Spo01684 (gene)

Overview
NameSpo01684
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING finger family protein
Locationchr2 : 50356380 .. 50356901 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCCCAGTTGGATACACAGAAGTATTCATCCCAACCCTCTTCATCCACACTCTCACCTTACTTACCGTCATCCGTAAAATCCTCTTTAACCTTTTCAATTACATGGGCATGCCCGACTTCCTCGAACCGGGTCCTGCAACCATCGAACCACCGCCTGCCGCCCCCCGAATAACCACCACTCCGCCGTTATCCGCCATCCTAACCCGGGAACTCCTCCCACTGGTACACGTGTCAAAGGAGCAAGAAGAGAGCAGAGAAAGCTGTGCAGTTTGCTTGTATGAATTTAGCAATGGAGAAGAGATCAGATGGTTATCCAACTGTAACCACATTTTTCACAAGGATTGTGTTGACCGTTGGATTGACCTTGATCATCGTACTTGCCCTCTTTGCCGTACGCCGTTCCTTCTTCATGATTTGCTTGATCAGTTTAATCAACGCCTCTTATTAGCTGCTGATTCTTCCGATCTTCTTCAGTACGTTGATCATTATAACTACACTGAATTTGCTCCTCTTTAA

mRNA sequence

ATGGGTTTCCCAGTTGGATACACAGAAGTATTCATCCCAACCCTCTTCATCCACACTCTCACCTTACTTACCGTCATCCGTAAAATCCTCTTTAACCTTTTCAATTACATGGGCATGCCCGACTTCCTCGAACCGGGTCCTGCAACCATCGAACCACCGCCTGCCGCCCCCCGAATAACCACCACTCCGCCGTTATCCGCCATCCTAACCCGGGAACTCCTCCCACTGGTACACGTGTCAAAGGAGCAAGAAGAGAGCAGAGAAAGCTGTGCAGTTTGCTTGTATGAATTTAGCAATGGAGAAGAGATCAGATGGTTATCCAACTGTAACCACATTTTTCACAAGGATTGTGTTGACCGTTGGATTGACCTTGATCATCGTACTTGCCCTCTTTGCCGTACGCCGTTCCTTCTTCATGATTTGCTTGATCAGTTTAATCAACGCCTCTTATTAGCTGCTGATTCTTCCGATCTTCTTCAGTACGTTGATCATTATAACTACACTGAATTTGCTCCTCTTTAA

Coding sequence (CDS)

ATGGGTTTCCCAGTTGGATACACAGAAGTATTCATCCCAACCCTCTTCATCCACACTCTCACCTTACTTACCGTCATCCGTAAAATCCTCTTTAACCTTTTCAATTACATGGGCATGCCCGACTTCCTCGAACCGGGTCCTGCAACCATCGAACCACCGCCTGCCGCCCCCCGAATAACCACCACTCCGCCGTTATCCGCCATCCTAACCCGGGAACTCCTCCCACTGGTACACGTGTCAAAGGAGCAAGAAGAGAGCAGAGAAAGCTGTGCAGTTTGCTTGTATGAATTTAGCAATGGAGAAGAGATCAGATGGTTATCCAACTGTAACCACATTTTTCACAAGGATTGTGTTGACCGTTGGATTGACCTTGATCATCGTACTTGCCCTCTTTGCCGTACGCCGTTCCTTCTTCATGATTTGCTTGATCAGTTTAATCAACGCCTCTTATTAGCTGCTGATTCTTCCGATCTTCTTCAGTACGTTGATCATTATAACTACACTGAATTTGCTCCTCTTTAA

Protein sequence

MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRITTTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01684.1Spo01684.1mRNA


Homology
[Close]
BLAST of Spo01684.1 vs. NCBI nr
Match: gi|902224610|gb|KNA19834.1| (hypothetical protein SOVF_057860 [Spinacia oleracea])

HSP 1 Score: 359.0 bits (920), Expect = 4.700e-96
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT
Sbjct: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60

Query: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120
           TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR
Sbjct: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120

Query: 121 WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 174
           WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL
Sbjct: 121 WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 173
[Close]
BLAST of Spo01684.1 vs. NCBI nr
Match: gi|870869686|gb|KMT20431.1| (hypothetical protein BVRB_1g004250 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 276.2 bits (705), Expect = 4.000e-71
Identity = 133/174 (76.44%), Postives = 151/174 (86.78%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEP-PPAAPRI 60
           MGFPVGYTEVFIPTLFIHTLT  T++RKI+F  F+Y GM +FLEPGP T++P P   P  
Sbjct: 1   MGFPVGYTEVFIPTLFIHTLTFFTILRKIIFTFFHYFGMSEFLEPGPTTLDPNPTRIPIN 60

