Spo01712 (gene)

Overview
NameSpo01712
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionrRNA-processing protein PIN domain protein
Locationchr2 : 50773926 .. 50776545 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAGACGGAGGGTGTACTCCATATAGGCCTAGGTCTGAAGCTCGAAACTTGTCCTCTCTCGCTCCATCTCTGTTCTCGTGCTTCGTATTAAAGTAAATAAAAAAAAAAGTAAAAAAAAAAAAATCAAGGTTGTCAATTGTCATAGTTGCAAGCAGCCAAGCACCGCCACCGTTGAAGTTGTGTTAAAGTGTTTGGCAAGTGACAAGCATCTCTCTCCCTTTCTCATCGCTTCTCCATTCTCCATCAATTAGACAGGGTTTACTGGTTTAGGGTTTATCGCCATGGGAAGATCTAAGAAAGCTCCCAAATTTGCTGTCAGGAAGAAGCTTGTCACTTCCAAAACCCTTAAACAGTACTTACTCTTTTCTCTCCATCTCTCTTCTCTTGTCTTTCGTAAATTGATTAAGCATTATCCGCTAATTAATTTTATTTCTTCAAATCCAGGCACAAGCAAGAGGTGTTAAACCCTAAAAAGAAGGACCTTGAAGCCGCCAATCTCCCTAGAAATGTGTAAGTTTCCTTATTTCTGCAATTCGTTTATTGTTAACTTTTATAATTATTGGGCAAAAGAAATTGATCCTAATTTGGTTCAATTCGTTATTTTTGGGGTTATGTGTGTTCTTCAGGCCTAATGTTTCATCCGCCCTGTTCTTCAAGTATAATACCGCCTTGGGACCTCCTTACCGGGTTATCGTCGATACCAATTTCATCAATTTTTCCATCCAGAATAAAGTGAGAACCTCAAATTATAGTTTTATATGTTTCTTTGATGTAGAATATAGTACTGCTTTCTGTCGGATTGATTATTTAAGCTTGAAGTATGCTTTTTTTTCTTGGCTGAATTAGTTGATTACAGGAAACTGCTTCCCAGTGATTAGGTTTTGTAAACATTGTGTAATGCAATTTTCACCTGGTGGCTTTTGGTTTTATGTCCTGTGCAGTTGGATTTAGAGAAAGCAATGATGGACTGCTTGTATGCGAAATGTGAGTATTGTTGTGCAATTTTCACCAGACATTGTATATTCAATACTTTCTGATGTGTTCACTTCAATTTTTTCGAACAATCAGTTCTTTTATGTTAATATATTAGAAATCCAACTCTTCTTTTTGATGACTGAAGGTACTCCATGCATTACGGATTGTGTTATGGCCGAACTCGAGAAGCTCGGTCAAAAATATCGTGTAGCGCTGAGGTACATTCTTCGTGCTTGTATTCTACTCTGTATATATTGATTGATGTAGAAAGACTTGCTAGGTTATTTCAGAAGACACTTGTCATATTCTTTTACCTACCTTTTTGTAACAAATATGATTATTTCCACATGAACTATTAGATTTTATTAATGCCTTCTCCAGCGGTTGATGTTGGTTCATCTTTGGAAATAATCTAATAAAGTTTAATCGATATCTCCAATGATATATGATCCATCACCAATCTAATCCCGTCTGTACTTGCAGGATTGCAAAAGATCCTCGGTTTGACAGACTCCCTTGTACCCATAGAGGAACATATGCTGATGACTGCATTGTTGACAGGGTTAATCAGGTATGTTTTACAGCCTGATGATTAACTTCCCATTACTTTTACTCTGGCAATTTCAAAATAAAGAATTCGCTGAAGATCCAATATCCCCTTCAAAGAGCTTCAGTAAATTTACATTTATCTTTTTTTCTTTCTTTGAGACTGGGAATGGGATAATATCTTGAGGCTTAAATATTATAAAAGAATTTTGGTGCTTCAAAAAGAAATAGGATAGCATGGTGATCCCTTACATTGTGGTAAAGATGGTAGCTGTAAATTTGAATTTGTTGAACCAATGATCAAGAGTTTCTCAACACATTTCTACTAACTTTAAAGTTCAAATTGTGGTATTCTTGTTTGGATGATAGTGTATTGAAAGTGTAGTTTACCTCTGCAAGTATTCAATTGCTGCAGGGGACTGACAGAGCTAACAGACCATCCCTGTTTTCTTTTCTCTATATCCCAAATCTCCATTCCTTAATCCATTTTTAAATATGCAATTCTGTTTAACAAAAGACTTATCATATGATTTACTTTGTTTAACAGCATAAATGCTACATTGTTGCCACATGTGATCGTGATTTGAAACGCAGGATTAGAAAGGTACTTTTCTTTTTTAAATCCTGAGCAGTGAACTTTTAATCATTGTGATCATCTTGAATTTTGAGTGTTAAAAATGTTAATCAATTGTGTTGTTGCTTTGAACCCTGAAAACAATTGGGGAGCAGATCCCTGGTGTGCCGATTATGTACATCACACAGCACAAATATTCCATTGAGCGACTGCCTGAAGCTACAATGGGGGGAGGTATGCTAAACATACAGATTAATCATTTTCTATTCCCGTTTACAATTTTTGTAATTTTTATAATGAAATTTTGTTCTCCATATCTGATGTGCTTATGTATTCTCATGCAGCGCCGAGATACTAATGATCTTGCAATGCTGTTGTTGGAAAGACATTCATCTTATCTATTCTAGGTTTTACTTCTGGTGTTGAGAGTTTCTGTACTTTAGGTGACTACTGGACTACTGGTCAATGGACTTGCCTGGAAGATGAAGATTATCTATATCTTGTTTGTGACCGTAGGGACTAG

