Spo01961 (gene)

Overview
NameSpo01961
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01438 : 154973 .. 157838 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTAGCCAATTATCTTGACCGGTTACATGTAAGCCTCTCACGTGATTCATATGCATTGCCTTGTGTAGCTAAGTTTCTAAAATTCTGCATAAGCGTATAATTCTCCCAGGTTTTGTTTTATGCAGGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGGTTGTGTTCTAATAACTATTTTCCTCATTTGTTTGATGCTCTGTCTTACTAGGAGTATGTCAAAAGAAATGACAACAATAGGCAGTATTAGCATCTCAACATTGTATTGGAAAGTTTTATTGTATATGATATTAGCAATTCAGATATATTATCCAGAAAGAATAACTCTGGGACTGTGAACATAAGCAATATGTATGGCTAAATATTACTTGTAAAGGCTTAAAACTCATCATTGAATATTATAGCTTTATCTCATTTTTTTTACTAGCGCTAGCTTTTATCCTAACTTTACTAATTATACATTCTTTTGTTGAAGTGCAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGTAAGTTTTAGATTAGAATAAANGTAAAAGGACATATATCTATGTAAGTTTTAGATTAGAATAAACTTCTCTGTTCTCTTTCTTAAACTGGTTTTACTACTGTCAAATTCCTGTCATTTTACTGCTGTTTTTATGTTGGCTATAATCTGAATGTTAGCTGTGTTGTCCGGCCTGTGGGATAACTGTTGAAACACTGCACCAAAAGGGAAGGGGGAGGTGGGATTAACTCTTTTTTTTTGGCAATTAATAATAGGATATATTAAAAACCAAAGCCTTAAGAACACTCAAGGGAAAGAACAGTGAGCACAGACCACAAAACACCAGCCCCAAAAAGAGCACAAACTGAGCAACAGCTAAGACTAGCTACGACAGTAGCTACTAAGCATACTCTACTCTACTCCTGAGATCATCAGAACATCTAGAGATCCCTATACTTCTCAGAACTCTCTGCCAGACAGCAGCAGAAAACAAACAGCCAAAGAACAAATGCTCAACAGACTCCTTCTCAGAATTACACAGAACACAAACATCACTACAGGATTAACTCTTTTGCACAGATTTTACAATTCCTTACAAAAGTAGAAGGAAACTTTCAGGAAGAAGATATATTAATAGGCTTCATCAAAACTAATCTGAGACACTTTGGATTAGTGAAGGCATTAGCTTCAATGCANTTCCCCCCCCCCCCCCCCCCCCCCCCCAAATAACAAGGCTTTATAGACCTTTCTACTTTTGAGCATTGGCCATTCTAGCTATGAGGATTGATCTGAGTACCAAAAAAAGGAGAGTAAAAAACAAACATAGTGCGGCAGTGCCCCTTATGAAAACCATAGGTAAAAAACAGAAATATCAGGAGATTTCAGAGTTTGAAGAGGCCCAAGAGTGTGCCTGATAGCATTGCGAAACAAGCGCAGACTTTGATTTATATTAAATGTCTTCATGAACAGAAAATAGTAGCTTTGTGCCTCAGGTTTGGTGGTTGTTTGATTATATACTGCCTACATTCTGTTTGAACTGTCAGGCTTGAGTTTGTAATCTTAAACTGTTCTACTCCCTTTTTTCTTGGTTAAGAGACACAATTGAGATGTTAGCTTGTTGATATGTGCTGTATTGGATATGTTGTTATTCAAAACTGAAAGTATATGGTCTTTCATTTCAGCAACCTAATAGATTTTCGCAAAACATAACGTCTATTTTGCATATTTCAGTAGTCGCAGTCTTAACTAATTACTATGTTCTAATTGTCCATTATACATTATGTCGTTTGGTTTATACTGGGTTCTCTTTAATTCTGGGGTCATTTGGTTTTAAGAATTGAAAGTATTACAGGATAAATCGGTGATCACATGCATATTTAACAATGTTGTAACTGAGCGTATCATAGTTGAGGAAACTGTATTAGTGGTGTAGATGGAGCTGTCCTTTAATTATGCATGTATCTGATGTATCTGTTCCGTTTCAAGAGTCTTCAAATGAATGATATATGCCACGCAAGTGATTAACCGTGTTTCAAGAGTCTACAACTAATAATACTTGGAACAATTGTTCTCATGTTTAGGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATAGTAAGATTTAATTAGTTTGATTATTATTTTTATCGTAGATTCATATATATGTTATTCTTTAATTTAATGTGTATTATATTTGTATCTTAGTGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGGTACGTGTACATGTATGTTTGTTATTATTTTATCTCAGTTGTTACTATATATGCGCTAGCTTTTATCTAAGCTTTACTAATTAATTCATTATTTTGTTGAAGTACAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAGTCATTTTCTAGTTTTCACAGATAGAAATTAAACTATAACAAAGCGCAGGTTATTTTTTGGAATACAATTATTTACAATTGTACGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAATATTTTCGCTATTCTGCAG

mRNA sequence

ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATATGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAGTCATTTTCTAGTTTTCACAGATAGAAATTAAACTATAACAAAGCGCAGGTTATTTTTTGGAATACAATTATTTACAATTGTACGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAATATTTTCGCTATTCTGCAG

Coding sequence (CDS)

ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATATGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAG

Protein sequence

MYYSFAIILQLIKFIFSCFWTRNIRYDILRILQSLLMRSWKIGDSTQVLQRQDIFSKPVHSRGDRRCSRKMEQLFLLIVGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01961.1Spo01961.1mRNA