Query: 61  TTTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVD 120
            T+PPLSAI+TRELLP+V VSKEQEE RE+CAVCLYEF +GEEIRWL NC HIFHKDC+D
Sbjct: 61  PTSPPLSAIVTRELLPIVRVSKEQEE-RENCAVCLYEFCSGEEIRWLGNCKHIFHKDCLD 120

Query: 121 RWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 174
           RW+DLDHRTCPLCRTPFLLHDLLD+FNQR LLAADS DLLQYVDH+NYT F+ +
Sbjct: 121 RWMDLDHRTCPLCRTPFLLHDLLDEFNQR-LLAADSCDLLQYVDHFNYTGFSSI 172
[Close]
BLAST of Spo01684.1 vs. NCBI nr
Match: gi|703162027|ref|XP_010112947.1| (E3 ubiquitin-protein ligase RHA1B [Morus notabilis])

HSP 1 Score: 181.0 bits (458), Expect = 1.700e-42
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPG---PATIEPPPAAP 60
           MGFPVGYTEVF P LF+HTL+LL  IR ++F+LF+++G+ DFLE     P +  PP  +P
Sbjct: 1   MGFPVGYTEVFFPNLFLHTLSLLGFIRNLIFSLFHFLGLSDFLETDVVWPQSSSPPAQSP 60

Query: 61  RITTTPPLSAILTRELLPLVHVSKEQE-----ESRESCAVCLYEFSNGEEIRWLSNCNHI 120
                PP+SA+L RELLP++  S          S ESCAVCLYEF   EEIRWL+NC HI
Sbjct: 61  E---NPPVSALLIRELLPVIKFSDLDSVAGAGNSPESCAVCLYEFDGEEEIRWLTNCRHI 120

Query: 121 FHKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSD 158
           FH+ C+DRW+D D +TCPLCRTPF+  ++ D+FNQRL  A+  +D
Sbjct: 121 FHRACLDRWMDHDQKTCPLCRTPFVPDEMKDEFNQRLWAASGVAD 162
[Close]
BLAST of Spo01684.1 vs. NCBI nr
Match: gi|590721897|ref|XP_007051746.1| (Zinc finger protein, putative [Theobroma cacao])

HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42
Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGYTEVF+P LF+HTL+ L  IR ++F LFNY+G+ DFLE    T+ P        
Sbjct: 1   MGFPVGYTEVFLPKLFVHTLSFLGFIRSLIFALFNYLGLSDFLETD--TVWPENPTRTTP 60

Query: 61  TTPPLSAILTRELLPLVHVSK--EQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCV 120
             PP+SA+L RE+LP++   +     +  ESCAVCLYEF  GEEIRWL NC H+FH+ C+
Sbjct: 61  ENPPVSALLIREILPVIKFEELVVVGDPPESCAVCLYEFEGGEEIRWLRNCRHVFHRACL 120

Query: 121 DRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSD 158
           DRW+D D +TCPLCRTPF+  +L D+FNQRL  A+   D
Sbjct: 121 DRWMDHDQKTCPLCRTPFVPDELQDEFNQRLWAASGVGD 157
[Close]
BLAST of Spo01684.1 vs. NCBI nr
Match: gi|661887649|emb|CDP08780.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 176.0 bits (445), Expect = 5.600e-41
Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATI--EPPPAAPR 60
           MGFPVGYTEVF+P +FI  L++L  IR +LF++F ++G+ DFLEP       E P   P 
Sbjct: 1   MGFPVGYTEVFLPKIFIQALSILGFIRSVLFSIFRFLGLSDFLEPAEGYYFQENPAQMP- 60

Query: 61  ITTTPPLSAILTRELLPLVHVSK-----EQEESRESCAVCLYEFSNGEEIRWLSNCNHIF 120
              TPP+SAIL RELLP+V  S        E   +SCAVCL EF  GEEIRWL NC HIF
Sbjct: 61  --LTPPISAILIRELLPVVKFSDLVAGAGGEPPEKSCAVCLSEFEGGEEIRWLKNCKHIF 120

Query: 121 HKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYN 167
           H+ C+DRW+D D +TCPLCRTPF+  DL D+FNQRL  A+ +       D Y+
Sbjct: 121 HRSCLDRWMDHDQKTCPLCRTPFVPRDLEDEFNQRLWAASSAFGSSSTHDFYD 170
[Close]
BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLN8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057860 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.300e-96
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT
Sbjct: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60