mRNA sequence

AAAGAGACGGAGGGTGTACTCCATATAGGCCTAGGTCTGAAGCTCGAAACTTGTCCTCTCTCGCTCCATCTCTGTTCTCGTGCTTCGTATTAAAGTAAATAAAAAAAAAAGTAAAAAAAAAAAAATCAAGGTTGTCAATTGTCATAGTTGCAAGCAGCCAAGCACCGCCACCGTTGAAGTTGTGTTAAAGTGTTTGGCAAGTGACAAGCATCTCTCTCCCTTTCTCATCGCTTCTCCATTCTCCATCAATTAGACAGGGTTTACTGGTTTAGGGTTTATCGCCATGGGAAGATCTAAGAAAGCTCCCAAATTTGCTGTCAGGAAGAAGCTTGTCACTTCCAAAACCCTTAAACAGCACAAGCAAGAGGTGTTAAACCCTAAAAAGAAGGACCTTGAAGCCGCCAATCTCCCTAGAAATGTGCCTAATGTTTCATCCGCCCTGTTCTTCAAGTATAATACCGCCTTGGGACCTCCTTACCGGGTTATCGTCGATACCAATTTCATCAATTTTTCCATCCAGAATAAATTGGATTTAGAGAAAGCAATGATGGACTGCTTGTATGCGAAATGTACTCCATGCATTACGGATTGTGTTATGGCCGAACTCGAGAAGCTCGGTCAAAAATATCGTGTAGCGCTGAGGATTGCAAAAGATCCTCGGTTTGACAGACTCCCTTGTACCCATAGAGGAACATATGCTGATGACTGCATTGTTGACAGGGTTAATCAGCATAAATGCTACATTGTTGCCACATGTGATCGTGATTTGAAACGCAGGATTAGAAAGATCCCTGGTGTGCCGATTATGTACATCACACAGCACAAATATTCCATTGAGCGACTGCCTGAAGCTACAATGGGGGGAGGTTTTACTTCTGGTGTTGAGAGTTTCTGTACTTTAGGTGACTACTGGACTACTGGTCAATGGACTTGCCTGGAAGATGAAGATTATCTATATCTTGTTTGTGACCGTAGGGACTAG

