Spo01748 (gene) | SpinachBase

Overview


Name	Spo01748
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Phot (Precursor)
Location	chr3 : 26361931 .. 26368154 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTTTTCCATTATGTTAATCGCTTTGTTATTAGTTATCATGAGTGAGTAGTTTAATTTCTAGGGTTTAGGGGATCCATGAATGCATGATTGGGATTATATGTGGATTTGATTATTTGATTGATTGATTATAATTTCTATAGCTTATTATTATTGCTCGTCAATTCTGTTCGGCCGGACTATTTTGATTTGAGTTTGATTAACCTTAGATTATGCGCCGAGAGGTATAAATCTGATGTTTTTGGTCTGTGGCTATTAGATAGGAATTATTTCTAGTACGTAGCGAGAGCCCGCTGGTTGTTCTATCCTAAGGAATTCATAAGATTCGAGAGATGCATGTTTTCCTAGTTATGATTGTTAATTAATTGTTATTGTCCGTTGTCCAATCCCGGTCTGCATTTGTGGTGAACCGCTGCCCTAGATTCCCTTAATATTGTTATATTCCAGTTTGATTATTTGCCTTAGCTTAATATACAAACCAATCCAATTCTTTGTTACCAGTAGTCTAGATTAGTTAATTAATAGTAGAAAGAACATTGTTTCCCTGTGGATACGATCCCTGCTTCCCTTGCTATATTTTTAGTTGGTGAATGTTAGGTTTATCTTTGATAGGAGTGCGATTTAGCCTGTCAGGATCTTGGAGGTCGGTGTTTTGTGTTCATCTACCTTGGTGAGGAAAAGAGTTTTAGGTTTTAGGAAGGGCCTGGGTATTGGGGTTTTGGTTGTTAAGTGGTTTTGGAGGATAGTTGTTGTTAATCCTCTGTTTAGGTTAACGTCGAGAGTTGTTCTCGATGCTTTCAAAATCTGTTATTTGAGCGCTGCTCCTCAAATTTTGGGGTTTCATAGTATGCTACCTAAGTCATGTCCCGTGACTGTAAATGCTTGTGTGTTAATCACAAGGTTTAACCAAATTCGCTGTCACTTTGTTTCCCTTCCACTCTTTTCTTTGCTTTCCATGTATTACAGGTTAGTTAAGGAACCTCCTAGTGTTAACTGCTTAAGCTACTGGCCAATCTCCTGCAATGATATCACAACCATGAGTGATCTTGGCACAATAACACCTTGTTGGTGGTGTAAACAAAGTTTTGACAATCAAGGACCGCCAGGGGAAGAGTCGGCTTCCCTTGCAGCTGTTAGGCATATGTTTTTAGTTTGTTTCGTAGTACATGTAATGGTCTATAAAGGCCTTAGTTTAATTGTTTAGTTTGTAAAACTCTTGTATTTATGTTAAAGTTAAATTGAGCCTATGTCAAAAAAAAAAAAAAAAAAAAAAAGGTTAATCGGGCTTGACCAGTTCCAATAAGTTTTGATCATATCCAATGAGTTTAGATAGTTCAGATCAGATAAGTTTAGATAAGTTGAATAGAAAGCACCCTAAACGAGACACTAGACAACACAATCAAAGAAAACGGTACAATAATAATAATAATAATAATAATAATAATAAAAATCATATAAACATGTATAGGAAAATTTTGTGTGAAATCACCACTTAAAGCATCCAAATGGACCTTATAGAAACTATACATAGCTCAAATAGCTATTACTCTCTGCACATCAATTGTTGATTTTCTTCACTAATTAATCCAAGAACACATCAAATACAAATAACTTCAGTACAGTGAAATTTAGAAGAAGAAAAAAAAAGAAGCAAACTTTAATATGTAGCATACTCCCTTAGAATTAATCAATTATAAGACAAACACCAAACGAAAACAATTATGATGTAGCAACCTTTTAGCAGAGTTGTTCTTCTGAGCGCTCTCCTTGTGTGACTAAACCAATCTGACATTGGAGCGTGTTAGCAAGAAAACAGCATCAGTACTCTAGCATCTTGGCTGAATTCACAAAGAGAAAAGATTTAGTGCATTTGTAGTAAAAAATGTTTGTAATTGGAAATTGTAAGGTTAGTTTAGAATGATTACTTACATCAAATGATACAACCGATCTGCAGTAGTAAGCGTTAGTAGCCATGGAGCAAGTGGAACCACACTCACTCTCTCTAAGTGAAACACTGGACTTATCAAGCTTAACTGACCACGGATAATTGTACTTTTGTGCAGCAGAACCTATTTGGGAGGAGGAACGCTGCATCTTGGCACCCTTTGGTATATTCCGTCCTTCAACAGACGGTCTTCTCCCACGACTTGGTTGCCTCTCCAACTCTGGCCTTTGTTTAGGTGCACTTTGTGACCGTGCTTTAGCTTTAGAAGATTGAGTATTTGCCATGTAATTTGGATAGAGAGGGTAATCATATGACATTGTCTCTGCAAAATCAGGTTGGGGGAATGAGAAAGGAGCCCTTGATGATGGGTAGCACTGCGGACTGCTTTGTGCAGTGGTGAAACAATAATCCTCAAAGTGGCCACTGCAAGTTCTTGGGCTCAATTCGGTGATGGCTGAAGGAGCTGGTGAATATTGCTGATAGTCCTGCTGCTTTATGTATGCATTCTGGTTGTGGTTAGAATAATATGTAGACATTCTATTGTCCATTCGATCATCAATTTGTTGTTGGCTTGATATCGAATAGCTATCCCTGCTGTCAACATTTGATATAAAATCTCCGCGATCCATTTCTACTATCTTGATATTATCCTCCATGTCCTGCATCATTATACAAATTCCAAATTATTCTGTTTTATCCTAGTTGTTAAGAGATCAGTGTGAACAGACAGCAGCACTGTTAATATACGACTTCCTCGATCCAGACTCATTAAGACTACTTTGAGATGTCAGGAAATATCTGTCAACTTTCTTACAAAATAATGATTTATGATTGGATTTACTAATAAGAAATTAAATCGATTAGTGACACCTATTCTACACAGCAAGATTACATGATTTGATTAAGCCATAATCAATTAACATTGCAAGATGGATCAGGAAAACTAAATCCTGATTCTTTGATTGATCGAAATAATGAGATTGACTCTGCTAATTGGGAGTGCATCCGTTAGTTTTATCTTGATCATATTTTTAGCATCAAATAATTCTAAGAATAGAAGTACTTTGCTACTGTCAAAATGTGAATGTTAATGGAAAATGATGGATAAGAAAAGTCAAATAACAGAATACTAACATGATTGAAATTCTCTTGGCTATTTCGTCGGTTAGTAGACTGTCTATGATTAATGGGCGTCCCGTCATCCCCTGATCGGATCCTTTGAGCTCGAGCTCGAGCTTGAGCCGTGATAAGCGCTTGCATACATCTCAGTGTTGCTGTTGCCTGCTTTCTTACCAAATGACCCCTTACCAACGCCTGCAACTTCACCAAACCTCTTAGTGCCTTCAGAGCCTTTCTAGCCTGCAATACACGTTTCCATTTATTACAATTCACACAATTCTTTGAATCTTGACACTGTCATTATCATAGTTTACCTGTTGTGGTCAAACAAATTTCCTAATCTTTGACCACTTTTATTTTCTTTCACTAAAAAAAAAAGTTAAAAATTTGACATACCAGATACGAGCGAAACACAGACTGAATCTTGACAGCAGCAGCAGCAGCAGCAGCCTCCTCATCCTCAACAGCGGTTTCATTTTCTTTACAATCACTAAAATCCGCCTGGGGATTCATCACTTCTTCCACTTGTGTATCCATCACTGTTACATTCTCTTCTGCAACAATTGCATCGGCTTCTACCTCCACCTCCACCTCAACCTCAACCTCAACCTCAACCTCAGCCTCCTGCATCTCTCCCGCCAAATTTACGGCCATCTGCGGAACTTGAGATTTCTCAACACTAACAGCATCAGCAGAAGCAACATCCTTAGCCGCATTAACATTATTACTATTATTACTGTTATTACTAGCAGACGATCTTCTAAAACTCCATCTCTTCTTCTCCTTCTCCTTCGGAGTTGTCGGTCTCGGTACCACTACCGCTACCTGAGTAGTCGTACCATTCAGATGATTATCCGTCGAAACGACAGACACCTCATTATTGGTATTACTTTTCTGATCCTTCTCACCTTTAGACAACTGATTATTATTAGTATTACTCTTCTTCTGATCCTTCTCGCCTTTGTCCTTCTTTCCTACCAGCAAATTCTTGAACCACTTTCCTGTTTTCCCCATTTTAGCTACTTCAACAATGAATGTAAAATGGAAAATTAATAATTACTCCGTAGATCAAATACATTGGAGAGTAACAATAATAACGACGTAGCAGCACTTCCTTCCTTGTGTCAAAGCTGTCGTTAGTTGGTCAGTTCATATTTAATATACAGAGATGTTGTCTTATTTATGTTGCATAATTGAGTTTATACTACTCTTTTGTATTTTCTCTCTAATATACTGCTGTCAATGTCTGTGCCATATCCGATCTTTTTTTTTAATGACGGAGTATTCGTCTTATTTATTTACATTTTCTTTGATGGGCATAAAGTGGTTGGTCACTAAGTGAAGGAACTAAGGAAGTAGAGAGGAAGCTCTAGTTTGGTTAAGCATGTTTAATGAATTAGACTTTACTATTAAAATGATGGTTGATTTTTAAGACCCATGTCCTTACCAATTACTAGTAGTAGAATTTATTGGTAATTGTGTTTTTTGGATTAGGTTCATATGATTCACTCCGGATTTAA