Query: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120
           TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR
Sbjct: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120

Query: 121 WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 174
           WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL
Sbjct: 121 WIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 173
[Close]
BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FXP3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g004250 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.800e-71
Identity = 133/174 (76.44%), Postives = 151/174 (86.78%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEP-PPAAPRI 60
           MGFPVGYTEVFIPTLFIHTLT  T++RKI+F  F+Y GM +FLEPGP T++P P   P  
Sbjct: 1   MGFPVGYTEVFIPTLFIHTLTFFTILRKIIFTFFHYFGMSEFLEPGPTTLDPNPTRIPIN 60

Query: 61  TTTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVD 120
            T+PPLSAI+TRELLP+V VSKEQEE RE+CAVCLYEF +GEEIRWL NC HIFHKDC+D
Sbjct: 61  PTSPPLSAIVTRELLPIVRVSKEQEE-RENCAVCLYEFCSGEEIRWLGNCKHIFHKDCLD 120

Query: 121 RWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYNYTEFAPL 174
           RW+DLDHRTCPLCRTPFLLHDLLD+FNQR LLAADS DLLQYVDH+NYT F+ +
Sbjct: 121 RWMDLDHRTCPLCRTPFLLHDLLDEFNQR-LLAADSCDLLQYVDHFNYTGFSSI 172
[Close]
BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Match: W9SMG3_9ROSA (E3 ubiquitin-protein ligase RHA1B OS=Morus notabilis GN=L484_021468 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.200e-42
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPG---PATIEPPPAAP 60
           MGFPVGYTEVF P LF+HTL+LL  IR ++F+LF+++G+ DFLE     P +  PP  +P
Sbjct: 1   MGFPVGYTEVFFPNLFLHTLSLLGFIRNLIFSLFHFLGLSDFLETDVVWPQSSSPPAQSP 60

Query: 61  RITTTPPLSAILTRELLPLVHVSKEQE-----ESRESCAVCLYEFSNGEEIRWLSNCNHI 120
                PP+SA+L RELLP++  S          S ESCAVCLYEF   EEIRWL+NC HI
Sbjct: 61  E---NPPVSALLIRELLPVIKFSDLDSVAGAGNSPESCAVCLYEFDGEEEIRWLTNCRHI 120

Query: 121 FHKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSD 158
           FH+ C+DRW+D D +TCPLCRTPF+  ++ D+FNQRL  A+  +D
Sbjct: 121 FHRACLDRWMDHDQKTCPLCRTPFVPDEMKDEFNQRLWAASGVAD 162
[Close]
BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Match: A0A061E0V2_THECC (Zinc finger protein, putative OS=Theobroma cacao GN=TCM_005292 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.500e-42
Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGYTEVF+P LF+HTL+ L  IR ++F LFNY+G+ DFLE    T+ P        
Sbjct: 1   MGFPVGYTEVFLPKLFVHTLSFLGFIRSLIFALFNYLGLSDFLETD--TVWPENPTRTTP 60

Query: 61  TTPPLSAILTRELLPLVHVSK--EQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCV 120
             PP+SA+L RE+LP++   +     +  ESCAVCLYEF  GEEIRWL NC H+FH+ C+
Sbjct: 61  ENPPVSALLIREILPVIKFEELVVVGDPPESCAVCLYEFEGGEEIRWLRNCRHVFHRACL 120

Query: 121 DRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSD 158
           DRW+D D +TCPLCRTPF+  +L D+FNQRL  A+   D
Sbjct: 121 DRWMDHDQKTCPLCRTPFVPDELQDEFNQRLWAASGVGD 157
[Close]
BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Match: A0A068UJS8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027875001 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.900e-41
Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATI--EPPPAAPR 60
           MGFPVGYTEVF+P +FI  L++L  IR +LF++F ++G+ DFLEP       E P   P 
Sbjct: 1   MGFPVGYTEVFLPKIFIQALSILGFIRSVLFSIFRFLGLSDFLEPAEGYYFQENPAQMP- 60

Query: 61  ITTTPPLSAILTRELLPLVHVSK-----EQEESRESCAVCLYEFSNGEEIRWLSNCNHIF 120
              TPP+SAIL RELLP+V  S        E   +SCAVCL EF  GEEIRWL NC HIF
Sbjct: 61  --LTPPISAILIRELLPVVKFSDLVAGAGGEPPEKSCAVCLSEFEGGEEIRWLKNCKHIF 120

