Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATTCAGGATTAATACTGCTACTACCAATCTTGGCAAAATCTGTAGTTTAGTCAGAGAAAGAAACTCTGACAAAACTGGAGATGTGTCAAGAAATGAAAAGAGAGAATCTTGAAAGTGTAACCCATCTTTTTTTTTTAACAATATTAATTAATGTTAAGTATTACTCTACTCTAATTATTAATAAATAATCAAAATTACTATTTGCATTTAAAAAACAGGGCCCTCATTTGGTAATTCTCCAACTTTTCTTCTTTCTTTCTTGTATCTTCTTCTACCATTGTTGTTTGCAGACCTCCCATTCTTTGCTTCTATCAACACCACACCTCTTTCTCTCTCTAACTTTTCCTCTCTACAGTCCAGAAAATCCCTGAATTTTAATATTACTGCAAAAAAGAAAAAGAAAAAAAGAGCAACTATGTCTTCTCCAAGCAAAAGAAGAGAAATGGACTTGATGAAACTGTGAACCCTCTAATCTGATTCATTTTTATCTGATTTTTTTGTATCATTATTATTAGATTTATATTTTTCATTATTTTTATGAACTAATTCTATTATGGGCAAGTTTTCTGGATGATTAATTGTTTGATTTTGTGAAAATAGGATGATGAGTGATTACAAAGTGGAAATGATTAATGATGGGATGCAAGAGTTCTATGTTGAATTTCATGGGCCCATTGAAAGTAATTATCTACACTGTTTTTTCTTCTTATTTTCTTTGGTTTTTAATATTCTTTTTAACTTTTCATTTATTGGGTTAATAATTTTCTGGTGTATGAATAAATTGCTTGTTTTTTGTTTGATGAAATTTTGTGGGTATTACTTGTTTTTGAATGATTTTGCCACTTTGACCTTTTTGTAGATCATTGGTATTTTGAGAACCCCCTTTAACAATTTAGCTATACTTAGAATTTGTTCCTTTTTTAGGTGATTACCTTTGAATTTACAAACTGGGATATGATTTACTAGTTTTATTTCAATTTAATAATGTTCTAAGTTTTATGCTTCATATCAATTTGGAGAAATCCCCTGCATTCTCATTAGATCAATAGCTCCTTGTTTAGGTCTTAGATTTGGAGTAGGCCTATCAGTTTGTTATGTGTATGATTTGGAGTAGTACTAGTACCCTATTCCTTTAAATGTTGTTGATATCTTGCAATTTGATGCATAAATTGTGAATTTCGAATCGGATTATTGTTAGGTCCCTATCATGGAGGTGTTTGGAGGATTAGGGTTGAGCTTCCAGATGCTTACCCATACAAATCTCCATCAATAGGCTTTATAAACAAGATATACCATCCCAATGTTGATGAGATGTAAGTTTGGATGTATTGCTCTATTTTCGCATACTTAAATGTCCGATATTTTCAGTTGTTTGTTTGGATAATCTATCTAGAAGTTAACTGTCTTTCATACTGTGTATTTTCAGGTCAGGATCAGTTTGTCTTGATGTGATTAATCAAACTTGGAGTCCAATGTTTGGTAATGCATTCATCTTTGATTGTTGTTTTTATGATCGTTCAATCGTTCATAACTTATTACTGGTTAAGGGAGTTGTTTTTTGATATGTTAATGCCTGTGTTTCCCAGATTTGGTGAATGTTTTTGAGGTGTTCCTCCCACAGCTTCTGTTGTACCCGAACCCTTCAGACCCCCTGAACGGAGACGCTGCTTCTCTAATGATGCGAGACCGAGCTGCATATGAACTTAGAGTTAAAGGTATAAACTGTCATTCCCATTGTTGGTTTTCATTTTACTTCTCTTATGCTTTAAACTTTATGTATAGATAATATTGATTGTCATTCATTTGTAGTACGGAGTAATTTTACTGGTATGACGAGCTTATTGCTTGTCGTTTCAATAGTTTGATATCCGAAAACGTCTCTTTGGTGAGAAAATGGTTCTAGTGTTCACCACATTTGTTGATAATTTGGATGGGAACACTAGAACCATTGTCCCAACTTTTTCACTATACCACGATGTAAATTTTCTTTGAAATGCTTATTATGAATATTATTGATATTACTATATTAGTACGGAGACATTCAAAGCTCTCTTAATCTACTAACTTGCTTATTATTTTAGACACAGTTTGCAATTGAAATGTGGTTTAACATTTAGGGACAGCGGGAGTATTTCTGTTACAGTTAATTGAAGATTTTATATTTTTTCTGCATGTAAAGTGTGTAACGATTTCATGGAAGACTAGTATAATACAAGATCATACACTGGTTTTTACCTTGCATATCTTGGTAATCAATGATTACTAATCATGCTTGCCTTGTAGTGCCACTATTTCTAGAAACATAGATCTAATACTAATGATCATAAGTTGCTGTAATAAGTTGGTTGTCTCATTTCCCCGTCATTGAAATTGCCACTGAATTATTTACACAAATAATGGGACTGGTAGTCGTTTTTGTCCCTTATCAATTGAAAATTGATATCAAACGTACCATATCTATCCATCTCCCTTGTATTTTAGGTCGATGCCTCTTCAAAATTACGGATGGTAGTAATCTACAATCTGTTTGGGAACTGATGAACCATATTACAGAGTAGGAAAACTATTTAAAGTTGTTTTTCTTTCTCGACCTGTGAAAGTAGAAAGATATCATGACATTTGTGGTTGTTGTGAAGTGTGTTTGCACTTGCAGTGCGTTTATTGTACTCTCAAATCGATGATCTAAATGAGTATTCATAAAACAGAATAATGTCATTGACAAAGTCATTAGAGGTCTAAAATGTCCTAATCTTTATTACGATGGATGTTGCATGATTTGTATGTAATTGTCCAGAATACTGTGAGAAGTATGCAAAGCCAGAGGATGCAGGAGCTGTTCCTGAAGAAAAGTCAAGCGATGAAGAACTGAGCGAGGATGAATATGCTTCAAGTGATGAAGCAATGGTGGGTGAAGCAGACCCCTAGTTGCACTTGCAGTTGCAGTTGCAATTTCTCATTCCACTCAATTTACTGTAATATGTACATTATCACGTAAAGTAGGTCTGGTTGAATCAATGAATCCCCAACACTAAAATTAGTCTGTTGGGAATTATTTGTCGGGGGGGGTGACCGACTGTCCCCAAGTTCCTTTCATTTGGTTAATCCGTGTCATTGTAAATATATGTACCTTTTTTCTATTTATGCTCAATTGTGTACTTGTTCAGGGTCTCGTTTGCTGATAGCATACTGTTTCAGTTTAAACTTCTCCCTTTCAGATTCAACATGTTTCGCGAACTCAATCTATTACGGAGT