Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTCCTGCTTGAGTGGAGGTGGACGGGCAGCCTATACAATTGACCTTGATATTATTAAATCCCCCTCAACTTCAACCCGTACCTCTCATTCTTCGTCGCCTTCTTCGACTATATCAGAATCAAGCAATTCTCCACTAGCAATCTCAACTCGAAAGCCAAGGACACCTCGAAAACGCCCAAATCAGACTTACAATGAGGCAGCTGCCTTGCTTTCCACAGCTTATCCAAATATCTTCTCCGCCAAGGATATATGTAAGCCTGGCAAATTCATCAAGCCCCGTGAGTACTCTTCCTTTTCCTTTGAAGAAACCTCTGGTGAATTGCTCCTACCTTTCCCAGTTGAGAAACCTGTATTTCATATAGATTCAACTGTCTATGGCAAGTCATACTCGAATGACATGGATGAAATCGGTTGCCAAACGAATTCCTCTAATTTATCTGATGGGTACGAAGATTTCGATGCAGAATCTATCCTTGATGAGGAAATTGGAGAGGGTGCTATAGACAGCATAATGGGGGATATGAGTGAGTGTGTCGAAGGAGAATCCACGACTTGCTCTGATGGCGGTGTTGGTCCGGTTAATTTCTGTTATGGTTATCCTGTGGGATTAGGACTAGGATTAGGATTAGGATTAGGTGGGAGATTTGATTTTGGATTTGGATTGATGAGAGGAGGAGTGGCCAAGGCATTTAGACAAAGTGACGAGGGAGATTGGTGGAGATTTCCTGCTGTTGATGTTGGTGAAATTTCACCAAGGTTTAACAAGCCTTTGCCAGCTGAGAAGAAGAAAAAGTTGGATAAATTAAACACCAAGCCCTCTTCTTCAACCCCAAAGAAAGATATTTCAGTGTCCATTCCCAAATCTAGTTCAGCCCTGAGCAAGGAAAATTCATCCTCAAGTCCTAAGTCCAGTTCAACATCATCAGGCAAGGAAAATTCAGCCCCAAATCCTAAACCCATCCCTGGGGTGCTCTTGAAACTGAATTATGATGAGGTTTTGAATGCTTGGTCAAATCGGGGTTCGCCTTTCTCCGATGATGGCTCCGAGCTTTCTGGAAGTGATGCCTTGGTATGTTCTAGATTCATCTTTGTCTCTGTTGAGTTTTTCGAGGTCTCATTATTAATGTATGAACTGACTTGTGTATTCCCCGTCTATAATTAAGTTGTTTGGTAAAGGTATATTGGGAAAAAAATCAATTGATTATATAGGAAATTGTAAAAGTAAGTACATCCTTTTAGGACACCCAAAATGGAAAACAGGCACTATATTTTGGGACGGACATCATTTCTTTTTAGACTAACCAAATGGTAAAAATCTTAATTACAAAGTACTCCACATAACGGAGCGGATATAGACTGTAGTGGAGTCAAAATATAGACGCTCTCTTGTATGAACTGAAAAATTAGTTTAACAGAGTTTGGCGCCTAATGATACTTTGAGTTTGTTGTTTGGATTAAACGATAACAGACTTTTATTTCCCAATTAAAAGTTTCAGTTTTGGAGTATTTCAAGTTTTGGTGTTTCTTCTTTGGGCCTCACTACAGTTGAAAAAGGATTAAATTAATATCAAGTGAGACAAAAAGAAGAATGGTTGTGTTTAACTCATATTATAATACACAGTCAAGTATTCCGTTACTACTTAAATAATAGTAATATTTAATTTGTGCAGTCCCCTAAATTAGGGTTTGCATAGATGTTTTTTTCCCCCTTCTAATACACTGCTTATCATTTCCAGAATATAATGTAATGCATGTGAAAGAGGCATATTGCTTGCTTTTTCCAGCCTATCTATGCTCCCTTTTATTTCACTTATGATGGAATCGTCAACAAAATTAAAGAAATTAAAAGATAGAACTGTTGAAATGGCAGGCAAGATTGGCACAGATAGATCTATTTGGTGAGTCTGGGGCCTTGAGGGAAGCAAGTGTTCAGCGGTACAAGGAGAAAAGGCGAACGCGATTCTTTTCAAAGAAGATTAGGTATCAAGTTAGAAAGGTTAATGCTGATCAACGACCGAGAATGAAGGTATGCAACAATGCCAACTTGGTCAGTGCTCAATCTCAGTCATGTCAAATTCTAATACTTCATGTGGGTTTGTATTTGTTCTTGATGCTTTGTGCTCTTCTTCCTTTGCGGCAAGGAGATATGCCTGCTTAGTTGCATATTATGCTAGTTTGGGATTGATTTCATCCATTTAATGTTTTAGTTTTCTGAGCTCATGTATATGCCTAAGTTCGTAAACAATTGGCCATATGCTTTACACCATTTAAATATTTACTTTTCATGTTTCAACGGTTCAACCATGCCATAAATTCAGGTTTTACTCTTTAAGTTTGACATATATGCTGATGTAGACTTTGATCAAACACACACTGCAGCTTTTGCTGATTGCTAGTTTCAGGAATCAGGAACATGTTCCATCCTCAATTCTCAAATATCTCCTGTCATTATGTTCTTTGTGCTGTCCTGCAATTTCGGAAACATTTCTTGTTATAAAAATTCCACTGTATTTTATCTTGCACTTATCTCTAATGTTTTGTGTTTCTCAATATGTATTAGTTTCCTTGTATTGAAATGTTTGCATCAGTATGAGCGTGCTGTACTAGCCTACGTTATTGGTTTATATACTATCTTACATTTCTTCTATCTCCTAATGTAAAATATACTTGTTTTATTGCAGGGGCGATTTGTTAGAAGGCCAAATTCATCTGGGAGTGAAGAAATAAAGTAGCAAATGGTCCTTTGGCCTCCCAGTCCTTTTAGCTTTTACCTTATAGGAGTTCACACTTTTTGTAAGAATTTTGCAAATTCCACACACTAAACTGTAGCTAAGGCTAGGTAACAGGGATGATTGAAGAGCTGTAGTGTCATTATTCCCTCAATTTTTTGTAGTCTTTAAATCAACGGTTTGTACTTAGCAGCTTCTTTCAAATAAGAAGATTTGTTGGTGAGAACTGTTAGGTTTTCTGCTTCCAAATGGTATGCCAATAATTTAAATGAGGGAGAAGGGATTCATCCCTTTATTTCTATGTCAATTTAATTTTCGCTATATTTGCCGGGAAAAAACTTGCTTTCAGCTGTACACATGTACGTGCTTAATAATTTGCATGTGCTGATATAAGGAGGGAGACTGCATCGTTGGTAACCAGCGGCACAATTACTCCATACCCGGGGTAAAATGGTAATTTCATCTCATGAGTTGAAAAGTCAAACAAAGTACTATATATGAGCAAAAATGACAGTAATTAGTACAACAATGACAGTATTTTAATACAACAATGACAGTATTTATGCAAACGATGACAAAACTTATATAACACTTGTATACATACTTTTACCCATTCA ATGAGCTCCTGCTTGAGTGGAGGTGGACGGGCAGCCTATACAATTGACCTTGATATTATTAAATCCCCCTCAACTTCAACCCGTACCTCTCATTCTTCGTCGCCTTCTTCGACTATATCAGAATCAAGCAATTCTCCACTAGCAATCTCAACTCGAAAGCCAAGGACACCTCGAAAACGCCCAAATCAGACTTACAATGAGGCAGCTGCCTTGCTTTCCACAGCTTATCCAAATATCTTCTCCGCCAAGGATATATGTAAGCCTGGCAAATTCATCAAGCCCCGTGAGTACTCTTCCTTTTCCTTTGAAGAAACCTCTGGTGAATTGCTCCTACCTTTCCCAGTTGAGAAACCTGTATTTCATATAGATTCAACTGTCTATGGCAAGTCATACTCGAATGACATGGATGAAATCGGTTGCCAAACGAATTCCTCTAATTTATCTGATGGGTACGAAGATTTCGATGCAGAATCTATCCTTGATGAGGAAATTGGAGAGGGTGCTATAGACAGCATAATGGGGGATATGAGTGAGTGTGTCGAAGGAGAATCCACGACTTGCTCTGATGGCGGTGTTGGTCCGGTTAATTTCTGTTATGGTTATCCTGTGGGATTAGGACTAGGATTAGGATTAGGATTAGGTGGGAGATTTGATTTTGGATTTGGATTGATGAGAGGAGGAGTGGCCAAGGCATTTAGACAAAGTGACGAGGGAGATTGGTGGAGATTTCCTGCTGTTGATGTTGGTGAAATTTCACCAAGGTTTAACAAGCCTTTGCCAGCTGAGAAGAAGAAAAAGTTGGATAAATTAAACACCAAGCCCTCTTCTTCAACCCCAAAGAAAGATATTTCAGTGTCCATTCCCAAATCTAGTTCAGCCCTGAGCAAGGAAAATTCATCCTCAAGTCCTAAGTCCAGTTCAACATCATCAGGCAAGGAAAATTCAGCCCCAAATCCTAAACCCATCCCTGGGGTGCTCTTGAAACTGAATTATGATGAGGTTTTGAATGCTTGGTCAAATCGGGGTTCGCCTTTCTCCGATGATGGCTCCGAGCTTTCTGGAAGTGATGCCTTGGCAAGATTGGCACAGATAGATCTATTTGGTGAGTCTGGGGCCTTGAGGGAAGCAAGTGTTCAGCGGTACAAGGAGAAAAGGCGAACGCGATTCTTTTCAAAGAAGATTAGGTATCAAGTTAGAAAGGTTAATGCTGATCAACGACCGAGAATGAAGGGGCGATTTGTTAGAAGGCCAAATTCATCTGGGAGTGAAGAAATAAAGTAGCAAATGGTCCTTTGGCCTCCCAGTCCTTTTAGCTTTTACCTTATAGGAGTTCACACTTTTTGTAAGAATTTTGCAAATTCCACACACTAAACTGTAGCTAAGGCTAGGTAACAGGGATGATTGAAGAGCTGTAGTGTCATTATTCCCTCAATTTTTTGTAGTCTTTAAATCAACGGTTTGTACTTAGCAGCTTCTTTCAAATAAGAAGATTTGTTGGTGAGAACTGTTAGGTTTTCTGCTTCCAAATGGTATGCCAATAATTTAAATGAGGGAGAAGGGATTCATCCCTTTATTTCTATGTCAATTTAATTTTCGCTATATTTGCCGGGAAAAAACTTGCTTTCAGCTGTACACATGTACGTGCTTAATAATTTGCATGTGCTGATATAAGGAGGGAGACTGCATCGTTGGTAACCAGCGGCACAATTACTCCATACCCGGGGTAAAATGGTAATTTCATCTCATGAGTTGAAAAGTCAAACAAAGTACTATATATGAGCAAAAATGACAGTAATTAGTACAACAATGACAGTATTTTAATACAACAATGACAGTATTTATGCAAACGATGACAAAACTTATATAACACTTGTATACATACTTTTACCCATTCA ATGAGCTCCTGCTTGAGTGGAGGTGGACGGGCAGCCTATACAATTGACCTTGATATTATTAAATCCCCCTCAACTTCAACCCGTACCTCTCATTCTTCGTCGCCTTCTTCGACTATATCAGAATCAAGCAATTCTCCACTAGCAATCTCAACTCGAAAGCCAAGGACACCTCGAAAACGCCCAAATCAGACTTACAATGAGGCAGCTGCCTTGCTTTCCACAGCTTATCCAAATATCTTCTCCGCCAAGGATATATGTAAGCCTGGCAAATTCATCAAGCCCCGTGAGTACTCTTCCTTTTCCTTTGAAGAAACCTCTGGTGAATTGCTCCTACCTTTCCCAGTTGAGAAACCTGTATTTCATATAGATTCAACTGTCTATGGCAAGTCATACTCGAATGACATGGATGAAATCGGTTGCCAAACGAATTCCTCTAATTTATCTGATGGGTACGAAGATTTCGATGCAGAATCTATCCTTGATGAGGAAATTGGAGAGGGTGCTATAGACAGCATAATGGGGGATATGAGTGAGTGTGTCGAAGGAGAATCCACGACTTGCTCTGATGGCGGTGTTGGTCCGGTTAATTTCTGTTATGGTTATCCTGTGGGATTAGGACTAGGATTAGGATTAGGATTAGGTGGGAGATTTGATTTTGGATTTGGATTGATGAGAGGAGGAGTGGCCAAGGCATTTAGACAAAGTGACGAGGGAGATTGGTGGAGATTTCCTGCTGTTGATGTTGGTGAAATTTCACCAAGGTTTAACAAGCCTTTGCCAGCTGAGAAGAAGAAAAAGTTGGATAAATTAAACACCAAGCCCTCTTCTTCAACCCCAAAGAAAGATATTTCAGTGTCCATTCCCAAATCTAGTTCAGCCCTGAGCAAGGAAAATTCATCCTCAAGTCCTAAGTCCAGTTCAACATCATCAGGCAAGGAAAATTCAGCCCCAAATCCTAAACCCATCCCTGGGGTGCTCTTGAAACTGAATTATGATGAGGTTTTGAATGCTTGGTCAAATCGGGGTTCGCCTTTCTCCGATGATGGCTCCGAGCTTTCTGGAAGTGATGCCTTGGCAAGATTGGCACAGATAGATCTATTTGGTGAGTCTGGGGCCTTGAGGGAAGCAAGTGTTCAGCGGTACAAGGAGAAAAGGCGAACGCGATTCTTTTCAAAGAAGATTAGGTATCAAGTTAGAAAGGTTAATGCTGATCAACGACCGAGAATGAAGGGGCGATTTGTTAGAAGGCCAAATTCATCTGGGAGTGAAGAAATAAAGTAG MSSCLSGGGRAAYTIDLDIIKSPSTSTRTSHSSSPSSTISESSNSPLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNIFSAKDICKPGKFIKPREYSSFSFEETSGELLLPFPVEKPVFHIDSTVYGKSYSNDMDEIGCQTNSSNLSDGYEDFDAESILDEEIGEGAIDSIMGDMSECVEGESTTCSDGGVGPVNFCYGYPVGLGLGLGLGLGGRFDFGFGLMRGGVAKAFRQSDEGDWWRFPAVDVGEISPRFNKPLPAEKKKKLDKLNTKPSSSTPKKDISVSIPKSSSALSKENSSSSPKSSSTSSGKENSAPNPKPIPGVLLKLNYDEVLNAWSNRGSPFSDDGSELSGSDALARLAQIDLFGESGALREASVQRYKEKRRTRFFSKKIRYQVRKVNADQRPRMKGRFVRRPNSSGSEEIK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01791.1 vs. NCBI nr
Match: gi|902195073|gb|KNA12746.1| (hypothetical protein SOVF_123200 isoform B [Spinacia oleracea]) HSP 1 Score: 812.8 bits (2098), Expect = 2.900e-232 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1
BLAST of Spo01791.1 vs. NCBI nr
Match: gi|902195072|gb|KNA12745.1| (hypothetical protein SOVF_123200 isoform A [Spinacia oleracea]) HSP 1 Score: 805.8 bits (2080), Expect = 3.600e-230 Identity = 426/433 (98.38%), Postives = 426/433 (98.38%), Query Frame = 1
BLAST of Spo01791.1 vs. NCBI nr
Match: gi|731315328|ref|XP_010690879.1| (PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 702.2 bits (1811), Expect = 5.500e-199 Identity = 384/430 (89.30%), Postives = 399/430 (92.79%), Query Frame = 1
BLAST of Spo01791.1 vs. NCBI nr
Match: gi|731315326|ref|XP_010690870.1| (PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 695.3 bits (1793), Expect = 6.800e-197 Identity = 384/437 (87.87%), Postives = 399/437 (91.30%), Query Frame = 1
BLAST of Spo01791.1 vs. NCBI nr
Match: gi|225470656|ref|XP_002268213.1| (PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 isoform X1 [Vitis vinifera]) HSP 1 Score: 375.6 bits (963), Expect = 1.200e-100 Identity = 252/445 (56.63%), Postives = 293/445 (65.84%), Query Frame = 1
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZR0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_123200 PE=4 SV=1) HSP 1 Score: 812.8 bits (2098), Expect = 2.000e-232 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZQ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_123200 PE=4 SV=1) HSP 1 Score: 805.8 bits (2080), Expect = 2.500e-230 Identity = 426/433 (98.38%), Postives = 426/433 (98.38%), Query Frame = 1