Query: 121 HKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSDLLQYVDHYN 167
           H+ C+DRW+D D +TCPLCRTPF+  DL D+FNQRL  A+ +       D Y+
Sbjct: 121 HRSCLDRWMDHDQKTCPLCRTPFVPRDLEDEFNQRLWAASSAFGSSSTHDFYD 170
[Close]
BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.600e-17
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MG P  + E+ IP   + TL ++   R ++  L  Y+G+P FL+    +   P      T
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALST 60

Query: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120
                SA L  EL+P+V  S    +  + C VCL +F + ++IR L  C H+FH  C+DR
Sbjct: 61  -----SATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 121 WI-DLDHRTCPLCRTPFL 138
           WI D +  TCP+CR  FL
Sbjct: 121 WIVDCNKITCPICRNRFL 133
[Close]
BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.000e-15
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1 

		  

Query: 1   MGFPVGY-TEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRI 60
           MG P  + TE+ IP+  +  L ++   R I+  L  Y+G+P FL+    +      AP +
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETS------APDL 60

Query: 61  TTTP-PLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCV 120
           T      SA L  EL+P+V  S    +  + C VCL +F + +++R L  C H+FH  C+
Sbjct: 61  TRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCL 120

Query: 121 DRWI-DLDHRTCPLCRTPFL 138
           DRWI D +   CP+CR  FL
Sbjct: 121 DRWIVDYNKMKCPVCRHRFL 134
[Close]
BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-10
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1 

		  

Query: 90  CAVCLYEFSNGEEIRWLSNCNHIFHKDCVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQR- 149
           CAVCL EF   +++R L  C+H FH DC+D W+ L H TCPLCR+  LL DL    + R 
Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSS-LLSDLSSHQDPRS 193

Query: 150 --LLLAADSSD 158
             LL+   +SD
Sbjct: 194 SFLLVLESASD 202
[Close]
BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Match: ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.100e-10
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 1 

		  

Query: 81  KEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDRWIDLDHRTCPLCRT 135
           +E+E+  + C+VCL EF + E++R + NC+H+FH DC+D W+  ++  CPLCRT
Sbjct: 129 EEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQ-NNANCPLCRT 181
[Close]
BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.700e-10
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 

		  

Query: 77  VHVSKEQEESRE--SCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDRWIDLDHRTCPLCR 134
           V + KE + ++E   CAVCL EFS  +++R L NC+H FH DC+D W+ L + TCPLCR
Sbjct: 129 VFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186
[Close]
BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 165.6 bits (418), Expect = 2.700e-41
Identity = 81/161 (50.31%), Postives = 111/161 (68.94%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGYTEVF+P LF+ TL++L  IR I+F++F ++G+ DFLE      +      RI 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 61  TT-PPLSAILTRELLPLV---HVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKD 120
            T  P SA+L RE+LP++    ++   E+  E+CAVCLYEF   +EIRWL NC HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 121 CVDRWIDLDHRTCPLCRTPFLLHDLLDQFNQRLLLAADSSD 158
           C+DRW+D D +TCPLCRTPF+  ++ ++FNQRL  A+   D
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVHD 161
[Close]
BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Match: AT1G63840.1 (RING/U-box superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.300e-35
Identity = 78/162 (48.15%), Postives = 105/162 (64.81%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MGFPVGY+E+ +P +F + L+ L +IRK++  +F  +G+PDFLEP P +   P   P +T
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120
             P  +AIL  E+LP+V  S       E CAVCLY+F N +EIR L+NC HIFH+ C+DR
Sbjct: 61  K-PDSAAILAGEMLPVVRFSDINRPESECCAVCLYDFENDDEIRRLTNCRHIFHRGCLDR 120

Query: 121 W-IDLDHRTCPLCRTPFLLHDLLDQFNQRL--LLAADSSDLL 160
           W +  +  TCPLCRT F+   L  +FNQRL    +A SS LL
Sbjct: 121 WMMGYNQMTCPLCRTQFIPDHLQLEFNQRLWSQSSAVSSQLL 161
[Close]
BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.600e-30
Identity = 72/165 (43.64%), Postives = 103/165 (62.42%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPAT-----IEPP-- 60
           MG+PVGYTE+ +P +F+H L+LL +IR ++   F  +G+PDFLE  P +     +EPP  
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 61  -PAAPRITTTP---PLSAILTRELLPLVHVSKEQE----ESRESCAVCLYEFSNGEEIRW 120
             AA     +    P++A L  E+LP++  S+          + CAVCL+EF N +EIR 
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 121 LSNCNHIFHKDCVDRW-IDLDHRTCPLCRTPFLLHDLLDQFNQRL 150
           L+NC HIFH+ C+DRW +  +  TCPLCRTPF+  +L   FNQR+
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVAFNQRV 165
[Close]
BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Match: AT4G11360.1 (RING-H2 finger A1B)