GATTCAGGATTAATACTGCTACTACCAATCTTGGCAAAATCTGTAGTTTAGTCAGAGAAAGAAACTCTGACAAAACTGGAGATGTGTCAAGAAATGAAAAGAGAGAATCTTGAAAGTGTAACCCATCTTTTTTTTTTAACAATATTAATTAATGTTAAGTATTACTCTACTCTAATTATTAATAAATAATCAAAATTACTATTTGCATTTAAAAAACAGGGCCCTCATTTGGTAATTCTCCAACTTTTCTTCTTTCTTTCTTGTATCTTCTTCTACCATTGTTGTTTGCAGACCTCCCATTCTTTGCTTCTATCAACACCACACCTCTTTCTCTCTCTAACTTTTCCTCTCTACAGTCCAGAAAATCCCTGAATTTTAATATTACTGCAAAAAAGAAAAAGAAAAAAAGAGCAACTATGTCTTCTCCAAGCAAAAGAAGAGAAATGGACTTGATGAAACTGATGATGAGTGATTACAAAGTGGAAATGATTAATGATGGGATGCAAGAGTTCTATGTTGAATTTCATGGGCCCATTGAAAGTCCCTATCATGGAGGTGTTTGGAGGATTAGGGTTGAGCTTCCAGATGCTTACCCATACAAATCTCCATCAATAGGCTTTATAAACAAGATATACCATCCCAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTGATTAATCAAACTTGGAGTCCAATGTTTGATTTGGTGAATGTTTTTGAGGTGTTCCTCCCACAGCTTCTGTTGTACCCGAACCCTTCAGACCCCCTGAACGGAGACGCTGCTTCTCTAATGATGCGAGACCGAGCTGCATATGAACTTAGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGAGGATGCAGGAGCTGTTCCTGAAGAAAAGTCAAGCGATGAAGAACTGAGCGAGGATGAATATGCTTCAAGTGATGAAGCAATGGTGGGTGAAGCAGACCCCTAGTTGCACTTGCAGTTGCAGTTGCAATTTCTCATTCCACTCAATTTACTGTAATATGTACATTATCACGTAAAGTAGGTCTGGTTGAATCAATGAATCCCCAACACTAAAATTAGTCTGTTGGGAATTATTTGTCGGGGGGGGTGACCGACTGTCCCCAAGTTCCTTTCATTTGGTTAATCCGTGTCATTGTAAATATATGTACCTTTTTTCTATTTATGCTCAATTGTGTACTTGTTCAGGGTCTCGTTTGCTGATAGCATACTGTTTCAGTTTAAACTTCTCCCTTTCAGATTCAACATGTTTCGCGAACTCAATCTATTACGGAGT ATGTCTTCTCCAAGCAAAAGAAGAGAAATGGACTTGATGAAACTGATGATGAGTGATTACAAAGTGGAAATGATTAATGATGGGATGCAAGAGTTCTATGTTGAATTTCATGGGCCCATTGAAAGTCCCTATCATGGAGGTGTTTGGAGGATTAGGGTTGAGCTTCCAGATGCTTACCCATACAAATCTCCATCAATAGGCTTTATAAACAAGATATACCATCCCAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTGATTAATCAAACTTGGAGTCCAATGTTTGATTTGGTGAATGTTTTTGAGGTGTTCCTCCCACAGCTTCTGTTGTACCCGAACCCTTCAGACCCCCTGAACGGAGACGCTGCTTCTCTAATGATGCGAGACCGAGCTGCATATGAACTTAGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGAGGATGCAGGAGCTGTTCCTGAAGAAAAGTCAAGCGATGAAGAACTGAGCGAGGATGAATATGCTTCAAGTGATGAAGCAATGGTGGGTGAAGCAGACCCCTAG MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFHGPIESPYHGGVWRIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGDAASLMMRDRAAYELRVKEYCEKYAKPEDAGAVPEEKSSDEELSEDEYASSDEAMVGEADP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01674.1 vs. NCBI nr
Match: gi|902184987|gb|KNA10413.1| (hypothetical protein SOVF_144610 [Spinacia oleracea]) HSP 1 Score: 370.9 bits (951), Expect = 1.300e-99 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
BLAST of Spo01674.1 vs. NCBI nr
Match: gi|731311573|ref|XP_010670105.1| (PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 356.7 bits (914), Expect = 2.400e-95 Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1
BLAST of Spo01674.1 vs. NCBI nr
Match: gi|697147893|ref|XP_009628118.1| (PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 345.5 bits (885), Expect = 5.600e-92 Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 1
BLAST of Spo01674.1 vs. NCBI nr
Match: gi|225426200|ref|XP_002279927.1| (PREDICTED: ubiquitin-conjugating enzyme E2 4 isoform X1 [Vitis vinifera]) HSP 1 Score: 344.4 bits (882), Expect = 1.300e-91 Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = 1
BLAST of Spo01674.1 vs. NCBI nr
Match: gi|719998060|ref|XP_010255296.1| (PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa isoform X1 [Nelumbo nucifera]) HSP 1 Score: 343.6 bits (880), Expect = 2.100e-91 Identity = 167/183 (91.26%), Postives = 176/183 (96.17%), Query Frame = 1