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTAGTTAAGGAACCTCCTAGTGTTAACTGCTTAAGCTACTGGCCAATCTCCTGCAATGATATCACAACCATGAGTGATCTTGGCACAATAACACCTTGTTGGTGGTGTAAACAAAGTTTTGACAATCAAGGACCGCCAGGGGAAGAGTCGGCTTCCCTTGCAGCTGTTAGGCATATGTTTTTAATACGAGCGAAACACAGACTGAATCTTGACAGCAGCAGCAGCAGCAGCAGCCTCCTCATCCTCAACAGCGGTTTCATTTTCTTTACAATCACTAAAATCCGCCTGGGGATTCATCACTTCTTCCACTTGTGTATCCATCACTGTTACATTCTCTTCTGCAACAATTGCATCGGCTTCTACCTCCACCTCCACCTCAACCTCAACCTCAACCTCAACCTCAGCCTCCTGCATCTCTCCCGCCAAATTTACGGCCATCTGCGGAACTTGAGATTTCTCAACACTAACAGCATCAGCAGAAGCAACATCCTTAGCCGCATTAACATTATTACTATTATTACTGTTATTACTAGCAGACGATCTTCTAAAACTCCATCTCTTCTTCTCCTTCTCCTTCGGAGTTGTCGGTCTCGGTACCACTACCGCTACCTGAGTAGTCGTACCATTCAGATGATTATCCGTCGAAACGACAGACACCTCATTATTGGTTCATATGATTCACTCCGGATTTAA