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX90_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025110 PE=4 SV=1) HSP 1 Score: 702.2 bits (1811), Expect = 3.900e-199 Identity = 384/430 (89.30%), Postives = 399/430 (92.79%), Query Frame = 1
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D262_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025110 PE=4 SV=1) HSP 1 Score: 695.3 bits (1793), Expect = 4.700e-197 Identity = 384/437 (87.87%), Postives = 399/437 (91.30%), Query Frame = 1
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Match: F6I5M8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00760 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 8.300e-101 Identity = 252/445 (56.63%), Postives = 293/445 (65.84%), Query Frame = 1
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Match: CIA2_ARATH (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 4.500e-68 Identity = 201/443 (45.37%), Postives = 259/443 (58.47%), Query Frame = 1
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.500e-13 Identity = 58/139 (41.73%), Postives = 71/139 (51.08%), Query Frame = 1
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2) HSP 1 Score: 75.9 bits (185), Expect = 1.200e-12 Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Match: COL8_ARATH (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 7.900e-12 Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 1.000e-11 Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 1
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Match: AT5G57180.2 (chloroplast import apparatus 2) HSP 1 Score: 260.0 bits (663), Expect = 2.600e-69 Identity = 201/443 (45.37%), Postives = 259/443 (58.47%), Query Frame = 1
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Match: AT4G25990.2 (CCT motif family protein) HSP 1 Score: 235.3 bits (599), Expect = 6.800e-62 Identity = 190/439 (43.28%), Postives = 248/439 (56.49%), Query Frame = 1
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Match: AT5G14370.1 (CCT motif family protein) HSP 1 Score: 84.7 bits (208), Expect = 1.500e-16 Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Match: AT1G07050.1 (CCT motif family protein) HSP 1 Score: 79.3 bits (194), Expect = 6.200e-15 Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Match: AT1G73870.1 (B-box type zinc finger protein with CCT domain) HSP 1 Score: 77.0 bits (188), Expect = 3.100e-14 Identity = 58/139 (41.73%), Postives = 71/139 (51.08%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01791.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01791.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01791.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01791.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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