HSP 1 Score: 89.0 bits (219), Expect = 3.200e-18
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 1 

		  

Query: 1   MGFPVGYTEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRIT 60
           MG P  + E+ IP   + TL ++   R ++  L  Y+G+P FL+    +   P      T
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALST 60

Query: 61  TTPPLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCVDR 120
                SA L  EL+P+V  S    +  + C VCL +F + ++IR L  C H+FH  C+DR
Sbjct: 61  -----SATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 121 WI-DLDHRTCPLCRTPFL 138
           WI D +  TCP+CR  FL
Sbjct: 121 WIVDCNKITCPICRNRFL 133
[Close]
BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Match: AT4G11370.1 (RING-H2 finger A1A)

HSP 1 Score: 81.6 bits (200), Expect = 5.100e-16
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1 

		  

Query: 1   MGFPVGY-TEVFIPTLFIHTLTLLTVIRKILFNLFNYMGMPDFLEPGPATIEPPPAAPRI 60
           MG P  + TE+ IP+  +  L ++   R I+  L  Y+G+P FL+    +      AP +
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETS------APDL 60

Query: 61  TTTP-PLSAILTRELLPLVHVSKEQEESRESCAVCLYEFSNGEEIRWLSNCNHIFHKDCV 120
           T      SA L  EL+P+V  S    +  + C VCL +F + +++R L  C H+FH  C+
Sbjct: 61  TRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCL 120

Query: 121 DRWI-DLDHRTCPLCRTPFL 138
           DRWI D +   CP+CR  FL
Sbjct: 121 DRWIVDYNKMKCPVCRHRFL 134
The following BLAST results are available for this feature:
BLAST of Spo01684.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902224610|gb|KNA19834.1|4.7e-96100.hypothetical protein SOVF_0578... [more]
gi|870869686|gb|KMT20431.1|4.0e-7176.4hypothetical protein BVRB_1g00... [more]
gi|703162027|ref|XP_010112947.1|1.7e-4254.5E3 ubiquitin-protein ligase RH... [more]
gi|590721897|ref|XP_007051746.1|5.1e-4254.7Zinc finger protein, putative ... [more]
gi|661887649|emb|CDP08780.1|5.6e-4153.1unnamed protein product [Coffe... [more]
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BLAST of Spo01684.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RLN8_SPIOL3.3e-96100.Uncharacterized protein OS=Spi... [more]
A0A0J8FXP3_BETVU2.8e-7176.4Uncharacterized protein OS=Bet... [more]
W9SMG3_9ROSA1.2e-4254.5E3 ubiquitin-protein ligase RH... [more]
A0A061E0V2_THECC3.5e-4254.7Zinc finger protein, putative ... [more]
A0A068UJS8_COFCA3.9e-4153.1Uncharacterized protein OS=Cof... [more]
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BLAST of Spo01684.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RHA1B_ARATH5.6e-1736.2E3 ubiquitin-protein ligase RH... [more]
RHA1A_ARATH9.0e-1535.7Probable E3 ubiquitin-protein ... [more]
ATL13_ARATH2.3e-1047.8RING-H2 finger protein ATL13 O... [more]
ATL16_ARATH5.1e-1046.3RING-H2 finger protein ATL16 O... [more]
ATL47_ARATH8.7e-1050.8RING-H2 finger protein ATL47 O... [more]
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BLAST of Spo01684.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G61460.12.7e-4150.3brassinosteroid-responsive RIN... [more]
AT1G63840.11.3e-3548.1RING/U-box superfamily protein[more]
AT5G41400.11.6e-3043.6RING/U-box superfamily protein[more]
AT4G11360.13.2e-1836.2RING-H2 finger A1B[more]
AT4G11370.15.1e-1635.7RING-H2 finger A1A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 89..133
score: 5.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 90..132
score: 9.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 90..133
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 85..136
score: 1.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 72..158
score: 3.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 74..139
score: 1.28

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0010200 response to chitin
cellular_component GO:0005623 cell
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo066970.67Barchart | Table
Spo071950.66Barchart | Table
Spo247450.65Barchart | Table