Spo01972 (gene)

Overview
NameSpo01972
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibulose bisphosphate carboxylase large chain (RuBisCO large subunit) (4.1.1.39)
LocationSpoScf_60562 : 330 .. 512 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

mRNA sequence

TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

Coding sequence (CDS)

TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

Protein sequence

FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01972.1Spo01972.1mRNA


Homology
[Close]
BLAST of Spo01972.1 vs. NCBI nr
Match: gi|11497536|ref|NP_054944.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Spinacia oleracea])

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. NCBI nr
Match: gi|2392029|pdb|1AA1|L (Chain L, Activated Spinach Rubisco In Complex With The Product 3- Phosphoglycerate)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. NCBI nr
Match: gi|6689632|emb|CAB65533.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Melocarpum hildebrandtii])

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 452
[Close]
BLAST of Spo01972.1 vs. NCBI nr
Match: gi|132051|sp|P00875.1|RBL_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase large chain; Short=RuBisCO large subunit; Flags: Precursor)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. NCBI nr
Match: gi|1827835|pdb|8RUC|A (Chain A, Activated Spinach Rubisco Complexed With 2-carboxyarabinitol Bisphosphate)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: Q6JXR3_9CARY (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Blitum nuttallianum GN=rbcL PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 381 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 440
[Close]
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPQ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155340 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1  FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
          FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 16 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 75
[Close]
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: Q9SBX7_9ROSI (Ribulose-bisphosphate carboxylase large subunit (Fragment) OS=Melocarpum hildebrandtii GN=rbcL PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 452
[Close]
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0M3SGK1_9CARY (Ribulose bisphosphate carboxylase large chain OS=Suaeda heterophylla GN=rbcL PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.600e-26
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEI 461
[Close]
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0M5KJF6_SUAMA (Ribulose bisphosphate carboxylase large chain OS=Suaeda maritima GN=rbcL PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.600e-26
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEI 461
[Close]
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_SPIOL (Ribulose bisphosphate carboxylase large chain OS=Spinacia oleracea GN=rbcL PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.100e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_BULAR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bulnesia arborea GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEV 452
[Close]
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_STEHA (Ribulose bisphosphate carboxylase large chain OS=Stegnosperma halimifolium GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEV 461
[Close]
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_ATRPA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Atriplex patula GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.200e-28
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEI 461
[Close]
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_ATRRS (Ribulose bisphosphate carboxylase large chain OS=Atriplex rosea GN=rbcL PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 4.200e-28
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEI 461
[Close]
BLAST of Spo01972.1 vs. TAIR (Arabidopsis)
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 118.6 bits (296), Expect = 1.300e-27
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 1 

		  

Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGN IIREA KWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAVEGNEIIREACKWSPELAAACEV 461
The following BLAST results are available for this feature:
BLAST of Spo01972.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497536|ref|NP_054944.1|1.8e-26100.ribulose-1,5-bisphosphate carb... [more]
gi|2392029|pdb|1AA1|L1.8e-26100.Chain L, Activated Spinach Rub... [more]
gi|6689632|emb|CAB65533.1|1.8e-26100.ribulose-1,5-bisphosphate carb... [more]
gi|132051|sp|P00875.1|RBL_SPIOL1.8e-26100.RecName: Full=Ribulose bisphos... [more]
gi|1827835|pdb|8RUC|A1.8e-26100.Chain A, Activated Spinach Rub... [more]
back to top
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q6JXR3_9CARY1.2e-26100.Ribulose-1,5-bisphosphate carb... [more]
A0A0K9QPQ9_SPIOL1.2e-26100.Uncharacterized protein OS=Spi... [more]
Q9SBX7_9ROSI1.2e-26100.Ribulose-bisphosphate carboxyl... [more]
A0A0M3SGK1_9CARY1.6e-2698.3Ribulose bisphosphate carboxyl... [more]
A0A0M5KJF6_SUAMA1.6e-2698.3Ribulose bisphosphate carboxyl... [more]
back to top
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBL_SPIOL1.1e-28100.Ribulose bisphosphate carboxyl... [more]
RBL_BULAR3.2e-2898.3Ribulose bisphosphate carboxyl... [more]
RBL_STEHA3.2e-2898.3Ribulose bisphosphate carboxyl... [more]
RBL_ATRPA4.2e-2896.6Ribulose bisphosphate carboxyl... [more]
RBL_ATRRS4.2e-2896.6Ribulose bisphosphate carboxyl... [more]
back to top
BLAST of Spo01972.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00490.11.3e-2795.0ribulose-bisphosphate carboxyl... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalGENE3D3.20.20.110coord: 1..60
score: 3.2
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 1..59
score: 1.1
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalunknownSSF51649RuBisCo, C-terminal domaincoord: 1..59
score: 5.63
NoneNo IPR availablePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 1..54
score: 2.5
NoneNo IPR availablePANTHERPTHR23321:SF31RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATEDcoord: 1..54
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006554 lysine catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0034968 histone lysine methylation
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0016168 chlorophyll binding
RNA-Seq Expression