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTAGTTAAGGAACCTCCTAGTGTTAACTGCTTAAGCTACTGGCCAATCTCCTGCAATGATATCACAACCATGAGTGATCTTGGCACAATAACACCTTGTTGGTGGTGTAAACAAAGTTTTGACAATCAAGGACCGCCAGGGGAAGAGTCGGCTTCCCTTGCAGCTGTTAGGCATATGTTTTTAATACGAGCGAAACACAGACTGAATCTTGACAGCAGCAGCAGCAGCAGCAGCCTCCTCATCCTCAACAGCGGTTTCATTTTCTTTACAATCACTAAAATCCGCCTGGGGATTCATCACTTCTTCCACTTGTGTATCCATCACTGTTACATTCTCTTCTGCAACAATTGCATCGGCTTCTACCTCCACCTCCACCTCAACCTCAACCTCAACCTCAACCTCAGCCTCCTGCATCTCTCCCGCCAAATTTACGGCCATCTGCGGAACTTGAGATTTCTCAACACTAACAGCATCAGCAGAAGCAACATCCTTAGCCGCATTAACATTATTACTATTATTACTGTTATTACTAGCAGACGATCTTCTAAAACTCCATCTCTTCTTCTCCTTCTCCTTCGGAGTTGTCGGTCTCGGTACCACTACCGCTACCTGAGTAGTCGTACCATTCAGATGATTATCCGTCGAAACGACAGACACCTCATTATTGGTTCATATGATTCACTCCGGATTTAA

Protein sequence

MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLVKEPPSVNCLSYWPISCNDITTMSDLGTITPCWWCKQSFDNQGPPGEESASLAAVRHMFLIRAKHRLNLDSSSSSSSLLILNSGFIFFTITKIRLGIHHFFHLCIHHCYILFCNNCIGFYLHLHLNLNLNLNLSLLHLSRQIYGHLRNLRFLNTNSISRSNILSRINIITIITVITSRRSSKTPSLLLLLLRSCRSRYHYRYLSSRTIQMIIRRNDRHLIIGSYDSLRI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01748.1	Spo01748.1	mRNA

Homology

[Close]

BLAST of Spo01748.1 vs. NCBI nr
Match: gi|139388074|ref|YP_001123266.1| (PSII 32 KDa protein [Barbarea verna])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. NCBI nr
Match: gi|296033673|gb|ADG84714.1| (PsbA, partial (plastid) [Dianthus deltoides])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 67 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 97

[Close]

BLAST of Spo01748.1 vs. NCBI nr
Match: gi|408901320|gb|AFU95394.1| (PsbA, partial (chloroplast) [Erythroxylum areolatum])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. NCBI nr
Match: gi|16119014|gb|AAL14703.1|AF420302_1 (photosystem II D1 protein [Amaranthus powellii])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. NCBI nr
Match: gi|669216557|gb|AII18210.1| (photosystem II protein D1, partial (chloroplast) [Viburnum clemensae])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Match: A0A120IGQ5_9FABA (Photosystem II protein D1 OS=Polygala alba GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.700e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Match: A0A0Y0UJ17_9FABA (Photosystem II protein D1 OS=Psoralidium lanceolatum GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.700e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Match: A0A075TPP7_CAMSI (Photosystem II protein D1 OS=Camellia sinensis var. dehungensis GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.700e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Match: A0A075TNS3_9ERIC (Photosystem II protein D1 OS=Camellia grandibracteata GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.700e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Match: U3MEX9_9GENT (Photosystem II protein D1 OS=Astephanus triflorus GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.700e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Match: PSBA_GOSBA (Photosystem II protein D1 OS=Gossypium barbadense GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.500e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Match: PSBA_ATRBE (Photosystem II protein D1 OS=Atropa belladonna GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.500e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Match: PSBA_BARVE (Photosystem II protein D1 OS=Barbarea verna GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.500e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Match: PSBA_MANES (Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.500e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Match: PSBA_POPTR (Photosystem II protein D1 OS=Populus trichocarpa GN=psbA PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.500e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

[Close]

BLAST of Spo01748.1 vs. TAIR (Arabidopsis)
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 181.4 bits (459), Expect = 8.700e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


		  
Query: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
          MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 92
          DGIREPVSGSLLYGNNIISGAIIPTSAAIGL
Sbjct: 61 DGIREPVSGSLLYGNNIISGAIIPTSAAIGL 91

The following BLAST results are available for this feature:

BLAST of Spo01748.1 vs. NCBI nr
BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
BLAST of Spo01748.1 vs. TAIR (Arabidopsis)