Coding sequence (CDS)

ATGGGAAGATCTAAGAAAGCTCCCAAATTTGCTGTCAGGAAGAAGCTTGTCACTTCCAAAACCCTTAAACAGCACAAGCAAGAGGTGTTAAACCCTAAAAAGAAGGACCTTGAAGCCGCCAATCTCCCTAGAAATGTGCCTAATGTTTCATCCGCCCTGTTCTTCAAGTATAATACCGCCTTGGGACCTCCTTACCGGGTTATCGTCGATACCAATTTCATCAATTTTTCCATCCAGAATAAATTGGATTTAGAGAAAGCAATGATGGACTGCTTGTATGCGAAATGTACTCCATGCATTACGGATTGTGTTATGGCCGAACTCGAGAAGCTCGGTCAAAAATATCGTGTAGCGCTGAGGATTGCAAAAGATCCTCGGTTTGACAGACTCCCTTGTACCCATAGAGGAACATATGCTGATGACTGCATTGTTGACAGGGTTAATCAGCATAAATGCTACATTGTTGCCACATGTGATCGTGATTTGAAACGCAGGATTAGAAAGATCCCTGGTGTGCCGATTATGTACATCACACAGCACAAATATTCCATTGAGCGACTGCCTGAAGCTACAATGGGGGGAGGTTTTACTTCTGGTGTTGAGAGTTTCTGTACTTTAGGTGACTACTGGACTACTGGTCAATGGACTTGCCTGGAAGATGAAGATTATCTATATCTTGTTTGTGACCGTAGGGACTAG

Protein sequence

MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTALGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQHKYSIERLPEATMGGGFTSGVESFCTLGDYWTTGQWTCLEDEDYLYLVCDRRD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01712.1Spo01712.1mRNA


Homology
[Close]
BLAST of Spo01712.1 vs. NCBI nr
Match: gi|902174605|gb|KNA08440.1| (hypothetical protein SOVF_162460 [Spinacia oleracea])

HSP 1 Score: 398.7 bits (1023), Expect = 7.100e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA
Sbjct: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH
Sbjct: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEATMGG
Sbjct: 181 KYSIERLPEATMGG 194
[Close]
BLAST of Spo01712.1 vs. NCBI nr
Match: gi|731311455|ref|XP_010669629.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 374.8 bits (961), Expect = 1.100e-100
Identity = 179/194 (92.27%), Postives = 188/194 (96.91%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK PKFAV+KKLVTSKTLKQHKQEVLNPKK+DLEA NLPRNVP VS+ALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVKKKLVTSKTLKQHKQEVLNPKKRDLEAENLPRNVPYVSAALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRV+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPCTH+GTYADDCIV RV QHKCY+VATCDRDLKRRIRKIPGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVARVTQHKCYLVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. NCBI nr
Match: gi|719969884|ref|XP_010269741.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Nelumbo nucifera])

HSP 1 Score: 370.5 bits (950), Expect = 2.100e-99
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KKAPKFAV KKLV SK +KQHK+EVLNPKKKDLE   LPRNVPNV SALFFKYNTA
Sbjct: 1   MGRAKKAPKFAVMKKLVNSKMIKQHKEEVLNPKKKDLEKEKLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRV+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPC+H+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRKIPGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCSHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. NCBI nr
Match: gi|223547871|gb|EEF49363.1| (Protein C14orf111, putative [Ricinus communis])