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUL9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_144610 PE=3 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 8.700e-100 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3T1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g004410 PE=3 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 1.700e-95 Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Match: A5AU32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00070 PE=3 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 8.800e-92 Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = 1
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H5P6_SOLCH (Putative ubiquitin-conjugating enzyme E2-23 kDa-like OS=Solanum chacoense PE=3 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.000e-91 Identity = 167/183 (91.26%), Postives = 172/183 (93.99%), Query Frame = 1
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Match: A5B1R0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02280 PE=3 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.000e-91 Identity = 168/184 (91.30%), Postives = 175/184 (95.11%), Query Frame = 1
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 2.000e-81 Identity = 149/184 (80.98%), Postives = 164/184 (89.13%), Query Frame = 1
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2) HSP 1 Score: 302.0 bits (772), Expect = 4.500e-81 Identity = 152/190 (80.00%), Postives = 165/190 (86.84%), Query Frame = 1
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2) HSP 1 Score: 301.2 bits (770), Expect = 7.600e-81 Identity = 153/188 (81.38%), Postives = 163/188 (86.70%), Query Frame = 1
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2) HSP 1 Score: 280.4 bits (716), Expect = 1.400e-74 Identity = 133/183 (72.68%), Postives = 156/183 (85.25%), Query Frame = 1
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 3.600e-62 Identity = 108/175 (61.71%), Postives = 140/175 (80.00%), Query Frame = 1
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4) HSP 1 Score: 302.0 bits (772), Expect = 2.500e-82 Identity = 152/190 (80.00%), Postives = 165/190 (86.84%), Query Frame = 1
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5) HSP 1 Score: 301.2 bits (770), Expect = 4.300e-82 Identity = 153/188 (81.38%), Postives = 163/188 (86.70%), Query Frame = 1
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6) HSP 1 Score: 280.4 bits (716), Expect = 7.900e-76 Identity = 133/183 (72.68%), Postives = 156/183 (85.25%), Query Frame = 1
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Match: AT5G41700.4 (ubiquitin conjugating enzyme 8) HSP 1 Score: 102.4 bits (254), Expect = 2.900e-22 Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 1
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11) HSP 1 Score: 102.1 bits (253), Expect = 3.800e-22 Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01674.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01674.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01674.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01674.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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