Homology
[Close]
BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902228689|gb|KNA21218.1| (hypothetical protein SOVF_045340 isoform B [Spinacia oleracea])

HSP 1 Score: 185.3 bits (469), Expect = 9.300e-44
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1 

		  

Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEEIFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEIFSPNPYTQEEINDVREKWSRYFXCRL 169
[Close]
BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902228688|gb|KNA21217.1| (hypothetical protein SOVF_045340 isoform A [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42
Identity = 89/101 (88.12%), Postives = 91/101 (90.10%), Query Frame = 1 

		  

Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEE----IFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEE    IFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEVRVHIFSPNPYTQEEINDVREKWSRYFXCRL 173
[Close]
BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902150993|gb|KNA05474.1| (hypothetical protein SOVF_190000, partial [Spinacia oleracea])

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-14
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 

		  

Query: 129 MKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISS 175
           M+YMYQIVLLGLQSI N+EEIFSPNPYTQE+IDDVREKW RYFISS
Sbjct: 29  MEYMYQIVLLGLQSIRNMEEIFSPNPYTQEKIDDVREKWRRYFISS 74
[Close]
BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902210064|gb|KNA16336.1| (hypothetical protein SOVF_088860, partial [Spinacia oleracea])

HSP 1 Score: 76.3 bits (186), Expect = 6.100e-11
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 

		  

Query: 93  SYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 139
           +YRTWQANNK SRK L WK+  CS EPEMLEC Y V+KYMYQIVLL
Sbjct: 1   TYRTWQANNKESRKPLTWKEITCSHEPEMLECGYSVLKYMYQIVLL 46
[Close]
BLAST of Spo01961.1 vs. NCBI nr
Match: gi|731364837|ref|XP_010694195.1| (PREDICTED: uncharacterized protein LOC104907040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-6
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1 

		  

Query: 83  SVQVKGHISMSYRTWQANN-KGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQ 142
           S+ +K  +  +Y  ++    KG    L+W    C+++    EC YYVMK+M++I+    +
Sbjct: 823 SLAIKDSLDRAYSVYKVQGRKGRGSKLKWFSIECAKQTVDTECGYYVMKFMHEIIT-SYK 882

Query: 143 SISNVEEIFS--PNPYTQEEIDDVREKWSRYFISSL 176
              N+E+ +     PY  EEID+VRE+W+ +F   L
Sbjct: 883 DCQNLEKEYQRRDEPYNDEEIDEVREQWAAFFTKYL 917
[Close]
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045340 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.500e-44
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1 

		  

Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEEIFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEIFSPNPYTQEEINDVREKWSRYFXCRL 169
[Close]
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQW3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045340 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.600e-42
Identity = 89/101 (88.12%), Postives = 91/101 (90.10%), Query Frame = 1 

		  

Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEE----IFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEE    IFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEVRVHIFSPNPYTQEEINDVREKWSRYFXCRL 173
[Close]
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDX8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_190000 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-14
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 

		  

Query: 129 MKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISS 175
           M+YMYQIVLLGLQSI N+EEIFSPNPYTQE+IDDVREKW RYFISS
Sbjct: 29  MEYMYQIVLLGLQSIRNMEEIFSPNPYTQEKIDDVREKWRRYFISS 74
[Close]
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA00_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_088860 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.300e-11
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 

		  

Query: 93  SYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 139
           +YRTWQANNK SRK L WK+  CS EPEMLEC Y V+KYMYQIVLL
Sbjct: 1   TYRTWQANNKESRKPLTWKEITCSHEPEMLECGYSVLKYMYQIVLL 46
[Close]
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEQ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091570 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.300e-7
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1 

		  

Query: 83  SVQVKGHISMSYRTWQANN-KGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQ 142
           S+ +K  +  +Y  ++    KG    L+W    C+++    EC YYVMK+M++I+    +
Sbjct: 634 SLAIKDSLDRAYSVYKVQGRKGRGSKLKWFSIECAKQTVDTECGYYVMKFMHEIIT-SYK 693

Query: 143 SISNVEEIFS--PNPYTQEEIDDVREKWSRYFISSL 176
              N+E+ +     PY  EEID+VRE+W+ +F   L
Sbjct: 694 DCQNLEKEYQRRDEPYNDEEIDEVREQWAAFFTKYL 728
The following BLAST results are available for this feature:
BLAST of Spo01961.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228689|gb|KNA21218.1|9.3e-4491.7hypothetical protein SOVF_0453... [more]
gi|902228688|gb|KNA21217.1|5.1e-4288.1hypothetical protein SOVF_0453... [more]
gi|902150993|gb|KNA05474.1|1.6e-1489.1hypothetical protein SOVF_1900... [more]
gi|902210064|gb|KNA16336.1|6.1e-1176.0hypothetical protein SOVF_0888... [more]
gi|731364837|ref|XP_010694195.1|1.2e-632.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RP18_SPIOL6.5e-4491.7Uncharacterized protein OS=Spi... [more]
A0A0K9RQW3_SPIOL3.6e-4288.1Uncharacterized protein OS=Spi... [more]
A0A0K9QDX8_SPIOL1.1e-1489.1Uncharacterized protein (Fragm... [more]
A0A0K9RA00_SPIOL4.3e-1176.0Uncharacterized protein (Fragm... [more]
A0A0J8BEQ8_BETVU8.3e-732.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo01961.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01961.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo264810.66Barchart | Table