HSP 1 Score: 364.8 bits (935), Expect = 1.100e-97
Identity = 172/195 (88.21%), Postives = 183/195 (93.85%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK PKFA  KK++TSK +K +K+EVLNPKKKDL    LPRNVP VSSAL+FKYNTA
Sbjct: 1   MGRAKKGPKFAAMKKIITSKAIKHYKEEVLNPKKKDLSKDKLPRNVPQVSSALYFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRV+VDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPC H+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRK+PGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCIHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGGG 196
           KYSIERLPEATMGGG
Sbjct: 181 KYSIERLPEATMGGG 195
[Close]
BLAST of Spo01712.1 vs. NCBI nr
Match: gi|694995011|ref|XP_009410821.1| (PREDICTED: rRNA-processing protein FCF1 homolog isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 364.8 bits (935), Expect = 1.100e-97
Identity = 174/194 (89.69%), Postives = 186/194 (95.88%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK  KFAV KK+V+SKTLK++K+E+LNPKKKDLE  NLPRNVP+VSSALFFKYNTA
Sbjct: 1   MGRAKKTRKFAVMKKIVSSKTLKKYKEEILNPKKKDLEKENLPRNVPSVSSALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPY VIVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYMVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPCTH+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMD8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_162460 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 5.000e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA
Sbjct: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH
Sbjct: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEATMGG
Sbjct: 181 KYSIERLPEATMGG 194
[Close]
BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2J4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g003790 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 7.700e-101
Identity = 179/194 (92.27%), Postives = 188/194 (96.91%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK PKFAV+KKLVTSKTLKQHKQEVLNPKK+DLEA NLPRNVP VS+ALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVKKKLVTSKTLKQHKQEVLNPKKRDLEAENLPRNVPYVSAALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRV+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPCTH+GTYADDCIV RV QHKCY+VATCDRDLKRRIRKIPGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVARVTQHKCYLVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Match: B9RH01_RICCO (Protein C14orf111, putative OS=Ricinus communis GN=RCOM_1445560 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 7.900e-98
Identity = 172/195 (88.21%), Postives = 183/195 (93.85%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK PKFA  KK++TSK +K +K+EVLNPKKKDL    LPRNVP VSSAL+FKYNTA
Sbjct: 1   MGRAKKGPKFAAMKKIITSKAIKHYKEEVLNPKKKDLSKDKLPRNVPQVSSALYFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRV+VDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPC H+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRK+PGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCIHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGGG 196
           KYSIERLPEATMGGG
Sbjct: 181 KYSIERLPEATMGGG 195
[Close]
BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Match: M0RWC3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 7.900e-98
Identity = 174/194 (89.69%), Postives = 186/194 (95.88%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK  KFAV KK+V+SKTLK++K+E+LNPKKKDLE  NLPRNVP+VSSALFFKYNTA
Sbjct: 1   MGRAKKTRKFAVMKKIVSSKTLKKYKEEILNPKKKDLEKENLPRNVPSVSSALFFKYNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPY VIVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYMVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPCTH+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Match: A0A068UJP6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027811001 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.800e-97
Identity = 170/194 (87.63%), Postives = 184/194 (94.85%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MG++KKAPKFAV KK+VTSK +KQHK+EVLNP KKDL    LPRNVPNVSSALFFK+NTA
Sbjct: 1   MGKAKKAPKFAVMKKMVTSKAIKQHKEEVLNPNKKDLTKEKLPRNVPNVSSALFFKHNTA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPY ++VDTNFINFSIQNKLDL+K MMDCLYAKCTPC+TDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYMILVDTNFINFSIQNKLDLQKGMMDCLYAKCTPCVTDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPCTH+GTYADDCIVDRV QHKCYIVATCDRDLKRRIRK+PGVPIMYITQH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITQH 180

