITPHSKINEYRRGIGSTVANGPRLGVAQSGEGPKLSKSKSGVDSSLNLVLETDQLISSVGKKGEGRSEVAIHVVPSINHLVESQDPPTPPLLINMNLNPTVNQVNTSPSLSHTPSASSHSSQLLPQASLNSFPSNGGQSNSEIIMHASEFQSEGCIPAGEANLGGQGATVLSEQGGSDGCNRSSTGVGVDLSTGVTSTISDSGGDESMCDGERHGSVIRESGGGGATVVGEFTEAGAIVHGSNFSTSSGITPEFQQASFARNGAGFQSHHHSVSVNSGITKRGSHNSFTIRNTRARNGSVGSPYSTLRNATRSRRSADSGSVLSSTIGAVEDIHVCDANSVGGSGNDGVVSPLEGLGGVLSPPECGSK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01673.1 vs. NCBI nr
Match: gi|731343488|ref|XP_010682918.1| (PREDICTED: uncharacterized protein LOC104897680 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 327.4 bits (838), Expect = 6.200e-86 Identity = 157/320 (49.06%), Postives = 216/320 (67.50%), Query Frame = 1
BLAST of Spo01673.1 vs. NCBI nr
Match: gi|332322101|emb|CCA65996.1| (hypothetical protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.9 bits (803), Expect = 7.100e-82 Identity = 174/397 (43.83%), Postives = 238/397 (59.95%), Query Frame = 1
BLAST of Spo01673.1 vs. NCBI nr
Match: gi|731358295|ref|XP_010690660.1| (PREDICTED: uncharacterized protein LOC104904165 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.0 bits (798), Expect = 2.700e-81 Identity = 152/335 (45.37%), Postives = 209/335 (62.39%), Query Frame = 1
BLAST of Spo01673.1 vs. NCBI nr
Match: gi|731313725|ref|XP_010681547.1| (PREDICTED: uncharacterized protein LOC104896496 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 268.9 bits (686), Expect = 2.600e-68 Identity = 124/214 (57.94%), Postives = 168/214 (78.50%), Query Frame = 1
BLAST of Spo01673.1 vs. NCBI nr
Match: gi|902192767|gb|KNA12110.1| (hypothetical protein SOVF_128880 [Spinacia oleracea]) HSP 1 Score: 258.1 bits (658), Expect = 4.600e-65 Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Match: F4NCG7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.900e-82 Identity = 174/397 (43.83%), Postives = 238/397 (59.95%), Query Frame = 1
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXZ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_128880 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 3.200e-65 Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Match: Q2HX36_IPOBA (Uncharacterized protein OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 7.400e-46 Identity = 112/377 (29.71%), Postives = 182/377 (48.28%), Query Frame = 1
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Match: A0A0F6NGC7_IPOBA (LINE-type retrotransposon LIb DNA OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 1.100e-44 Identity = 119/356 (33.43%), Postives = 186/356 (52.25%), Query Frame = 1
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Match: Q2HX35_IPOBA (Uncharacterized protein OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 4.100e-44 Identity = 107/365 (29.32%), Postives = 176/365 (48.22%), Query Frame = 1
BLAST of Spo01673.1 vs. TAIR (Arabidopsis)
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding) HSP 1 Score: 157.5 bits (397), Expect = 3.000e-38 Identity = 69/208 (33.17%), Postives = 115/208 (55.29%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01673.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01673.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01673.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo01673.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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