BLAST of Spo01748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|139388074\|ref\|YP_001123266.1\|	2.5e-42	100.	PSII 32 KDa protein [Barbarea ...	[more]
gi\|296033673\|gb\|ADG84714.1\|	2.5e-42	100.	PsbA, partial (plastid) [Diant...	[more]
gi\|408901320\|gb\|AFU95394.1\|	2.5e-42	100.	PsbA, partial (chloroplast) [E...	[more]
gi\|16119014\|gb\|AAL14703.1\|AF420302_1	2.5e-42	100.	photosystem II D1 protein [Ama...	[more]
gi\|669216557\|gb\|AII18210.1\|	2.5e-42	100.	photosystem II protein D1, par...	[more]

BLAST of Spo01748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A120IGQ5_9FABA	1.7e-42	100.	Photosystem II protein D1 OS=P...	[more]
A0A0Y0UJ17_9FABA	1.7e-42	100.	Photosystem II protein D1 OS=P...	[more]
A0A075TPP7_CAMSI	1.7e-42	100.	Photosystem II protein D1 OS=C...	[more]
A0A075TNS3_9ERIC	1.7e-42	100.	Photosystem II protein D1 OS=C...	[more]
U3MEX9_9GENT	1.7e-42	100.	Photosystem II protein D1 OS=A...	[more]

BLAST of Spo01748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSBA_GOSBA	1.5e-44	100.	Photosystem II protein D1 OS=G...	[more]
PSBA_ATRBE	1.5e-44	100.	Photosystem II protein D1 OS=A...	[more]
PSBA_BARVE	1.5e-44	100.	Photosystem II protein D1 OS=B...	[more]
PSBA_MANES	1.5e-44	100.	Photosystem II protein D1 OS=M...	[more]
PSBA_POPTR	1.5e-44	100.	Photosystem II protein D1 OS=P...	[more]

BLAST of Spo01748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
ATCG00020.1	8.7e-46	100.	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	GENE3D	1.20.85.10		coord: 19..95 score: 7.
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 28..94 score: 4.5
IPR000484	Photosynthetic reaction centre, L/M	unknown	SSF81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 12..95 score: 7.2
None	No IPR available	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 2..91 score: 2.7
None	No IPR available	PANTHER	PTHR33149:SF6	SUBFAMILY NOT NAMED	coord: 2..91 score: 2.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016168	chlorophyll binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18044	0.99	Barchart \| Table
Spo17010	0.86	Barchart \| Table
Spo16196	0.84	Barchart \| Table
Spo06201	0.84	Barchart \| Table
Spo24708	0.83	Barchart \| Table
Spo06200	0.83	Barchart \| Table
Spo16490	0.83	Barchart \| Table
Spo24707	0.83	Barchart \| Table
Spo04277	0.82	Barchart \| Table
Spo10627	0.81	Barchart \| Table
Spo04278	0.81	Barchart \| Table
Spo02851	0.81	Barchart \| Table
Spo22445	0.80	Barchart \| Table
Spo11904	0.80	Barchart \| Table
Spo24717	0.80	Barchart \| Table
Spo16485	0.80	Barchart \| Table
Spo16484	0.79	Barchart \| Table
Spo25555	0.79	Barchart \| Table
Spo26126	0.79	Barchart \| Table
Spo05875	0.77	Barchart \| Table
Spo08440	0.77	Barchart \| Table
Spo25538	0.77	Barchart \| Table
Spo00626	0.76	Barchart \| Table
Spo16486	0.75	Barchart \| Table
Spo26127	0.75	Barchart \| Table
Spo09413	0.75	Barchart \| Table
Spo25004	0.74	Barchart \| Table
Spo21946	0.74	Barchart \| Table
Spo13959	0.72	Barchart \| Table
Spo25537	0.71	Barchart \| Table
Spo24719	0.71	Barchart \| Table
Spo22572	0.71	Barchart \| Table
Spo24718	0.70	Barchart \| Table
Spo17923	0.70	Barchart \| Table
Spo19560	0.70	Barchart \| Table
Spo06757	0.70	Barchart \| Table
Spo13957	0.66	Barchart \| Table
Spo14816	0.65	Barchart \| Table