Query: 181 KYSIERLPEATMGG 195
           KYSIERLPEAT+GG
Sbjct: 181 KYSIERLPEATIGG 194
[Close]
BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Match: FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.300e-73
Identity = 130/191 (68.06%), Postives = 159/191 (83.25%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLE--AANLPRNVPNVSSALFFKYN 60
           MG+ KK  K+A  K++++ +  +  +++ L PKKK+ +  +A   R VP   S LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 120
           T LGPPY ++VDTNFINFSI+ KLDL ++MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTH+GTYADDC+V RV QHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 QHKYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191
[Close]
BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Match: FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.300e-73
Identity = 130/191 (68.06%), Postives = 159/191 (83.25%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLE--AANLPRNVPNVSSALFFKYN 60
           MG+ KK  K+A  K++++ +  +  +++ L PKKK+ +  +A   R VP   S LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 120
           T LGPPY ++VDTNFINFSI+ KLDL ++MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTH+GTYADDC+V RV QHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 QHKYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191
[Close]
BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Match: FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.300e-73
Identity = 130/191 (68.06%), Postives = 159/191 (83.25%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLE--AANLPRNVPNVSSALFFKYN 60
           MG+ KK  K+A  K++++ +  +  +++ L PKKK+ +  +A   R VP   S LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 120
           T LGPPY ++VDTNFINFSI+ KLDL ++MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTH+GTYADDC+V RV QHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 QHKYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191
[Close]
BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Match: FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 275.0 bits (702), Expect = 7.400e-73
Identity = 129/191 (67.54%), Postives = 159/191 (83.25%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLE--AANLPRNVPNVSSALFFKYN 60
           MG+ KK  K+A  K++++ +  +  +++ L PKKK+ +  +A   R VP   S LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 120
           T LGPPY ++VDTNFINFSI+ KLDL ++MMDCLYAKC PCITDCVMAE+EKLGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 121 LRIAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFDRLPCTH+GTYADDC+V RV QHKCYIVAT DRDLKRRIRKIPGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180

Query: 181 QHKYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191
[Close]
BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Match: FCF1_YEAST (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.900e-62
Identity = 115/189 (60.85%), Postives = 146/189 (77.25%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MG++KK  KF + K+ + +K  ++ K+   N K K  E   L RN+P VSSALFF+YN A
Sbjct: 1   MGKAKKTRKFGLVKRTLNTKKDQRLKKNQENIKTK--EDPELTRNIPQVSSALFFQYNQA 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           + PPY+V++DTNFINFSIQ K+D+ + MMDCL AKC P ITDCVMAELEKLG KYR+AL+
Sbjct: 61  IKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALK 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           +A+DPR  RL C+H+GTYADDC+V RV QHKCYIVAT D  LK+RIRKIPG+P+M +  H
Sbjct: 121 LARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGH 180

Query: 181 KYSIERLPE 190
            Y IE+LP+
Sbjct: 181 AYVIEKLPD 187
[Close]
BLAST of Spo01712.1 vs. TAIR (Arabidopsis)
Match: AT2G46230.1 (PIN domain-like family protein)

HSP 1 Score: 320.5 bits (820), Expect = 8.700e-88
Identity = 151/194 (77.84%), Postives = 170/194 (87.63%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MG++KK  KFAV KK+++ K LK +K+EVLNP KKDL    LPRNVP+V + LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDL--TELPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           L PPYRV+VDTNFINFSIQNK+DLEK M DCLYA CTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDP F+RLPC H+GTYADDC+VDRV QHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 180

Query: 181 KYSIERLPEATMGG 195
           KYSIE+LPEAT+GG
Sbjct: 181 KYSIEKLPEATLGG 192
[Close]
BLAST of Spo01712.1 vs. TAIR (Arabidopsis)
Match: AT1G26530.1 (PIN domain-like family protein)

HSP 1 Score: 244.2 bits (622), Expect = 7.900e-65
Identity = 125/194 (64.43%), Postives = 146/194 (75.26%), Query Frame = 1 

		  

Query: 1   MGRSKKAPKFAVRKKLVTSKTLKQHKQEVLNPKKKDLEAANLPRNVPNVSSALFFKYNTA 60
           MGR+KK  KFAV K +++ K LK +K+EVLNP KKDL    LPRNVP+V S LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDL--TELPRNVPSVPSGLFFSHNSS 60

Query: 61  LGPPYRVIVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           L PPYRV+VDTNFINFSIQNK+DLEK MM                  + K+   Y     
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMM----------------VFVRKMHSLYYGL-- 120

Query: 121 IAKDPRFDRLPCTHRGTYADDCIVDRVNQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180
           IAKDPRF+RLPC  +GTYADDC+VDRV QHKC+IVATCDRDLKRRIRKIPGVPIMY+TQ 
Sbjct: 121 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 174

Query: 181 KYSIERLPEATMGG 195
           KYSIE+LPEAT+GG
Sbjct: 181 KYSIEKLPEATIGG 174
[Close]
BLAST of Spo01712.1 vs. TAIR (Arabidopsis)
Match: AT2G34570.1 (PIN domain-like family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.600e-7
Identity = 36/137 (26.28%), Postives = 67/137 (48.91%), Query Frame = 1 

		  

Query: 44  RNVPNVSSALFFKYNTALGPPYRVIVDTNFINFSIQNKLD-LEKAMMDCLYAKCTPCITD 103
           R   N  +  FF        PY+V+ D  F++  + N++   + A+ + L        T 
Sbjct: 5   RQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTR 64

Query: 104 CVMAELEKLGQKYRVALRIAKDPRFDRLPCTH-RGTYADDCI--VDRVNQHKCYIVATCD 163
           CV+AELEKLG+ +  +L  A+    +   C H     AD+C+  V  V   + + + T D
Sbjct: 65  CVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGTQD 124

Query: 164 RDLKRRIRKIPGVPIMY 177
            + +R++++   VP+++
Sbjct: 125 AEFRRKLQQESIVPLVF 139
The following BLAST results are available for this feature:
BLAST of Spo01712.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902174605|gb|KNA08440.1|7.1e-108100.hypothetical protein SOVF_1624... [more]
gi|731311455|ref|XP_010669629.1|1.1e-10092.2PREDICTED: rRNA-processing pro... [more]
gi|719969884|ref|XP_010269741.1|2.1e-9991.2PREDICTED: rRNA-processing pro... [more]
gi|223547871|gb|EEF49363.1|1.1e-9788.2Protein C14orf111, putative [R... [more]
gi|694995011|ref|XP_009410821.1|1.1e-9789.6PREDICTED: rRNA-processing pro... [more]
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BLAST of Spo01712.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QMD8_SPIOL5.0e-108100.Uncharacterized protein OS=Spi... [more]
A0A0J8D2J4_BETVU7.7e-10192.2Uncharacterized protein OS=Bet... [more]
B9RH01_RICCO7.9e-9888.2Protein C14orf111, putative OS... [more]
M0RWC3_MUSAM7.9e-9889.6Uncharacterized protein OS=Mus... [more]
A0A068UJP6_COFCA1.8e-9787.6Uncharacterized protein OS=Cof... [more]
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BLAST of Spo01712.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FCF1_BOVIN3.3e-7368.0rRNA-processing protein FCF1 h... [more]
FCF1_HUMAN3.3e-7368.0rRNA-processing protein FCF1 h... [more]
FCF1_PONAB3.3e-7368.0rRNA-processing protein FCF1 h... [more]
FCF1_MOUSE7.4e-7367.5rRNA-processing protein FCF1 h... [more]
FCF1_YEAST5.9e-6260.8rRNA-processing protein FCF1 O... [more]
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BLAST of Spo01712.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G46230.18.7e-8877.8PIN domain-like family protein[more]
AT1G26530.17.9e-6564.4PIN domain-like family protein[more]
AT2G34570.12.6e-726.2PIN domain-like family protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002716PIN domainSMARTSM00670PIN_9coord: 65..164
score: 9.1
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 90..186
score: 3.1
NoneNo IPR availablePANTHERPTHR12416UNCHARACTERIZEDcoord: 2..19
score: 8.6E-117coord: 51..194
score: 8.6E
NoneNo IPR availablePANTHERPTHR12416:SF2RRNA-PROCESSING PROTEIN FCF1 HOMOLOGcoord: 51..194
score: 8.6E-117coord: 2..19
score: 8.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0045040 protein import into mitochondrial outer membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0005515 protein binding
RNA-Seq Expression